Wall clock time and date at job start Tue Mar 31 2020 12:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99886 * 2 1 4 4 C 1.53000 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.53000 * 113.28216 * 313.07380 * 4 3 2 6 6 C 1.53496 * 114.20683 * 179.97438 * 4 3 2 7 7 N 1.47070 * 87.98766 * 220.15381 * 6 4 3 8 8 C 1.34772 * 136.05497 * 207.09278 * 7 6 4 9 9 O 1.21549 * 120.00567 * 357.68779 * 8 7 6 10 10 C 1.47872 * 119.99445 * 177.69441 * 8 7 6 11 11 C 1.39676 * 120.09734 * 189.68365 * 10 8 7 12 12 C 1.38044 * 120.03681 * 180.02562 * 11 10 8 13 13 C 1.38174 * 120.24233 * 359.97438 * 12 11 10 14 14 C 1.39182 * 120.20624 * 359.74110 * 13 12 11 15 15 S 1.76200 * 120.02536 * 180.25866 * 14 13 12 16 16 C 1.76200 * 99.99654 * 90.31542 * 15 14 13 17 17 H 1.07996 * 120.00464 * 0.73559 * 16 15 14 18 18 C 1.38731 * 119.99629 * 180.73449 * 16 15 14 19 19 N 1.31626 * 119.99657 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00029 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46928 * 90.00117 * 20 18 16 22 22 H 1.48497 * 109.47383 * 209.99804 * 20 18 16 23 23 H 1.48495 * 109.47323 * 330.00512 * 20 18 16 24 24 C 1.38880 * 119.95426 * 0.53167 * 14 13 12 25 25 C 1.47066 * 87.88210 * 27.34461 * 7 6 4 26 26 H 1.09000 * 109.47345 * 300.00122 * 1 2 3 27 27 H 1.09002 * 109.46827 * 60.00002 * 1 2 3 28 28 H 1.09001 * 109.46962 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47092 * 60.00241 * 3 2 1 30 30 H 1.09000 * 109.47575 * 300.00458 * 3 2 1 31 31 H 1.08998 * 109.47029 * 286.92285 * 5 4 3 32 32 H 1.08994 * 109.47292 * 46.92760 * 5 4 3 33 33 H 1.09003 * 109.46685 * 166.93237 * 5 4 3 34 34 H 1.09001 * 113.46153 * 105.37282 * 6 4 3 35 35 H 1.08993 * 113.47193 * 334.93513 * 6 4 3 36 36 H 1.08004 * 119.98336 * 0.02735 * 11 10 8 37 37 H 1.07993 * 119.87513 * 180.02562 * 12 11 10 38 38 H 1.08004 * 119.89634 * 180.02562 * 13 12 11 39 39 H 0.97003 * 119.99444 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.11855 * 179.74590 * 24 14 13 41 41 H 1.08997 * 113.46898 * 87.43787 * 25 7 6 42 42 H 1.09001 * 113.46617 * 217.87722 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.0622 0.1804 1.0277 6 6 4.2734 2.5307 0.0001 7 7 5.2340 1.9447 -0.9470 8 6 6.5281 2.1452 -1.2653 9 8 7.1582 3.0301 -0.7199 10 6 7.1816 1.2886 -2.2781 11 6 8.5640 1.3559 -2.4657 12 6 9.1727 0.5560 -3.4120 13 6 8.4191 -0.3140 -4.1765 14 6 7.0416 -0.3935 -3.9939 15 16 6.0862 -1.5095 -4.9667 16 6 6.1423 -2.9381 -3.9369 17 1 6.6696 -2.9046 -2.9950 18 6 5.5089 -4.1061 -4.3360 19 7 5.5504 -5.1732 -3.5665 20 14 4.5962 -4.1640 -5.9648 21 1 5.5268 -4.5956 -7.0386 22 1 3.4710 -5.1282 -5.8678 23 1 4.0653 -2.8141 -6.2830 24 6 6.4199 0.4114 -3.0482 25 6 4.1590 1.0482 -1.3982 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8464 0.8901 30 1 1.6886 1.8465 -0.8899 31 1 3.9633 0.5991 2.0291 32 1 3.4865 -0.7428 0.9614 33 1 5.1120 -0.0306 0.8241 34 1 4.7141 2.7844 0.9642 35 1 3.6882 3.3464 -0.4242 36 1 9.1572 2.0340 -1.8701 37 1 10.2418 0.6098 -3.5546 38 1 8.9012 -0.9375 -4.9150 39 1 5.1072 -5.9897 -3.8455 40 1 5.3506 0.3548 -2.9072 41 1 3.5436 1.4732 -2.1911 42 1 4.5023 0.0389 -1.6254 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447878303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:30 Heat of formation + Delta-G solvation = -30.843534 kcal Electronic energy + Delta-G solvation = -24624.587146 eV Core-core repulsion = 21082.793675 eV Total energy + Delta-G solvation = -3541.793471 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.07869 -40.21809 -38.93909 -38.19418 -34.68198 -33.49166 -32.05458 -31.95892 -28.47194 -28.24681 -27.88728 -27.31765 -26.27125 -24.30205 -23.69687 -21.21590 -20.07194 -19.66791 -18.51772 -17.87574 -17.48114 -17.16255 -17.09163 -16.83005 -16.70290 -16.15342 -15.92102 -15.48950 -15.11550 -14.94021 -14.72358 -14.48650 -14.21313 -14.05076 -13.89374 -13.61406 -13.15139 -13.10459 -13.04916 -12.90698 -12.73566 -12.57396 -12.43364 -12.22763 -11.90838 -11.84249 -11.39805 -11.21099 -11.02177 -10.92822 -10.49498 -10.12694 -9.87335 -9.70838 -9.13567 -8.49985 -6.24677 -0.25493 0.15573 1.07535 1.33464 1.46135 1.60228 1.65885 1.73775 2.23996 2.55786 2.71679 2.88168 2.94732 3.22123 3.29069 3.69702 3.81970 3.96906 4.01582 4.06329 4.24892 4.31016 4.36409 4.43202 4.48881 4.49938 4.56285 4.58163 4.63107 4.68245 4.70072 4.85029 4.86231 4.94538 4.96417 5.06442 5.17292 5.30396 5.33688 5.36109 5.72153 5.76210 6.14378 6.32384 6.46966 6.92193 6.93292 8.63424 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.008797 B = 0.005318 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3182.210052 B = 5263.967387 C = 7795.146451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.082 3.918 4 C -0.085 4.085 5 C -0.119 4.119 6 C 0.121 3.879 7 N -0.643 5.643 8 C 0.592 3.408 9 O -0.574 6.574 10 C -0.158 4.158 11 C -0.055 4.055 12 C -0.126 4.126 13 C -0.060 4.060 14 C -0.119 4.119 15 S -0.102 6.102 16 C -0.523 4.523 17 H 0.045 0.955 18 C 0.044 3.956 19 N -0.919 5.919 20 Si 0.917 3.083 21 H -0.259 1.259 22 H -0.261 1.261 23 H -0.225 1.225 24 C -0.060 4.060 25 C 0.091 3.909 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.140 0.860 39 H 0.277 0.723 40 H 0.145 0.855 41 H 0.114 0.886 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.718 15.303 5.250 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C 0.005 3.995 4 C -0.086 4.086 5 C -0.176 4.176 6 C 0.000 4.000 7 N -0.376 5.376 8 C 0.384 3.616 9 O -0.456 6.456 10 C -0.163 4.163 11 C -0.074 4.074 12 C -0.145 4.145 13 C -0.081 4.081 14 C -0.230 4.230 15 S 0.131 5.869 16 C -0.670 4.670 17 H 0.063 0.937 18 C -0.161 4.161 19 N -0.557 5.557 20 Si 0.738 3.262 21 H -0.184 1.184 22 H -0.186 1.186 23 H -0.148 1.148 24 C -0.081 4.081 25 C -0.031 4.031 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.104 0.896 35 H 0.135 0.865 36 H 0.165 0.835 37 H 0.186 0.814 38 H 0.158 0.842 39 H 0.086 0.914 40 H 0.162 0.838 41 H 0.132 0.868 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.664 15.558 4.480 17.912 hybrid contribution 0.336 -0.847 0.761 1.188 sum -7.328 14.710 5.241 17.250 Atomic orbital electron populations 1.22887 0.79546 1.03388 1.01093 1.87914 1.21282 1.28527 1.95632 1.22391 0.89600 0.84923 1.02588 1.22194 0.94858 0.96454 0.95060 1.21369 0.99419 0.98685 0.98128 1.23230 0.86998 0.95879 0.93941 1.49360 1.07793 1.39521 1.40890 1.17786 0.80044 0.82537 0.81239 1.90705 1.64175 1.34943 1.55765 1.19962 0.95474 1.00855 0.99983 1.21541 0.92694 0.96956 0.96178 1.21471 1.01695 0.95758 0.95570 1.22121 0.92392 0.95986 0.97573 1.22118 0.97550 1.01231 1.02103 1.82585 1.67026 1.07063 1.30191 1.22348 1.40059 0.97412 1.07174 0.93705 1.25662 0.95735 0.93738 1.00965 1.70041 1.43538 1.02811 1.39296 0.85833 0.79674 0.81516 0.79156 1.18379 1.18574 1.14811 1.22402 1.01222 0.92171 0.92286 1.23713 0.86078 0.94909 0.98406 0.92479 0.93019 0.89729 0.90184 0.90850 0.90223 0.91824 0.94807 0.89590 0.86479 0.83517 0.81404 0.84224 0.91357 0.83777 0.86809 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.64 16 2 O -0.41 -8.92 9.62 -148.98 -1.43 -10.35 16 3 C 0.08 1.28 5.52 71.98 0.40 1.68 16 4 C -0.08 -1.73 1.35 -51.76 -0.07 -1.80 16 5 C -0.12 -2.84 9.13 71.98 0.66 -2.18 16 6 C 0.12 2.35 7.77 83.17 0.65 3.00 16 7 N -0.64 -17.99 3.48 -861.05 -3.00 -20.99 16 8 C 0.59 20.31 7.99 86.80 0.69 21.00 16 9 O -0.57 -22.02 17.16 -3.87 -0.07 -22.08 16 10 C -0.16 -5.55 5.87 -20.10 -0.12 -5.67 16 11 C -0.05 -1.72 9.59 22.57 0.22 -1.50 16 12 C -0.13 -3.67 10.02 22.21 0.22 -3.45 16 13 C -0.06 -2.13 9.79 22.48 0.22 -1.91 16 14 C -0.12 -4.92 5.45 22.65 0.12 -4.80 16 15 S -0.10 -4.81 19.38 -56.49 -1.09 -5.91 16 16 C -0.52 -30.11 10.01 67.94 0.68 -29.43 16 17 H 0.04 2.90 8.02 -2.91 -0.02 2.87 16 18 C 0.04 2.53 5.50 84.84 0.47 2.99 16 19 N -0.92 -55.54 13.97 21.64 0.30 -55.24 16 20 Si 0.92 42.02 27.73 68.60 1.90 43.93 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.22 -9.74 6.74 99.48 0.67 -9.07 16 24 C -0.06 -2.28 8.88 22.70 0.20 -2.08 16 25 C 0.09 2.32 5.54 83.26 0.46 2.78 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.07 0.90 7.90 -2.39 -0.02 0.88 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.70 7.26 -2.39 -0.02 1.68 16 33 H 0.03 0.96 7.93 -2.39 -0.02 0.95 16 34 H 0.09 1.65 8.12 -2.39 -0.02 1.63 16 35 H 0.12 1.60 8.10 -2.39 -0.02 1.58 16 36 H 0.15 4.13 7.68 -2.91 -0.02 4.11 16 37 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.14 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.14 5.27 4.01 -2.91 -0.01 5.26 16 41 H 0.11 2.37 7.94 -2.39 -0.02 2.35 16 42 H 0.07 2.22 6.26 -2.39 -0.01 2.21 16 Total: -1.00 -73.45 364.09 3.64 -69.81 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.98 Total: 20.58 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 6.05 Total: -19.74 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -2.70 Total: -76.23 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -1.50 Total: -32.44 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.90 Total: 43.93 kcal Atomic # 16 Polarization: -4.81 SS G_CDS: -1.09 Total: -5.91 kcal Total: -73.45 3.64 -69.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447878303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.962 kcal (2) G-P(sol) polarization free energy of solvation -73.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds