Wall clock time and date at job start Tue Mar 31 2020 12:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.64007 * 2 1 4 4 S 1.65600 * 120.00142 * 47.37329 * 3 2 1 5 5 O 1.42103 * 106.39801 * 43.40844 * 4 3 2 6 6 O 1.42094 * 106.40360 * 176.33103 * 4 3 2 7 7 C 1.76201 * 107.21625 * 289.87446 * 4 3 2 8 8 C 1.38634 * 119.74775 * 284.63230 * 7 4 3 9 9 C 1.37617 * 120.24548 * 179.76553 * 8 7 4 10 10 C 1.40714 * 119.74768 * 0.49302 * 9 8 7 11 11 C 1.41392 * 120.24528 * 179.79144 * 10 9 8 12 12 H 1.07998 * 120.00046 * 206.31013 * 11 10 9 13 13 C 1.39946 * 120.00374 * 26.30413 * 11 10 9 14 14 N 1.30823 * 119.99552 * 12.70369 * 13 11 10 15 15 Si 1.86794 * 120.00272 * 192.69907 * 13 11 10 16 16 H 1.48499 * 109.47135 * 90.00235 * 15 13 11 17 17 H 1.48499 * 109.47344 * 210.00040 * 15 13 11 18 18 H 1.48498 * 109.47207 * 330.00013 * 15 13 11 19 19 C 1.40716 * 119.51097 * 359.76377 * 10 9 8 20 20 C 1.37618 * 119.74289 * 0.02562 * 19 10 9 21 21 C 1.53017 * 109.64186 * 120.42258 * 2 1 3 22 22 C 1.50068 * 110.14847 * 169.33405 * 21 2 1 23 23 C 1.29444 * 124.07231 * 342.86398 * 22 21 2 24 24 C 1.50068 * 124.07529 * 0.49472 * 23 22 21 25 25 C 1.53396 * 109.64118 * 239.58205 * 2 1 3 26 26 H 1.09002 * 109.47032 * 48.74295 * 1 2 3 27 27 H 1.09006 * 109.47230 * 168.74237 * 1 2 3 28 28 H 1.08995 * 109.47434 * 288.74615 * 1 2 3 29 29 H 0.97003 * 120.00195 * 227.64817 * 3 2 1 30 30 H 1.08000 * 119.87522 * 0.02562 * 8 7 4 31 31 H 1.08007 * 120.12471 * 180.23454 * 9 8 7 32 32 H 0.97004 * 119.99844 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.12690 * 180.02562 * 19 10 9 34 34 H 1.08002 * 119.87620 * 179.97438 * 20 19 10 35 35 H 1.09001 * 109.35709 * 289.54349 * 21 2 1 36 36 H 1.09008 * 109.35888 * 49.26104 * 21 2 1 37 37 H 1.07999 * 117.96061 * 162.85088 * 22 21 2 38 38 H 1.08002 * 117.95963 * 180.47359 * 23 22 21 39 39 H 1.08997 * 109.35354 * 103.05396 * 24 23 22 40 40 H 1.09004 * 109.35573 * 222.76940 * 24 23 22 41 41 H 1.09008 * 109.64101 * 292.35390 * 25 2 1 42 42 H 1.08995 * 109.64565 * 52.98005 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0224 1.3797 0.0000 4 16 1.3860 2.4860 1.0552 5 8 1.2769 1.8273 2.3096 6 8 2.1220 3.6872 0.8695 7 6 -0.2603 2.8243 0.5261 8 6 -0.4750 3.6284 -0.5827 9 6 -1.7563 3.8953 -1.0077 10 6 -2.8510 3.3572 -0.3062 11 6 -4.1720 3.6283 -0.7310 12 1 -4.9841 3.6026 -0.0195 13 6 -4.4274 3.9299 -2.0735 14 7 -3.5050 3.7217 -2.9775 15 14 -6.0852 4.6298 -2.5747 16 1 -6.0369 6.1125 -2.5087 17 1 -6.4024 4.2061 -3.9621 18 1 -7.1342 4.1271 -1.6516 19 6 -2.6212 2.5468 0.8210 20 6 -1.3312 2.2896 1.2255 21 6 2.0444 -0.7298 1.2427 22 6 3.5221 -0.9655 1.1292 23 6 4.1844 -0.8956 0.0192 24 6 3.5690 -0.5587 -1.3074 25 6 2.0456 -0.7315 -1.2459 26 1 -0.3633 0.6777 -0.7726 27 1 -0.3634 -1.0079 -0.2006 28 1 -0.3634 0.3302 0.9731 29 1 2.7184 1.6463 -0.6208 30 1 0.3667 4.0434 -1.1173 31 1 -1.9212 4.5189 -1.8740 32 1 -3.6818 3.9311 -3.9081 33 1 -3.4541 2.1283 1.3666 34 1 -1.1524 1.6682 2.0906 35 1 1.8418 -0.1249 2.1266 36 1 1.5337 -1.6883 1.3361 37 1 4.0668 -1.2083 2.0296 38 1 5.2460 -1.0916 0.0498 39 1 3.8039 0.4746 -1.5625 40 1 3.9746 -1.2208 -2.0724 41 1 1.8010 -1.7914 -1.1759 42 1 1.5867 -0.3046 -2.1376 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398305337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:00 Heat of formation + Delta-G solvation = -68.996441 kcal Electronic energy + Delta-G solvation = -25823.772511 eV Core-core repulsion = 22280.324606 eV Total energy + Delta-G solvation = -3543.447905 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.45100 -39.39010 -38.07528 -36.74948 -35.81465 -34.91360 -32.08616 -31.72767 -31.56875 -31.07122 -27.81691 -27.19917 -24.06058 -23.25137 -22.92913 -21.99992 -20.32428 -19.40057 -18.93379 -18.60679 -18.11957 -17.15397 -16.75544 -16.48002 -15.86015 -15.58251 -15.19626 -15.15215 -14.96452 -14.92289 -14.07837 -14.03920 -13.90263 -13.81578 -13.43777 -13.35223 -13.14075 -13.06275 -12.99149 -12.89765 -12.87036 -12.64576 -12.58057 -12.39672 -12.10267 -11.95076 -11.56697 -11.47366 -11.25298 -11.14274 -11.03643 -10.28921 -9.74198 -9.69141 -9.44604 -8.79856 -6.62410 -0.24214 0.51611 1.09428 1.37084 1.43982 1.50869 1.51545 2.13120 2.27817 2.56589 2.96908 3.53674 3.65130 3.72065 3.83284 3.98894 4.23988 4.31038 4.32955 4.37468 4.51972 4.60620 4.63741 4.82495 4.88705 4.89845 4.96301 4.97514 5.08299 5.12082 5.15840 5.26729 5.30110 5.32617 5.41720 5.53295 5.56768 5.63068 5.80670 5.86663 5.97339 6.17186 6.19681 6.25233 6.53549 6.72976 6.84567 8.13270 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.003895 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.977365 B = 7186.458749 C = 7585.114556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.188 3.812 3 N -1.100 6.100 4 S 2.720 3.280 5 O -0.992 6.992 6 O -1.014 7.014 7 C -0.785 4.785 8 C -0.019 4.019 9 C -0.203 4.203 10 C 0.115 3.885 11 C -0.471 4.471 12 H 0.088 0.912 13 C 0.035 3.965 14 N -0.802 5.802 15 Si 0.990 3.010 16 H -0.262 1.262 17 H -0.264 1.264 18 H -0.255 1.255 19 C -0.252 4.252 20 C 0.005 3.995 21 C -0.125 4.125 22 C -0.158 4.158 23 C -0.162 4.162 24 C -0.093 4.093 25 C -0.113 4.113 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.418 0.582 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.296 0.704 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.255 -9.332 -0.817 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.100 3.900 3 N -0.860 5.860 4 S 2.816 3.184 5 O -0.982 6.982 6 O -1.005 7.005 7 C -0.878 4.878 8 C -0.039 4.039 9 C -0.224 4.224 10 C 0.111 3.889 11 C -0.498 4.498 12 H 0.106 0.894 13 C -0.184 4.184 14 N -0.425 5.425 15 Si 0.810 3.190 16 H -0.187 1.187 17 H -0.189 1.189 18 H -0.179 1.179 19 C -0.273 4.273 20 C -0.015 4.015 21 C -0.163 4.163 22 C -0.176 4.176 23 C -0.179 4.179 24 C -0.130 4.130 25 C -0.152 4.152 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.255 0.745 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.144 0.856 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.647 -9.034 -0.224 12.507 hybrid contribution -1.032 0.595 -0.906 1.496 sum 7.615 -8.439 -1.129 11.423 Atomic orbital electron populations 1.22726 0.94441 1.04291 1.03095 1.20172 0.92697 0.79983 0.97121 1.55455 1.52635 1.21179 1.56757 1.00432 0.73284 0.71599 0.73076 1.93405 1.87695 1.75303 1.41784 1.93459 1.72702 1.47361 1.86954 1.29619 1.20493 1.23698 1.13948 1.20368 0.96818 0.93701 0.93030 1.21377 0.92084 1.05525 1.03393 1.18164 0.93923 0.86537 0.90241 1.20201 0.94371 1.40101 0.95139 0.89392 1.26920 1.03211 0.92394 0.95843 1.69832 1.36286 1.32625 1.03769 0.85067 0.76342 0.79130 0.78494 1.18669 1.18862 1.17883 1.21263 0.96157 1.06752 1.03088 1.20381 0.91914 0.93730 0.95441 1.21327 0.94574 1.01783 0.98660 1.22079 0.95732 1.01361 0.98470 1.22172 1.00074 1.01200 0.94501 1.20558 0.94260 1.02229 0.95939 1.21958 0.96055 1.01161 0.96045 0.92291 0.89114 0.92054 0.74491 0.87284 0.87052 0.89316 0.87277 0.85615 0.89500 0.88534 0.87533 0.86674 0.90732 0.88901 0.89058 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.55 6.73 71.98 0.48 -5.07 16 2 C 0.19 4.89 0.72 3.74 0.00 4.90 16 3 N -1.10 -32.18 5.13 -151.67 -0.78 -32.96 16 4 S 2.72 102.57 5.28 -56.49 -0.30 102.27 16 5 O -0.99 -39.19 13.73 -128.00 -1.76 -40.95 16 6 O -1.01 -43.75 17.71 -128.00 -2.27 -46.01 16 7 C -0.78 -33.51 3.96 22.46 0.09 -33.42 16 8 C -0.02 -0.88 9.51 22.22 0.21 -0.67 16 9 C -0.20 -10.31 8.68 22.73 0.20 -10.11 16 10 C 0.11 5.86 5.57 -21.29 -0.12 5.74 16 11 C -0.47 -23.43 9.07 23.46 0.21 -23.22 16 12 H 0.09 4.16 7.88 -2.91 -0.02 4.14 16 13 C 0.03 1.59 5.23 85.26 0.45 2.04 16 14 N -0.80 -38.28 10.78 21.83 0.24 -38.04 16 15 Si 0.99 34.72 29.58 68.60 2.03 36.75 16 16 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 17 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 18 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 19 C -0.25 -11.78 9.80 22.73 0.22 -11.56 16 20 C 0.01 0.22 7.09 22.22 0.16 0.37 16 21 C -0.13 -3.15 4.94 29.66 0.15 -3.01 16 22 C -0.16 -3.51 9.68 27.04 0.26 -3.25 16 23 C -0.16 -3.09 9.74 27.04 0.26 -2.83 16 24 C -0.09 -1.63 5.64 29.80 0.17 -1.46 16 25 C -0.11 -2.28 5.07 30.87 0.16 -2.13 16 26 H 0.06 2.04 7.14 -2.39 -0.02 2.02 16 27 H 0.09 2.22 8.10 -2.38 -0.02 2.20 16 28 H 0.06 1.98 4.47 -2.39 -0.01 1.97 16 29 H 0.42 10.56 6.81 -96.74 -0.66 9.90 16 30 H 0.11 4.61 7.97 -2.91 -0.02 4.58 16 31 H 0.11 5.83 6.10 -2.91 -0.02 5.81 16 32 H 0.30 12.61 8.30 -92.71 -0.77 11.84 16 33 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 34 H 0.13 4.89 6.63 -2.91 -0.02 4.87 16 35 H 0.09 2.63 5.45 -2.39 -0.01 2.62 16 36 H 0.10 2.07 8.11 -2.38 -0.02 2.05 16 37 H 0.11 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.12 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.07 1.29 6.66 -2.39 -0.02 1.28 16 40 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.09 1.58 8.13 -2.38 -0.02 1.56 16 42 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -61.21 337.15 0.45 -60.76 By element: Atomic # 1 Polarization: 41.46 SS G_CDS: 0.39 Total: 41.85 kcal Atomic # 6 Polarization: -86.57 SS G_CDS: 2.90 Total: -83.67 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -0.54 Total: -71.00 kcal Atomic # 8 Polarization: -82.94 SS G_CDS: -4.02 Total: -86.96 kcal Atomic # 14 Polarization: 34.72 SS G_CDS: 2.03 Total: 36.75 kcal Atomic # 16 Polarization: 102.57 SS G_CDS: -0.30 Total: 102.27 kcal Total: -61.21 0.45 -60.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398305337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.237 kcal (2) G-P(sol) polarization free energy of solvation -61.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds