Wall clock time and date at job start Tue Mar 31 2020 14:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47136 * 2 1 4 4 C 1.53005 * 109.46658 * 119.99499 * 2 1 3 5 5 N 1.46502 * 109.47078 * 305.00126 * 4 2 1 6 6 C 1.34781 * 119.99905 * 180.02562 * 5 4 2 7 7 O 1.21606 * 119.99855 * 359.97438 * 6 5 4 8 8 C 1.47428 * 119.99850 * 179.97438 * 6 5 4 9 9 C 1.39678 * 120.21400 * 0.02562 * 8 6 5 10 10 C 1.37804 * 119.93306 * 179.97438 * 9 8 6 11 11 C 1.38656 * 120.38754 * 0.02562 * 10 9 8 12 12 C 1.37915 * 120.43686 * 359.97438 * 11 10 9 13 13 C 1.39113 * 120.04584 * 359.97438 * 12 11 10 14 14 S 1.76204 * 120.18761 * 179.97438 * 13 12 11 15 15 C 1.76204 * 99.99719 * 6.86464 * 14 13 12 16 16 H 1.07991 * 120.00493 * 5.66058 * 15 14 13 17 17 C 1.38807 * 119.99763 * 185.65520 * 15 14 13 18 18 N 1.31561 * 120.00281 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00053 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47010 * 60.00402 * 19 17 15 21 21 H 1.48498 * 109.47273 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47303 * 300.00734 * 19 17 15 23 23 C 1.52999 * 109.47424 * 239.99285 * 2 1 3 24 24 C 1.53001 * 117.49501 * 128.75025 * 23 2 1 25 25 C 1.53001 * 117.49486 * 60.09035 * 23 2 1 26 26 H 1.08992 * 109.47349 * 300.00651 * 1 2 3 27 27 H 1.09004 * 109.46580 * 60.00560 * 1 2 3 28 28 H 1.09000 * 109.47125 * 180.02562 * 1 2 3 29 29 H 0.96703 * 113.99768 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46833 * 185.00209 * 4 2 1 31 31 H 1.08997 * 109.46883 * 65.00021 * 4 2 1 32 32 H 0.96997 * 120.00061 * 359.97438 * 5 4 2 33 33 H 1.07997 * 120.03544 * 0.25294 * 9 8 6 34 34 H 1.08007 * 119.80795 * 179.97438 * 10 9 8 35 35 H 1.07996 * 119.78651 * 179.97438 * 11 10 9 36 36 H 1.07995 * 119.97769 * 179.97438 * 12 11 10 37 37 H 0.96998 * 120.00032 * 179.97438 * 18 17 15 38 38 H 1.08994 * 115.55173 * 274.42100 * 23 2 1 39 39 H 1.08996 * 117.50131 * 0.02562 * 24 23 2 40 40 H 1.09001 * 117.49424 * 145.02138 * 24 23 2 41 41 H 1.09001 * 117.49743 * 214.97644 * 25 23 2 42 42 H 1.08998 * 117.50010 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.4557 -0.1035 2.4424 6 6 1.7645 -0.5765 3.6661 7 8 2.5277 -1.5164 3.7798 8 6 1.1770 0.0455 4.8667 9 6 0.2994 1.1249 4.7412 10 6 -0.2468 1.7016 5.8673 11 6 0.0698 1.2170 7.1273 12 6 0.9345 0.1520 7.2694 13 6 1.4955 -0.4445 6.1448 14 16 2.6012 -1.8049 6.3220 15 6 2.4581 -2.0917 8.0546 16 1 1.7384 -1.5353 8.6365 17 6 3.2705 -3.0330 8.6716 18 7 4.1476 -3.7107 7.9629 19 14 3.1194 -3.3366 10.5086 20 1 1.7411 -3.7908 10.8235 21 1 4.0914 -4.3815 10.9192 22 1 3.4060 -2.0784 11.2435 23 6 2.0401 -0.7214 -1.2491 24 6 3.0765 0.0038 -2.1099 25 6 1.6376 -0.1485 -2.6095 26 1 -0.3633 0.5139 0.8898 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 2.9704 1.4235 0.0004 30 1 3.1262 -0.6442 1.2953 31 1 1.7515 -1.7714 1.2058 32 1 0.8472 0.6465 2.3517 33 1 0.0457 1.5043 3.7624 34 1 -0.9248 2.5364 5.7679 35 1 -0.3636 1.6766 8.0033 36 1 1.1762 -0.2191 8.2543 37 1 4.7156 -4.3682 8.3942 38 1 2.1254 -1.8047 -1.1645 39 1 3.3952 0.9945 -1.7861 40 1 3.8434 -0.6026 -2.5919 41 1 1.4584 -0.8550 -3.4200 42 1 1.0097 0.7425 -2.6146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312594215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:25 Heat of formation + Delta-G solvation = -56.288553 kcal Electronic energy + Delta-G solvation = -24245.728175 eV Core-core repulsion = 20702.831325 eV Total energy + Delta-G solvation = -3542.896850 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.21718 -40.13001 -38.86836 -36.35401 -35.29706 -34.76235 -32.65611 -31.78672 -31.38909 -27.92453 -27.82488 -25.05767 -23.64198 -23.22640 -23.11172 -21.60001 -20.91043 -19.98595 -18.91613 -17.96985 -17.45397 -17.12485 -16.95417 -16.57755 -16.33219 -15.71502 -15.47852 -15.40400 -15.21821 -14.87283 -14.67904 -14.31126 -13.82268 -13.64025 -13.33633 -13.29430 -13.27216 -12.97117 -12.89891 -12.84496 -12.55290 -12.25580 -12.07157 -11.96359 -11.51987 -11.44012 -11.41447 -11.31916 -11.02686 -10.81726 -10.41658 -10.14533 -9.91725 -9.76061 -8.46536 -8.44906 -6.24115 0.03594 0.53719 1.26529 1.37922 1.43788 1.64452 2.02121 2.14585 2.26357 2.84691 2.87707 3.04181 3.24569 3.26672 3.56930 3.75291 3.92886 3.95946 4.01462 4.12720 4.25208 4.27337 4.39919 4.59525 4.61723 4.67642 4.77415 4.81592 4.86401 4.89054 4.94218 5.07802 5.11231 5.24092 5.30361 5.31056 5.36233 5.45167 5.49629 5.57355 5.67356 6.09820 6.16250 6.60668 6.72341 6.95986 7.35718 8.60427 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.018781 B = 0.003151 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.485175 B = 8882.796712 C =10119.275097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.165 3.835 3 O -0.559 6.559 4 C 0.100 3.900 5 N -0.707 5.707 6 C 0.544 3.456 7 O -0.557 6.557 8 C -0.182 4.182 9 C -0.054 4.054 10 C -0.157 4.157 11 C -0.069 4.069 12 C -0.175 4.175 13 C -0.072 4.072 14 S 0.065 5.935 15 C -0.603 4.603 16 H 0.094 0.906 17 C 0.024 3.976 18 N -0.905 5.905 19 Si 0.993 3.007 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.260 1.260 23 C -0.194 4.194 24 C -0.176 4.176 25 C -0.158 4.158 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.387 0.613 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.411 0.589 33 H 0.156 0.844 34 H 0.166 0.834 35 H 0.150 0.850 36 H 0.120 0.880 37 H 0.276 0.724 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 12.426 -17.257 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.124 3.876 3 O -0.368 6.368 4 C -0.024 4.024 5 N -0.362 5.362 6 C 0.333 3.667 7 O -0.438 6.438 8 C -0.196 4.196 9 C -0.074 4.074 10 C -0.180 4.180 11 C -0.090 4.090 12 C -0.200 4.200 13 C -0.190 4.190 14 S 0.323 5.677 15 C -0.750 4.750 16 H 0.112 0.888 17 C -0.181 4.181 18 N -0.540 5.540 19 Si 0.814 3.186 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.184 1.184 23 C -0.213 4.213 24 C -0.213 4.213 25 C -0.195 4.195 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.237 0.763 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.251 0.749 33 H 0.174 0.826 34 H 0.183 0.817 35 H 0.168 0.832 36 H 0.137 0.863 37 H 0.085 0.915 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.223 10.886 -17.941 22.538 hybrid contribution 0.138 -0.025 2.049 2.054 sum -8.085 10.860 -15.892 20.877 Atomic orbital electron populations 1.21770 0.91181 1.03253 1.03355 1.20734 0.95496 0.81514 0.89895 1.86520 1.28118 1.25464 1.96685 1.22008 0.98124 0.97675 0.84581 1.45577 1.49763 1.36768 1.04069 1.18520 0.81025 0.82841 0.84289 1.90782 1.37186 1.29666 1.86148 1.19490 1.06512 1.02844 0.90726 1.21410 0.93117 0.92318 1.00566 1.21321 1.03018 1.02527 0.91140 1.21544 0.94361 0.93640 0.99437 1.21462 1.01415 0.99428 0.97733 1.22990 1.00017 0.99976 0.96036 1.84916 1.46382 1.29118 1.07261 1.24223 1.25943 1.27708 0.97120 0.88797 1.26149 0.93103 0.93942 1.04918 1.70126 1.21412 1.23642 1.38850 0.85089 0.78822 0.78656 0.76055 1.18618 1.19860 1.18441 1.22899 1.06451 0.99884 0.92080 1.23090 0.92860 1.02390 1.02969 1.22945 0.97922 1.03107 0.95530 0.91736 0.90433 0.90531 0.76299 0.92343 0.91776 0.74949 0.82646 0.81677 0.83188 0.86269 0.91509 0.87240 0.87609 0.88221 0.87954 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.46 71.98 0.61 -1.49 16 2 C 0.16 2.79 0.88 -10.79 -0.01 2.78 16 3 O -0.56 -9.20 12.08 -148.98 -1.80 -11.00 16 4 C 0.10 2.45 4.80 86.38 0.41 2.86 16 5 N -0.71 -19.53 5.14 -466.36 -2.40 -21.92 16 6 C 0.54 21.58 7.75 86.66 0.67 22.26 16 7 O -0.56 -27.87 13.77 -4.05 -0.06 -27.93 16 8 C -0.18 -7.17 5.89 -19.95 -0.12 -7.29 16 9 C -0.05 -1.51 9.53 22.52 0.21 -1.30 16 10 C -0.16 -3.95 10.02 22.27 0.22 -3.72 16 11 C -0.07 -2.10 10.03 22.29 0.22 -1.87 16 12 C -0.18 -7.36 9.22 22.40 0.21 -7.15 16 13 C -0.07 -3.43 6.14 23.04 0.14 -3.29 16 14 S 0.06 3.77 18.56 -56.49 -1.05 2.72 16 15 C -0.60 -35.58 9.00 67.96 0.61 -34.97 16 16 H 0.09 5.21 4.98 -2.91 -0.01 5.19 16 17 C 0.02 1.42 5.49 84.87 0.47 1.88 16 18 N -0.91 -55.89 13.22 21.65 0.29 -55.61 16 19 Si 0.99 44.19 29.55 68.60 2.03 46.21 16 20 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 23 C -0.19 -2.88 5.15 -10.79 -0.06 -2.94 16 24 C -0.18 -2.22 9.74 30.62 0.30 -1.92 16 25 C -0.16 -1.94 9.68 30.62 0.30 -1.65 16 26 H 0.06 0.96 6.57 -2.39 -0.02 0.94 16 27 H 0.08 1.02 7.29 -2.39 -0.02 1.00 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.39 4.91 7.56 -74.06 -0.56 4.35 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.41 8.86 5.02 -92.71 -0.47 8.40 16 33 H 0.16 2.93 6.40 -2.91 -0.02 2.91 16 34 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 35 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 36 H 0.12 5.40 5.03 -2.91 -0.01 5.38 16 37 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.11 1.72 8.11 -2.39 -0.02 1.70 16 39 H 0.11 1.19 6.37 -2.39 -0.02 1.18 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.10 1.22 7.61 -2.39 -0.02 1.20 16 Total: -1.00 -78.49 355.52 1.25 -77.24 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.05 Total: 28.09 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 4.19 Total: -37.80 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -2.11 Total: -77.53 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -1.86 Total: -38.93 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.05 Total: 2.72 kcal Total: -78.49 1.25 -77.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312594215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.948 kcal (2) G-P(sol) polarization free energy of solvation -78.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds