Wall clock time and date at job start Tue Mar 31 2020 12:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.87490 * 2 1 4 4 C 1.54323 * 109.88220 * 121.02137 * 2 1 3 5 5 H 1.09011 * 110.71944 * 215.59128 * 4 2 1 6 6 O 1.42900 * 110.72184 * 338.85714 * 4 2 1 7 7 C 1.55152 * 102.94779 * 97.22636 * 4 2 1 8 8 C 1.54903 * 101.58189 * 35.49887 * 7 4 2 9 9 N 1.47020 * 109.88309 * 238.82441 * 2 1 3 10 10 C 1.34781 * 125.64663 * 59.48993 * 9 2 1 11 11 O 1.21541 * 120.00174 * 354.18944 * 10 9 2 12 12 C 1.47871 * 119.99776 * 174.18981 * 10 9 2 13 13 C 1.39674 * 120.09912 * 350.29526 * 12 10 9 14 14 C 1.38045 * 120.03158 * 179.74580 * 13 12 10 15 15 C 1.38180 * 120.24645 * 0.55734 * 14 13 12 16 16 C 1.39181 * 120.20096 * 359.69691 * 15 14 13 17 17 S 1.76201 * 120.02199 * 180.02562 * 16 15 14 18 18 C 1.76200 * 99.99851 * 271.52754 * 17 16 15 19 19 H 1.08007 * 120.00006 * 354.16577 * 18 17 16 20 20 C 1.38729 * 120.00034 * 174.16255 * 18 17 16 21 21 N 1.31619 * 120.00034 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00148 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46774 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47258 * 119.99830 * 22 20 18 25 25 H 1.48498 * 109.46972 * 240.00202 * 22 20 18 26 26 C 1.38876 * 119.95670 * 0.02562 * 16 15 14 27 27 H 1.09003 * 109.47152 * 298.98042 * 1 2 3 28 28 H 1.08998 * 109.46903 * 58.98625 * 1 2 3 29 29 H 1.09005 * 109.46878 * 178.97970 * 1 2 3 30 30 H 1.09005 * 109.47651 * 181.01333 * 3 2 1 31 31 H 1.08998 * 109.47532 * 301.01432 * 3 2 1 32 32 H 1.09000 * 109.47014 * 61.01741 * 3 2 1 33 33 H 0.96698 * 114.00328 * 180.02562 * 6 4 2 34 34 H 1.08991 * 111.00718 * 153.58036 * 7 4 2 35 35 H 1.09007 * 111.00098 * 277.42738 * 7 4 2 36 36 H 1.09005 * 110.37179 * 204.15561 * 8 7 4 37 37 H 1.08997 * 110.46021 * 81.88104 * 8 7 4 38 38 H 1.07996 * 119.98598 * 0.02562 * 13 12 10 39 39 H 1.08001 * 119.87568 * 180.25787 * 14 13 12 40 40 H 1.07997 * 119.89766 * 179.72640 * 15 14 13 41 41 H 0.97003 * 120.00525 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.11955 * 179.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4388 0.0000 4 6 2.0548 -0.7479 1.2437 5 1 2.9657 -0.2810 1.6187 6 8 1.0545 -0.7983 2.2629 7 6 2.3519 -2.1686 0.6953 8 6 2.8568 -1.8509 -0.7342 9 7 2.0300 -0.7157 -1.1829 10 6 1.7742 -0.3886 -2.4652 11 8 0.9918 0.5059 -2.7197 12 6 2.4456 -1.1182 -3.5623 13 6 3.4895 -2.0021 -3.2798 14 6 4.1118 -2.6864 -4.3045 15 6 3.7137 -2.4923 -5.6135 16 6 2.6781 -1.6100 -5.9068 17 16 2.1739 -1.3666 -7.5775 18 6 3.2645 -0.0619 -8.0392 19 1 3.9063 0.3928 -7.2991 20 6 3.2987 0.3812 -9.3534 21 7 2.5170 -0.1734 -10.2555 22 14 4.4554 1.7639 -9.8431 23 1 5.2220 2.2126 -8.6530 24 1 5.3961 1.2771 -10.8839 25 1 3.6670 2.9014 -10.3813 26 6 2.0424 -0.9215 -4.8819 27 1 -0.3633 0.4979 0.8990 28 1 -0.3633 0.5295 -0.8807 29 1 -0.3633 -1.0276 -0.0183 30 1 3.1400 1.4313 -0.0182 31 1 1.6757 1.9606 -0.8807 32 1 1.7053 1.9498 0.8990 33 1 1.3344 -1.2578 3.0664 34 1 3.1269 -2.6601 1.2832 35 1 1.4452 -2.7728 0.6641 36 1 2.7088 -2.7100 -1.3886 37 1 3.9093 -1.5684 -0.7125 38 1 3.8070 -2.1537 -2.2587 39 1 4.9159 -3.3724 -4.0828 40 1 4.2074 -3.0273 -6.4112 41 1 2.5406 0.1367 -11.1743 42 1 1.2388 -0.2358 -5.1066 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336031547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:52 Heat of formation + Delta-G solvation = -38.421385 kcal Electronic energy + Delta-G solvation = -24752.986903 eV Core-core repulsion = 21210.864832 eV Total energy + Delta-G solvation = -3542.122071 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.95291 -38.80558 -37.54858 -35.91735 -33.24746 -32.50127 -31.38205 -30.59672 -29.97858 -27.38847 -25.74805 -25.52820 -24.10315 -22.71896 -22.11901 -20.81380 -18.92226 -17.92928 -17.80975 -16.99301 -16.27934 -15.83056 -15.55816 -14.93259 -14.84651 -14.61671 -14.53921 -14.10010 -13.91574 -13.71209 -13.33482 -13.22550 -13.05672 -12.87714 -12.41802 -12.14031 -12.03960 -12.00713 -11.78571 -11.41153 -11.15282 -11.12473 -11.08359 -11.05402 -10.76532 -10.64427 -10.27697 -9.92245 -9.64475 -9.16937 -8.96801 -8.84027 -8.54711 -8.00770 -6.70551 -6.28119 -4.01888 1.18706 1.67011 2.71296 3.01891 3.19759 3.22672 3.29253 3.48167 3.71269 4.06200 4.08273 4.19097 4.26616 4.58710 4.69278 4.78762 4.89873 4.99632 5.08092 5.13641 5.18012 5.25267 5.29245 5.33671 5.48663 5.51946 5.65150 5.68168 5.70668 5.77540 5.87004 5.89194 5.98167 6.12619 6.26037 6.31890 6.41274 6.60427 6.65668 6.94330 7.20483 7.21330 7.45014 7.58555 8.25922 8.33840 9.17889 10.78724 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.003060 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.628282 B = 9147.492316 C = 9614.123811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.170 3.830 3 C -0.157 4.157 4 C 0.101 3.899 5 H 0.075 0.925 6 O -0.551 6.551 7 C -0.169 4.169 8 C 0.090 3.910 9 N -0.612 5.612 10 C 0.583 3.417 11 O -0.526 6.526 12 C -0.151 4.151 13 C -0.119 4.119 14 C -0.143 4.143 15 C -0.054 4.054 16 C -0.107 4.107 17 S -0.037 6.037 18 C -0.518 4.518 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.871 5.871 22 Si 0.921 3.079 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.019 4.019 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.379 0.621 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.144 0.856 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.269 0.731 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.854 -5.420 24.781 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.086 3.914 3 C -0.215 4.215 4 C 0.041 3.959 5 H 0.093 0.907 6 O -0.356 6.356 7 C -0.208 4.208 8 C -0.033 4.033 9 N -0.348 5.348 10 C 0.375 3.625 11 O -0.403 6.403 12 C -0.156 4.156 13 C -0.137 4.137 14 C -0.163 4.163 15 C -0.075 4.075 16 C -0.217 4.217 17 S 0.197 5.803 18 C -0.666 4.666 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.506 5.506 22 Si 0.747 3.253 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.041 4.041 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.227 0.773 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.161 0.839 39 H 0.140 0.860 40 H 0.148 0.852 41 H 0.079 0.921 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.175 -5.095 23.227 23.808 hybrid contribution 2.179 0.985 0.785 2.517 sum 3.354 -4.110 24.012 24.591 Atomic orbital electron populations 1.21903 0.92979 1.02404 1.02872 1.20752 0.95780 0.91733 0.83170 1.22155 1.00866 0.94998 1.03461 1.22778 0.90478 0.94594 0.88084 0.90744 1.86547 1.40931 1.80519 1.27620 1.23591 1.02902 0.98021 0.96254 1.22761 0.94955 0.90464 0.95106 1.48367 1.51542 1.30194 1.04666 1.18094 0.80945 0.82855 0.80652 1.90747 1.35142 1.31525 1.82860 1.19773 1.00466 1.01906 0.93460 1.22233 0.95429 0.95498 1.00584 1.21107 1.00911 1.01314 0.92950 1.22014 0.94097 0.95154 0.96281 1.22827 0.98199 0.98263 1.02434 1.83605 1.50419 1.48559 0.97672 1.22876 1.26223 1.20193 0.97262 0.90601 1.25000 0.96104 0.97296 0.95202 1.69995 1.36988 1.40692 1.02930 0.86070 0.79973 0.80694 0.78589 1.19501 1.20481 1.20428 1.21909 0.97280 0.95003 0.89893 0.91271 0.90986 0.92775 0.92552 0.90686 0.91413 0.77327 0.89514 0.89414 0.88594 0.90570 0.83905 0.85955 0.85163 0.92125 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 7.76 37.16 0.29 -1.52 16 2 C 0.17 1.91 0.82 -130.85 -0.11 1.81 16 3 C -0.16 -1.77 8.41 37.15 0.31 -1.46 16 4 C 0.10 0.76 3.71 -24.90 -0.09 0.67 16 5 H 0.07 0.46 7.85 -51.92 -0.41 0.06 16 6 O -0.55 -3.98 11.77 -35.23 -0.41 -4.39 16 7 C -0.17 -1.08 6.81 -24.59 -0.17 -1.25 16 8 C 0.09 0.77 4.91 -2.53 -0.01 0.76 16 9 N -0.61 -7.68 2.82 -156.91 -0.44 -8.12 16 10 C 0.58 9.75 7.36 -12.32 -0.09 9.65 16 11 O -0.53 -10.45 14.05 5.33 0.07 -10.37 16 12 C -0.15 -2.61 5.85 -104.99 -0.61 -3.22 16 13 C -0.12 -1.67 8.29 -39.12 -0.32 -1.99 16 14 C -0.14 -2.08 10.02 -39.67 -0.40 -2.47 16 15 C -0.05 -1.00 9.79 -39.25 -0.38 -1.38 16 16 C -0.11 -2.31 5.45 -39.00 -0.21 -2.52 16 17 S -0.04 -0.96 21.41 -107.50 -2.30 -3.26 16 18 C -0.52 -14.77 9.46 30.91 0.29 -14.48 16 19 H 0.08 2.16 7.79 -52.48 -0.41 1.75 16 20 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 21 N -0.87 -25.59 13.22 55.49 0.73 -24.86 16 22 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.02 -0.40 9.34 -38.92 -0.36 -0.76 16 27 H 0.07 0.80 7.49 -51.93 -0.39 0.41 16 28 H 0.07 1.08 6.60 -51.93 -0.34 0.74 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.05 7.11 -51.93 -0.37 0.68 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.38 1.00 9.12 45.56 0.42 1.41 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.82 5.99 -51.93 -0.31 0.51 16 37 H 0.08 0.54 7.32 -51.93 -0.38 0.16 16 38 H 0.14 1.45 3.34 -52.49 -0.18 1.28 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.13 2.31 8.06 -52.49 -0.42 1.88 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.14 3.03 7.68 -52.49 -0.40 2.63 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -34.09 353.05 -8.89 -42.98 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.87 Total: 2.33 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -1.97 Total: -16.20 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.29 Total: -32.98 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.34 Total: -14.76 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.30 Total: -3.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.09 -8.89 -42.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336031547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.561 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds