Wall clock time and date at job start Tue Mar 31 2020 13:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46974 * 2 1 4 4 N 1.46507 * 109.46955 * 119.99726 * 2 1 3 5 5 C 1.34770 * 119.99941 * 290.55954 * 4 2 1 6 6 O 1.21548 * 120.00206 * 215.23796 * 5 4 2 7 7 C 1.47867 * 120.00403 * 35.23602 * 5 4 2 8 8 C 1.39679 * 120.09583 * 325.10452 * 7 5 4 9 9 C 1.38039 * 120.03596 * 179.78693 * 8 7 5 10 10 C 1.38186 * 120.24110 * 0.46664 * 9 8 7 11 11 C 1.39173 * 120.20355 * 359.78682 * 10 9 8 12 12 S 1.76204 * 120.02167 * 179.97438 * 11 10 9 13 13 C 1.76194 * 99.99998 * 274.98955 * 12 11 10 14 14 H 1.08008 * 119.99866 * 4.99954 * 13 12 11 15 15 C 1.38731 * 120.00332 * 184.99987 * 13 12 11 16 16 N 1.31623 * 119.99570 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00042 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46873 * 60.01059 * 17 15 13 19 19 H 1.48507 * 109.46973 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47412 * 300.00437 * 17 15 13 21 21 C 1.38878 * 119.95985 * 359.97438 * 11 10 9 22 22 C 1.46496 * 119.99880 * 110.56073 * 4 2 1 23 23 C 1.54032 * 113.81596 * 220.60792 * 22 4 2 24 24 O 1.44452 * 85.42495 * 223.23782 * 23 22 4 25 25 C 1.44178 * 93.37851 * 24.08663 * 24 23 22 26 26 H 1.08999 * 109.47525 * 254.74142 * 1 2 3 27 27 H 1.08997 * 109.47263 * 14.74736 * 1 2 3 28 28 H 1.09001 * 109.47065 * 134.74703 * 1 2 3 29 29 H 1.08999 * 109.47313 * 239.99947 * 2 1 3 30 30 H 1.09005 * 109.46587 * 214.63420 * 3 2 1 31 31 H 1.08993 * 109.47138 * 334.63553 * 3 2 1 32 32 H 1.08999 * 109.47027 * 94.63971 * 3 2 1 33 33 H 1.07999 * 119.97942 * 0.02562 * 8 7 5 34 34 H 1.07991 * 119.87974 * 180.20801 * 9 8 7 35 35 H 1.08000 * 119.89692 * 179.76686 * 10 9 8 36 36 H 0.97000 * 119.99797 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.12100 * 180.02562 * 21 11 10 38 38 H 1.09005 * 113.00274 * 352.43248 * 22 4 2 39 39 H 1.09001 * 113.86544 * 337.33717 * 23 22 4 40 40 H 1.08991 * 113.86955 * 109.04697 * 23 22 4 41 41 H 1.08994 * 113.86456 * 221.76863 * 25 24 23 42 42 H 1.09001 * 113.98001 * 90.07993 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.8564 -0.1301 2.4112 6 8 2.7100 -0.2722 3.2647 7 6 0.6404 0.6579 2.7059 8 6 0.0485 1.4328 1.7058 9 6 -1.0893 2.1645 1.9811 10 6 -1.6419 2.1417 3.2475 11 6 -1.0573 1.3772 4.2528 12 16 -1.7656 1.3522 5.8661 13 6 -1.0132 2.7898 6.5528 14 1 -0.3944 3.4233 5.9344 15 6 -1.2155 3.1082 7.8879 16 7 -1.9692 2.3360 8.6416 17 14 -0.4173 4.6320 8.6161 18 1 -0.8891 5.8353 7.8849 19 1 -0.7865 4.7471 10.0499 20 1 1.0586 4.5247 8.4926 21 6 0.0846 0.6340 3.9838 22 6 2.6825 -1.9904 1.0718 23 6 2.2865 -2.9986 2.1670 24 8 3.6951 -3.3134 2.2243 25 6 4.0903 -2.0317 1.6955 26 1 -0.3634 -0.2704 0.9914 27 1 -0.3633 0.9938 -0.2616 28 1 -0.3633 -0.7235 -0.7299 29 1 1.8933 -0.5138 -0.8900 30 1 2.9583 1.5032 -0.5841 31 1 1.2856 2.0946 -0.4402 32 1 2.2394 1.7574 1.0243 33 1 0.4790 1.4565 0.7156 34 1 -1.5467 2.7601 1.2052 35 1 -2.5299 2.7192 3.4578 36 1 -2.1105 2.5584 9.5751 37 1 0.5402 0.0395 4.7620 38 1 2.6365 -2.3972 0.0616 39 1 1.9011 -2.5347 3.0749 40 1 1.6644 -3.8182 1.8077 41 1 4.8957 -2.0861 0.9631 42 1 4.2576 -1.2705 2.4576 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452574441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:27 Heat of formation + Delta-G solvation = 40.693464 kcal Electronic energy + Delta-G solvation = -25330.839459 eV Core-core repulsion = 21792.148065 eV Total energy + Delta-G solvation = -3538.691394 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.74651 -40.93449 -39.03743 -38.06788 -34.66839 -33.90053 -32.22951 -31.35088 -29.31482 -28.15284 -27.75545 -27.58274 -25.23779 -24.25921 -22.97283 -21.83539 -20.50615 -19.57938 -18.62890 -18.10888 -17.51268 -17.20272 -17.02913 -16.94389 -16.56153 -16.07102 -15.91149 -15.30511 -15.19354 -14.84689 -14.66240 -14.49012 -14.27089 -13.96467 -13.59916 -13.51290 -13.39272 -12.98600 -12.97139 -12.83722 -12.70785 -12.53771 -12.29419 -12.08368 -12.06226 -11.71878 -11.38499 -11.22432 -11.14683 -10.60076 -10.45054 -9.99843 -9.68761 -9.40684 -8.81303 -8.39968 -6.20634 -0.11538 0.28264 1.25798 1.36844 1.36983 1.45049 1.71492 1.80035 2.22843 2.66495 2.71317 2.92228 3.16383 3.40559 3.41309 3.76621 3.82741 3.94268 3.95124 4.05227 4.07855 4.30146 4.39238 4.42738 4.48564 4.49993 4.60003 4.66956 4.73257 4.81619 4.88695 4.89337 4.91338 5.00265 5.07478 5.20770 5.25776 5.32117 5.36130 5.42035 5.52841 5.65087 5.88926 6.13894 6.23060 6.87315 6.99537 8.66367 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.003742 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.181874 B = 7481.111736 C = 8201.012181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.128 3.872 3 C -0.191 4.191 4 N -0.617 5.617 5 C 0.584 3.416 6 O -0.553 6.553 7 C -0.176 4.176 8 C -0.094 4.094 9 C -0.144 4.144 10 C -0.060 4.060 11 C -0.139 4.139 12 S -0.099 6.099 13 C -0.537 4.537 14 H 0.066 0.934 15 C 0.021 3.979 16 N -0.906 5.906 17 Si 0.991 3.009 18 H -0.259 1.259 19 H -0.270 1.270 20 H -0.272 1.272 21 C -0.044 4.044 22 C 0.106 3.894 23 C 0.015 3.985 24 O -0.401 6.401 25 C 0.008 3.992 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.038 0.962 33 H 0.228 0.772 34 H 0.174 0.826 35 H 0.128 0.872 36 H 0.274 0.726 37 H 0.095 0.905 38 H 0.173 0.827 39 H 0.048 0.952 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.185 -3.919 -26.922 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.026 3.974 3 C -0.248 4.248 4 N -0.352 5.352 5 C 0.376 3.624 6 O -0.431 6.431 7 C -0.181 4.181 8 C -0.110 4.110 9 C -0.163 4.163 10 C -0.081 4.081 11 C -0.251 4.251 12 S 0.136 5.864 13 C -0.685 4.685 14 H 0.084 0.916 15 C -0.185 4.185 16 N -0.543 5.543 17 Si 0.812 3.188 18 H -0.184 1.184 19 H -0.194 1.194 20 H -0.197 1.197 21 C -0.066 4.066 22 C 0.002 3.998 23 C -0.063 4.063 24 O -0.319 6.319 25 C -0.070 4.070 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.157 0.843 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.057 0.943 33 H 0.243 0.757 34 H 0.191 0.809 35 H 0.146 0.854 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.190 0.810 39 H 0.066 0.934 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.940 -5.015 -25.664 26.816 hybrid contribution 0.984 1.456 1.249 2.156 sum 6.924 -3.559 -24.415 25.626 Atomic orbital electron populations 1.23344 0.94738 1.04371 1.02902 1.21695 0.94551 0.93756 0.87398 1.22801 1.04202 0.95542 1.02290 1.47863 1.60779 1.20977 1.05597 1.18361 0.84507 0.77632 0.81946 1.90719 1.42826 1.59686 1.49867 1.20065 0.98334 1.04819 0.94891 1.24237 0.94556 0.90780 1.01427 1.21541 0.97175 1.01120 0.96461 1.22032 0.98473 0.94502 0.93060 1.22356 0.99779 1.02711 1.00221 1.83432 1.59604 1.38836 1.04533 1.23035 1.36265 1.10486 0.98671 0.91625 1.25996 0.95466 1.01040 0.95968 1.70103 1.37283 1.39038 1.07845 0.85119 0.78426 0.77688 0.77541 1.18361 1.19441 1.19728 1.21498 0.93506 0.96365 0.95255 1.24741 0.90679 0.81796 1.02557 1.24578 0.84642 0.99102 0.97942 1.89693 1.20604 1.33556 1.88091 1.24924 0.98893 0.85144 0.98025 0.92566 0.88276 0.89910 0.84263 0.89523 0.87373 0.94323 0.75720 0.80859 0.85443 0.91700 0.88641 0.81018 0.93405 0.85885 0.86440 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.01 7.88 71.98 0.57 -1.45 16 2 C 0.13 1.30 3.28 44.99 0.15 1.45 16 3 C -0.19 -1.98 8.24 71.98 0.59 -1.38 16 4 N -0.62 -12.02 2.63 -812.04 -2.14 -14.16 16 5 C 0.58 17.98 4.65 86.79 0.40 18.38 16 6 O -0.55 -21.92 13.73 -3.87 -0.05 -21.97 16 7 C -0.18 -5.76 4.71 -20.11 -0.09 -5.86 16 8 C -0.09 -2.19 4.47 22.57 0.10 -2.09 16 9 C -0.14 -3.54 9.93 22.21 0.22 -3.32 16 10 C -0.06 -2.15 9.79 22.48 0.22 -1.93 16 11 C -0.14 -6.30 5.45 22.65 0.12 -6.18 16 12 S -0.10 -5.51 21.41 -56.49 -1.21 -6.72 16 13 C -0.54 -32.26 9.46 67.94 0.64 -31.61 16 14 H 0.07 3.90 7.79 -2.91 -0.02 3.88 16 15 C 0.02 1.20 5.49 84.84 0.47 1.67 16 16 N -0.91 -55.58 13.22 21.64 0.29 -55.30 16 17 Si 0.99 45.43 29.55 68.60 2.03 47.46 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 C -0.04 -1.91 9.36 22.70 0.21 -1.70 16 22 C 0.11 1.82 4.64 45.69 0.21 2.03 16 23 C 0.02 0.36 8.56 72.30 0.62 0.97 16 24 O -0.40 -11.01 12.46 -148.98 -1.86 -12.87 16 25 C 0.01 0.17 8.60 72.30 0.62 0.79 16 26 H 0.06 1.03 4.97 -2.39 -0.01 1.02 16 27 H 0.10 0.65 5.58 -2.39 -0.01 0.64 16 28 H 0.08 0.50 8.14 -2.39 -0.02 0.49 16 29 H 0.14 0.36 7.74 -2.39 -0.02 0.34 16 30 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.11 0.54 6.67 -2.39 -0.02 0.52 16 32 H 0.04 0.71 5.58 -2.39 -0.01 0.70 16 33 H 0.23 3.23 0.54 -41.32 -0.02 3.20 16 34 H 0.17 2.57 8.06 -2.92 -0.02 2.54 16 35 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.10 4.64 7.99 -2.91 -0.02 4.61 16 38 H 0.17 1.28 7.84 -2.38 -0.02 1.27 16 39 H 0.05 1.50 6.62 -2.39 -0.02 1.48 16 40 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.08 2.29 5.70 -2.39 -0.01 2.27 16 Total: -1.00 -83.32 342.87 3.15 -80.17 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 1.04 Total: 13.61 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 5.06 Total: -30.23 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.85 Total: -69.46 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.91 Total: -34.84 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -1.21 Total: -6.72 kcal Total: -83.32 3.15 -80.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452574441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.866 kcal (2) G-P(sol) polarization free energy of solvation -83.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds