Wall clock time and date at job start Tue Mar 31 2020 13:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47045 * 2 1 4 4 C 1.52999 * 109.58099 * 302.77128 * 3 2 1 5 5 C 1.53006 * 109.47323 * 303.61102 * 4 3 2 6 6 C 1.53238 * 109.58441 * 63.04658 * 3 2 1 7 7 N 1.46375 * 109.48927 * 62.13964 * 6 3 2 8 8 S 1.65591 * 119.64493 * 245.10708 * 7 6 3 9 9 O 1.42099 * 104.27801 * 206.06880 * 8 7 6 10 10 O 1.42096 * 104.28110 * 333.92961 * 8 7 6 11 11 C 1.81401 * 104.44963 * 90.00327 * 8 7 6 12 12 C 1.52998 * 109.47343 * 179.97438 * 11 8 7 13 13 C 1.50704 * 109.46971 * 179.97438 * 12 11 8 14 14 H 1.07998 * 120.00286 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99654 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00197 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99770 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47095 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47158 * 119.99831 * 17 15 13 20 20 H 1.48496 * 109.46859 * 239.99914 * 17 15 13 21 21 C 1.46372 * 120.70256 * 65.09009 * 7 6 3 22 22 C 1.53237 * 109.48985 * 294.90845 * 21 7 6 23 23 S 1.81739 * 109.58505 * 182.36041 * 3 2 1 24 24 H 1.09003 * 109.47040 * 176.20442 * 1 2 3 25 25 H 1.09008 * 109.46784 * 56.21208 * 1 2 3 26 26 H 1.08992 * 109.47558 * 296.20789 * 1 2 3 27 27 H 1.09008 * 109.47148 * 119.99223 * 2 1 3 28 28 H 1.08995 * 109.47668 * 239.99865 * 2 1 3 29 29 H 1.08997 * 109.47301 * 63.60739 * 4 3 2 30 30 H 1.08993 * 109.47409 * 183.61005 * 4 3 2 31 31 H 1.09000 * 109.47153 * 56.08812 * 5 4 3 32 32 H 1.09002 * 109.47319 * 176.09190 * 5 4 3 33 33 H 1.09006 * 109.46750 * 296.09174 * 5 4 3 34 34 H 1.09000 * 109.46679 * 182.14729 * 6 3 2 35 35 H 1.09001 * 109.46505 * 302.13483 * 6 3 2 36 36 H 1.09002 * 109.47249 * 299.99936 * 11 8 7 37 37 H 1.09004 * 109.47219 * 59.99736 * 11 8 7 38 38 H 1.09000 * 109.47452 * 299.99887 * 12 11 8 39 39 H 1.09003 * 109.47345 * 60.00228 * 12 11 8 40 40 H 0.97000 * 119.99876 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.47397 * 54.92086 * 21 7 6 42 42 H 1.09006 * 109.46474 * 174.90928 * 21 7 6 43 43 H 1.08995 * 109.58614 * 177.45700 * 22 21 7 44 44 H 1.09001 * 109.58673 * 297.86704 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4752 2.1860 -1.2121 5 6 1.8520 1.4362 -2.4915 6 6 1.5942 2.1449 1.2869 7 7 2.1825 1.4662 2.4427 8 16 1.1981 0.6948 3.5281 9 8 1.9359 0.7098 4.7424 10 8 -0.0452 1.3739 3.4178 11 6 1.0582 -0.9972 2.8893 12 6 0.1625 -1.8203 3.8173 13 6 0.0458 -3.2258 3.2862 14 1 0.5594 -3.5043 2.3779 15 6 -0.7159 -4.1565 3.9605 16 7 -1.3401 -3.8178 5.0674 17 14 -0.8601 -5.8989 3.3026 18 1 -0.0681 -6.0231 2.0526 19 1 -0.3421 -6.8545 4.3144 20 1 -2.2851 -6.2039 3.0174 21 6 3.6316 1.4617 2.6489 22 6 4.3070 0.6823 1.5155 23 16 3.8560 1.4466 -0.0705 24 1 -0.3633 -1.0254 -0.0680 25 1 -0.3633 0.5716 -0.8542 26 1 -0.3634 0.4538 0.9219 27 1 1.8934 -0.5137 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 0.3898 2.2424 -1.1304 30 1 1.8899 3.1934 -1.2460 31 1 1.4971 0.4076 -2.4276 32 1 1.3918 1.9268 -3.3491 33 1 2.9357 1.4400 -2.6090 34 1 1.9258 3.1831 1.2677 35 1 0.5072 2.1121 1.3608 36 1 0.6227 -0.9736 1.8903 37 1 2.0480 -1.4513 2.8434 38 1 0.5984 -1.8440 4.8161 39 1 -0.8274 -1.3664 3.8635 40 1 -1.8763 -4.4725 5.5415 41 1 4.0010 2.4871 2.6550 42 1 3.8613 0.9872 3.6031 43 1 5.3889 0.7162 1.6429 44 1 3.9676 -0.3534 1.5314 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330914442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:48 Heat of formation + Delta-G solvation = -102.071453 kcal Electronic energy + Delta-G solvation = -25235.190459 eV Core-core repulsion = 21825.752265 eV Total energy + Delta-G solvation = -3409.438194 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.86563 -38.38535 -37.16678 -36.70109 -35.93564 -33.38667 -31.95894 -31.73523 -29.30408 -27.59984 -25.51761 -24.79508 -23.83376 -22.98668 -20.43075 -20.09429 -19.24271 -18.56346 -17.54561 -17.43934 -16.98842 -16.65455 -16.47815 -16.20990 -15.86270 -15.33827 -14.93208 -14.87113 -14.50824 -14.32539 -14.04553 -13.87911 -13.56003 -13.41828 -13.31983 -13.14137 -13.01264 -12.95480 -12.91069 -12.74257 -12.72860 -12.40469 -12.24025 -12.17944 -12.01181 -11.85191 -11.73002 -11.48168 -11.37020 -11.18376 -10.66813 -10.59288 -10.15214 -8.55855 -8.27264 -6.40852 -0.83867 0.80315 1.39842 1.39963 1.52991 1.55537 1.57763 2.36351 2.71087 3.02371 3.06739 3.40401 3.53193 3.81705 3.85135 3.94481 3.99411 4.01378 4.23596 4.28648 4.35275 4.43386 4.49247 4.59813 4.64867 4.66376 4.67743 4.76886 4.83395 4.90311 4.96321 5.08330 5.15516 5.21304 5.22547 5.23924 5.30146 5.33820 5.48678 5.58913 5.67185 6.04363 6.72337 7.29450 8.85290 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.004857 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.252954 B = 5763.834034 C = 6534.993598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.135 4.135 3 C -0.032 4.032 4 C -0.099 4.099 5 C -0.152 4.152 6 C 0.115 3.885 7 N -0.993 5.993 8 S 2.601 3.399 9 O -0.990 6.990 10 O -0.985 6.985 11 C -0.603 4.603 12 C 0.028 3.972 13 C -0.532 4.532 14 H 0.075 0.925 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.970 3.030 18 H -0.256 1.256 19 H -0.279 1.279 20 H -0.278 1.278 21 C 0.110 3.890 22 C -0.109 4.109 23 S -0.244 6.244 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.152 0.848 37 H 0.138 0.862 38 H 0.004 0.996 39 H 0.005 0.995 40 H 0.267 0.733 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.138 0.862 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.346 11.906 -14.837 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.174 4.174 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.209 4.209 6 C -0.012 4.012 7 N -0.830 5.830 8 S 2.699 3.301 9 O -0.981 6.981 10 O -0.976 6.976 11 C -0.735 4.735 12 C -0.011 4.011 13 C -0.571 4.571 14 H 0.093 0.907 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.794 3.206 18 H -0.179 1.179 19 H -0.204 1.204 20 H -0.203 1.203 21 C -0.017 4.017 22 C -0.259 4.259 23 S -0.014 6.014 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.170 0.830 37 H 0.156 0.844 38 H 0.022 0.978 39 H 0.024 0.976 40 H 0.076 0.924 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.156 0.844 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.619 12.697 -14.736 22.162 hybrid contribution -0.983 -1.938 0.924 2.362 sum 9.636 10.759 -13.812 19.985 Atomic orbital electron populations 1.22141 0.95257 1.02972 1.02782 1.22218 0.96406 0.94760 1.03987 1.23248 0.93369 0.98893 0.98850 1.21453 1.01702 0.99100 0.91551 1.21832 1.01748 1.00803 0.96541 1.21888 0.99614 0.97284 0.82384 1.57348 1.17127 1.68097 1.40470 1.05120 0.73203 0.77514 0.74249 1.93490 1.72353 1.87736 1.44488 1.93489 1.44945 1.72466 1.86653 1.30822 1.10144 1.19968 1.12570 1.18765 0.93050 0.96042 0.93263 1.21461 1.30380 0.94948 1.10293 0.90721 1.26059 0.94899 1.03953 0.95018 1.70101 1.32388 1.36725 1.18150 0.85322 0.78206 0.78295 0.78808 1.17940 1.20440 1.20350 1.21737 0.77650 1.03485 0.98784 1.24011 1.05777 1.01936 0.94164 1.86646 1.06437 1.81688 1.26596 0.92156 0.89190 0.93751 0.91960 0.88964 0.89217 0.90173 0.92163 0.91423 0.92580 0.87833 0.88148 0.83012 0.84407 0.97809 0.97619 0.92402 0.87591 0.88054 0.84372 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 7.57 71.98 0.54 -3.48 16 2 C -0.13 -2.92 3.94 30.59 0.12 -2.80 16 3 C -0.03 -0.61 0.39 -10.71 0.00 -0.61 16 4 C -0.10 -1.49 4.47 30.60 0.14 -1.36 16 5 C -0.15 -2.17 9.34 71.98 0.67 -1.50 16 6 C 0.11 2.52 4.69 86.48 0.41 2.93 16 7 N -0.99 -25.59 2.36 -515.52 -1.22 -26.81 16 8 S 2.60 94.63 5.40 -56.49 -0.31 94.33 16 9 O -0.99 -41.41 16.49 -127.65 -2.10 -43.51 16 10 O -0.99 -40.66 16.31 -127.65 -2.08 -42.74 16 11 C -0.60 -22.99 4.48 71.98 0.32 -22.67 16 12 C 0.03 1.44 4.98 29.85 0.15 1.58 16 13 C -0.53 -28.97 9.11 25.60 0.23 -28.73 16 14 H 0.07 3.77 7.74 -2.91 -0.02 3.74 16 15 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 16 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 17 Si 0.97 42.80 29.54 68.60 2.03 44.82 16 18 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 C 0.11 2.28 6.20 86.48 0.54 2.81 16 22 C -0.11 -1.94 6.27 72.06 0.45 -1.49 16 23 S -0.24 -4.56 19.94 -56.49 -1.13 -5.68 16 24 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 25 H 0.09 1.61 6.26 -2.38 -0.01 1.60 16 26 H 0.04 1.19 5.97 -2.39 -0.01 1.18 16 27 H 0.06 1.51 3.43 -2.38 -0.01 1.51 16 28 H 0.09 1.84 6.45 -2.39 -0.02 1.82 16 29 H 0.09 1.23 6.51 -2.39 -0.02 1.22 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 0.91 6.21 -2.39 -0.01 0.89 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.88 7.25 -2.38 -0.02 0.87 16 34 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.10 2.42 5.11 -2.39 -0.01 2.40 16 36 H 0.15 5.23 3.58 -2.39 -0.01 5.22 16 37 H 0.14 4.62 8.06 -2.39 -0.02 4.60 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.27 15.04 8.31 -92.71 -0.77 14.26 16 41 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.10 2.26 6.75 -2.38 -0.02 2.24 16 43 H 0.14 1.81 8.14 -2.39 -0.02 1.80 16 44 H 0.08 1.62 7.42 -2.39 -0.02 1.60 16 Total: -1.00 -71.03 345.69 0.50 -70.53 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 1.00 Total: 19.99 kcal Atomic # 6 Polarization: -58.93 SS G_CDS: 4.03 Total: -54.90 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -0.93 Total: -82.84 kcal Atomic # 8 Polarization: -82.06 SS G_CDS: -4.19 Total: -86.25 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 90.08 SS G_CDS: -1.43 Total: 88.64 kcal Total: -71.03 0.50 -70.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330914442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.540 kcal (2) G-P(sol) polarization free energy of solvation -71.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds