Wall clock time and date at job start Tue Mar 31 2020 14:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47303 * 112.97600 * 3 2 1 5 5 C 1.34764 * 120.00310 * 179.97438 * 4 3 2 6 6 O 1.21583 * 120.00114 * 0.02562 * 5 4 3 7 7 C 1.47611 * 120.00025 * 179.97438 * 5 4 3 8 8 C 1.39740 * 120.08340 * 179.97438 * 7 5 4 9 9 C 1.37691 * 119.91615 * 180.02562 * 8 7 5 10 10 C 1.39038 * 120.08442 * 0.02562 * 9 8 7 11 11 O 1.35670 * 119.91949 * 179.69789 * 10 9 8 12 12 C 1.35642 * 117.99762 * 77.32553 * 11 10 9 13 13 C 1.39347 * 119.82204 * 3.85971 * 12 11 10 14 14 C 1.36418 * 120.18169 * 179.71562 * 13 12 11 15 15 C 1.40848 * 119.81577 * 0.55343 * 14 13 12 16 16 C 1.41186 * 120.17560 * 179.69896 * 15 14 13 17 17 H 1.08004 * 120.00047 * 204.85431 * 16 15 14 18 18 C 1.39888 * 120.00103 * 24.85412 * 16 15 14 19 19 N 1.30874 * 120.00238 * 18.24977 * 18 16 15 20 20 Si 1.86805 * 120.00044 * 198.24731 * 18 16 15 21 21 H 1.48498 * 109.47274 * 94.97531 * 20 18 16 22 22 H 1.48503 * 109.47134 * 214.98205 * 20 18 16 23 23 H 1.48505 * 109.46762 * 334.98019 * 20 18 16 24 24 C 1.40848 * 119.64415 * 359.72097 * 15 14 13 25 25 C 1.36411 * 119.81612 * 359.97438 * 24 15 14 26 26 C 1.39045 * 120.16576 * 359.97438 * 10 9 8 27 27 C 1.37695 * 120.08662 * 0.02562 * 26 10 9 28 28 H 4.40644 * 5.51374 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47400 * 352.97242 * 3 2 1 30 30 H 1.09004 * 109.46824 * 232.97378 * 3 2 1 31 31 H 0.97002 * 119.98890 * 359.97438 * 4 3 2 32 32 H 1.08008 * 120.04465 * 0.02562 * 8 7 5 33 33 H 1.08004 * 119.96130 * 180.02562 * 9 8 7 34 34 H 1.07999 * 119.90655 * 359.97360 * 13 12 11 35 35 H 1.08007 * 120.09279 * 180.24951 * 14 13 12 36 36 H 0.97001 * 120.00078 * 180.02562 * 19 18 16 37 37 H 1.08002 * 120.08809 * 179.97438 * 24 15 14 38 38 H 1.08003 * 119.91153 * 179.97438 * 25 24 15 39 39 H 1.07993 * 119.95696 * 179.97438 * 26 10 9 40 40 H 1.07989 * 120.04295 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.5400 -1.2717 5 6 4.4590 0.6373 -1.4982 6 8 5.2493 0.2769 -0.6474 7 6 4.9508 1.1802 -2.7797 8 6 6.3242 1.2823 -3.0163 9 6 6.7792 1.7897 -4.2127 10 6 5.8739 2.2008 -5.1846 11 8 6.3258 2.7060 -6.3599 12 6 6.7914 1.8355 -7.2901 13 6 6.7195 0.4642 -7.0534 14 6 7.1802 -0.4180 -7.9864 15 6 7.7403 0.0610 -9.1866 16 6 8.2252 -0.8451 -10.1547 17 1 8.9864 -0.5320 -10.8541 18 6 7.7198 -2.1484 -10.2081 19 7 6.5802 -2.4325 -9.6308 20 14 8.6715 -3.4832 -11.1036 21 1 9.5127 -4.2278 -10.1324 22 1 7.7191 -4.4193 -11.7532 23 1 9.5394 -2.8637 -12.1372 24 6 7.8145 1.4488 -9.4157 25 6 7.3436 2.3176 -8.4753 26 6 4.5066 2.1008 -4.9529 27 6 4.0440 1.5944 -3.7590 28 1 -1.0501 0.0001 0.0003 29 1 3.0098 -1.0191 0.1257 30 1 3.0090 0.6197 0.8205 31 1 2.5035 0.8272 -1.9505 32 1 7.0281 0.9635 -2.2616 33 1 7.8405 1.8686 -4.3964 34 1 6.2940 0.0987 -6.1304 35 1 7.1200 -1.4807 -7.8031 36 1 6.2300 -3.3363 -9.6675 37 1 8.2429 1.8239 -10.3334 38 1 7.4001 3.3820 -8.6492 39 1 3.8064 2.4215 -5.7101 40 1 2.9819 1.5174 -3.5796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490635159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:17 Heat of formation + Delta-G solvation = 38.344304 kcal Electronic energy + Delta-G solvation = -24499.687829 eV Core-core repulsion = 20825.450616 eV Total energy + Delta-G solvation = -3674.237213 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.115 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.54275 -39.66817 -37.73392 -36.46164 -35.77035 -33.51154 -33.02133 -31.04639 -30.64745 -29.70383 -29.14145 -27.31547 -25.22504 -23.46476 -22.67234 -21.25486 -21.16686 -20.31446 -19.30806 -17.95846 -17.52831 -17.38581 -16.55379 -15.90214 -15.69181 -15.34419 -15.08454 -14.99431 -14.22984 -14.03881 -13.89586 -13.72812 -13.48961 -13.15551 -13.00742 -12.83099 -12.45428 -12.34911 -11.95508 -11.77215 -11.35116 -11.24084 -11.18358 -11.05682 -10.89127 -10.69666 -10.19673 -10.10620 -9.88773 -9.55003 -9.42587 -9.13579 -9.05409 -8.56646 -7.74989 -7.16545 -6.82599 -4.35959 0.72299 1.35523 2.00462 2.34642 2.63936 2.71032 2.88745 3.04358 3.07952 3.13279 3.20878 3.65544 3.83569 3.88717 4.17194 4.51320 4.58444 4.75945 4.90415 5.14621 5.19245 5.28451 5.42569 5.45658 5.56851 5.59824 5.96710 5.99996 6.04950 6.11549 6.16594 6.27053 6.50295 6.53035 6.80491 6.83067 6.97350 7.07268 7.17193 7.18941 7.37199 7.46469 7.80162 7.91520 7.95386 8.06748 8.37813 8.56402 8.80272 8.88548 10.11978 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.002586 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.379721 B =10824.977452 C =11816.480231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.210 4.210 3 C 0.231 3.769 4 N -0.729 5.729 5 C 0.569 3.431 6 O -0.537 6.537 7 C -0.160 4.160 8 C -0.041 4.041 9 C -0.148 4.148 10 C 0.154 3.846 11 O -0.277 6.277 12 C -0.027 4.027 13 C -0.156 4.156 14 C -0.136 4.136 15 C 0.094 3.906 16 C -0.459 4.459 17 H 0.079 0.921 18 C 0.075 3.925 19 N -0.794 5.794 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.261 1.261 24 C -0.201 4.201 25 C -0.100 4.100 26 C -0.142 4.142 27 C -0.070 4.070 28 H 0.222 0.778 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.404 0.596 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.281 0.719 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.136 0.864 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 4.078 13.710 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.211 4.211 3 C 0.109 3.891 4 N -0.383 5.383 5 C 0.358 3.642 6 O -0.415 6.415 7 C -0.163 4.163 8 C -0.060 4.060 9 C -0.167 4.167 10 C 0.110 3.890 11 O -0.191 6.191 12 C -0.067 4.067 13 C -0.175 4.175 14 C -0.156 4.156 15 C 0.092 3.908 16 C -0.489 4.489 17 H 0.098 0.902 18 C -0.143 4.143 19 N -0.419 5.419 20 Si 0.733 3.267 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.185 1.185 24 C -0.221 4.221 25 C -0.118 4.118 26 C -0.161 4.161 27 C -0.088 4.088 28 H 0.239 0.761 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.240 0.760 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.113 0.887 35 H 0.139 0.861 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.154 0.846 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.830 3.804 14.312 17.242 hybrid contribution -0.347 -0.716 -0.692 1.055 sum -9.177 3.088 13.620 16.711 Atomic orbital electron populations 1.25050 0.95961 1.00143 0.97577 1.22922 0.94268 1.01259 1.02626 1.18070 0.83105 1.00885 0.87058 1.45885 1.07354 1.66314 1.18704 1.18219 0.81527 0.77533 0.86945 1.90781 1.55182 1.49121 1.46414 1.19725 0.94660 1.07155 0.94739 1.21079 0.94132 0.94522 0.96252 1.21568 1.00972 1.00410 0.93721 1.18968 0.91562 0.92215 0.86224 1.83972 1.78314 1.34279 1.22516 1.18586 1.09816 0.87481 0.90835 1.20620 1.04980 0.91919 0.99961 1.20928 1.02668 0.99040 0.92934 1.17644 0.90028 0.91313 0.91841 1.19525 1.19804 0.95108 1.14451 0.90242 1.25916 0.93894 0.99791 0.94694 1.69836 1.14946 1.21669 1.35450 0.86293 0.80225 0.80140 0.80056 1.19316 1.20281 1.18514 1.20571 1.09223 0.93332 0.98987 1.19599 1.01547 0.98253 0.92440 1.21264 0.95015 1.01534 0.98243 1.21044 0.98780 0.96501 0.92524 0.76082 0.88833 0.88881 0.75999 0.84324 0.84490 0.88684 0.86066 0.90805 0.87945 0.88262 0.84600 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 19.25 29.55 0.57 -0.54 16 2 C -0.21 -1.70 13.46 -37.12 -0.50 -2.20 16 3 C 0.23 2.00 6.15 -6.83 -0.04 1.96 16 4 N -0.73 -7.08 5.49 -64.20 -0.35 -7.44 16 5 C 0.57 7.32 7.76 -12.44 -0.10 7.22 16 6 O -0.54 -8.46 16.34 5.29 0.09 -8.38 16 7 C -0.16 -2.10 5.88 -104.95 -0.62 -2.72 16 8 C -0.04 -0.58 9.58 -39.22 -0.38 -0.95 16 9 C -0.15 -2.30 9.09 -39.48 -0.36 -2.66 16 10 C 0.15 2.61 4.30 -38.99 -0.17 2.44 16 11 O -0.28 -5.51 9.95 -2.11 -0.02 -5.53 16 12 C -0.03 -0.60 6.64 -38.75 -0.26 -0.85 16 13 C -0.16 -3.60 8.91 -39.83 -0.35 -3.96 16 14 C -0.14 -3.47 8.64 -39.25 -0.34 -3.80 16 15 C 0.09 2.44 5.57 -106.80 -0.59 1.85 16 16 C -0.46 -11.84 9.03 -37.85 -0.34 -12.18 16 17 H 0.08 1.96 7.91 -52.48 -0.42 1.55 16 18 C 0.07 1.83 5.12 -17.34 -0.09 1.75 16 19 N -0.79 -20.09 11.00 55.54 0.61 -19.48 16 20 Si 0.91 18.28 29.60 -169.99 -5.03 13.25 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 C -0.20 -4.79 9.74 -39.25 -0.38 -5.17 16 25 C -0.10 -2.22 9.92 -39.82 -0.40 -2.62 16 26 C -0.14 -2.03 9.97 -39.48 -0.39 -2.43 16 27 C -0.07 -0.83 9.53 -39.22 -0.37 -1.20 16 28 H 0.22 0.68 7.80 -54.09 -0.42 0.26 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.40 3.14 6.47 -40.82 -0.26 2.87 16 32 H 0.14 1.84 7.64 -52.48 -0.40 1.44 16 33 H 0.14 2.07 8.06 -52.48 -0.42 1.65 16 34 H 0.10 2.06 6.43 -52.49 -0.34 1.72 16 35 H 0.12 3.19 6.20 -52.48 -0.33 2.86 16 36 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 37 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 38 H 0.10 1.97 8.06 -52.48 -0.42 1.55 16 39 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.13 1.05 6.39 -52.49 -0.34 0.71 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -29.78 357.91 -8.60 -38.38 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -4.17 Total: 9.87 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -5.11 Total: -26.07 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.26 Total: -26.91 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.07 Total: -13.91 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.78 -8.60 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490635159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.724 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds