Wall clock time and date at job start Tue Mar 31 2020 13:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09000 * 109.46887 * 170.59994 * 3 2 1 5 5 C 1.52996 * 109.47224 * 50.60154 * 3 2 1 6 6 C 1.52997 * 109.46973 * 175.00100 * 5 3 2 7 7 C 1.52999 * 109.47306 * 180.02562 * 6 5 3 8 8 N 1.46503 * 109.47033 * 290.59655 * 3 2 1 9 9 S 1.65599 * 120.00071 * 264.72710 * 8 3 2 10 10 O 1.42102 * 104.27491 * 181.07024 * 9 8 3 11 11 O 1.42095 * 104.27793 * 308.92989 * 9 8 3 12 12 C 1.81401 * 104.44871 * 65.00208 * 9 8 3 13 13 C 1.50698 * 109.47087 * 179.97438 * 12 9 8 14 14 C 1.38638 * 119.75028 * 269.72975 * 13 12 9 15 15 C 1.37621 * 120.24373 * 179.72297 * 14 13 12 16 16 C 1.40713 * 119.74705 * 0.56576 * 15 14 13 17 17 C 1.41398 * 120.24609 * 179.68518 * 16 15 14 18 18 H 1.07993 * 120.00012 * 204.41283 * 17 16 15 19 19 C 1.39952 * 119.99669 * 24.40635 * 17 16 15 20 20 N 1.30824 * 120.00207 * 17.84949 * 19 17 16 21 21 Si 1.86801 * 119.99936 * 197.84993 * 19 17 16 22 22 H 1.48505 * 109.47051 * 90.00002 * 21 19 17 23 23 H 1.48494 * 109.46956 * 210.00132 * 21 19 17 24 24 H 1.48501 * 109.46916 * 330.00282 * 21 19 17 25 25 C 1.40718 * 119.51356 * 359.70632 * 16 15 14 26 26 C 1.37616 * 119.74228 * 0.02562 * 25 16 15 27 27 H 4.18746 * 15.03876 * 359.97438 * 4 2 1 28 28 H 1.09004 * 109.46971 * 294.99739 * 5 3 2 29 29 H 1.08995 * 109.47265 * 54.99557 * 5 3 2 30 30 H 1.09004 * 109.46977 * 299.99635 * 6 5 3 31 31 H 1.08995 * 109.47568 * 59.99643 * 6 5 3 32 32 H 1.09004 * 109.46716 * 299.99686 * 7 6 5 33 33 H 1.09005 * 109.47186 * 59.99345 * 7 6 5 34 34 H 1.09002 * 109.47574 * 179.97438 * 7 6 5 35 35 H 0.96995 * 119.99300 * 85.00476 * 8 3 2 36 36 H 1.09003 * 109.46992 * 300.00010 * 12 9 8 37 37 H 1.09003 * 109.46883 * 59.99700 * 12 9 8 38 38 H 1.07994 * 119.87541 * 359.97404 * 14 13 12 39 39 H 1.08000 * 120.12485 * 180.27708 * 15 14 13 40 40 H 0.96993 * 119.99909 * 180.02562 * 20 19 17 41 41 H 1.07995 * 120.13066 * 179.97438 * 25 16 15 42 42 H 1.08002 * 119.87350 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0089 1.0147 -0.1678 5 6 3.1565 -0.9146 -1.1147 6 6 4.6812 -0.8180 -1.1958 7 6 5.1917 -1.7328 -2.3109 8 7 3.1346 -0.4850 1.2930 9 16 3.5344 0.5928 2.4850 10 8 3.9814 -0.2229 3.5593 11 8 4.4121 1.5106 1.8476 12 6 1.9666 1.4008 2.9089 13 6 2.2029 2.4160 3.9973 14 6 2.0956 2.0371 5.3266 15 6 2.3148 2.9544 6.3287 16 6 2.6374 4.2840 5.9998 17 6 2.8583 5.2368 7.0210 18 1 2.7153 6.2879 6.8188 19 6 3.2622 4.8175 8.2937 20 7 3.7685 3.6226 8.4587 21 14 3.0782 5.9641 9.7569 22 1 1.7477 5.7577 10.3833 23 1 4.1433 5.6739 10.7500 24 1 3.1974 7.3722 9.3003 25 6 2.7381 4.6586 4.6472 26 6 2.5201 3.7232 3.6616 27 1 -1.0500 -0.0011 -0.0003 28 1 2.8686 -1.9439 -0.9000 29 1 2.7217 -0.6066 -2.0655 30 1 4.9691 0.2112 -1.4104 31 1 5.1160 -1.1261 -0.2450 32 1 4.9038 -2.7621 -2.0967 33 1 4.7569 -1.4242 -3.2616 34 1 6.2780 -1.6636 -2.3690 35 1 3.2277 -1.4378 1.4493 36 1 1.5650 1.8999 2.0270 37 1 1.2552 0.6527 3.2586 38 1 1.8429 1.0173 5.5765 39 1 2.2351 2.6561 7.3636 40 1 4.0481 3.3319 9.3408 41 1 2.9847 5.6764 4.3835 42 1 2.5973 4.0083 2.6228 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491632868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:34 Heat of formation + Delta-G solvation = -21.004116 kcal Electronic energy + Delta-G solvation = -24272.149185 eV Core-core repulsion = 20730.782383 eV Total energy + Delta-G solvation = -3541.366802 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -37.80846 -37.77080 -36.54436 -35.43794 -34.16530 -33.74115 -32.29395 -31.47845 -29.43074 -28.63832 -27.81387 -24.35826 -24.18239 -21.36353 -21.15073 -20.40181 -19.18302 -18.61293 -17.45658 -17.39618 -16.39131 -15.87184 -15.44607 -15.22578 -14.75370 -14.68061 -14.38516 -14.02380 -13.89272 -13.77352 -12.96191 -12.67192 -12.27113 -12.14557 -12.06672 -11.94107 -11.87690 -11.69054 -11.59762 -11.53521 -11.35928 -11.22336 -11.16189 -11.00197 -10.83653 -10.65699 -10.59009 -10.36660 -10.29008 -9.89716 -9.67427 -9.51322 -9.21444 -7.60662 -7.44242 -6.90511 -4.48567 0.62108 2.43990 2.62802 2.64572 2.96519 3.01267 3.04791 3.10870 3.28160 3.83140 4.02951 4.24939 4.48878 4.55377 4.64741 4.76225 4.85886 5.06566 5.20038 5.30669 5.35658 5.44579 5.55064 5.57867 5.62583 5.79235 5.81544 5.89671 6.07674 6.09273 6.16899 6.20687 6.27084 6.84388 6.93080 6.96930 7.10995 7.19686 7.41070 7.46889 7.67659 7.91045 7.91522 8.13767 8.48851 8.73251 8.81249 10.02930 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.026854 B = 0.002873 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.423464 B = 9742.884804 C =10070.394829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.211 4.211 3 C 0.258 3.742 4 H 0.114 0.886 5 C -0.114 4.114 6 C -0.130 4.130 7 C -0.151 4.151 8 N -1.119 6.119 9 S 2.573 3.427 10 O -0.960 6.960 11 O -0.961 6.961 12 C -0.516 4.516 13 C -0.237 4.237 14 C -0.081 4.081 15 C -0.167 4.167 16 C 0.117 3.883 17 C -0.449 4.449 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.779 5.779 21 Si 0.913 3.087 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.225 4.225 26 C -0.068 4.068 27 H 0.218 0.782 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.413 0.587 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.285 0.715 41 H 0.099 0.901 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.976 -8.670 -14.894 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.213 4.213 3 C 0.150 3.850 4 H 0.131 0.869 5 C -0.153 4.153 6 C -0.167 4.167 7 C -0.209 4.209 8 N -0.873 5.873 9 S 2.673 3.327 10 O -0.950 6.950 11 O -0.950 6.950 12 C -0.647 4.647 13 C -0.242 4.242 14 C -0.101 4.101 15 C -0.186 4.186 16 C 0.114 3.886 17 C -0.478 4.478 18 H 0.101 0.899 19 C -0.147 4.147 20 N -0.403 5.403 21 Si 0.737 3.263 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.245 4.245 26 C -0.087 4.087 27 H 0.235 0.765 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.247 0.753 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.141 0.859 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.921 -8.596 -14.477 17.088 hybrid contribution -0.955 0.001 0.661 1.161 sum -3.875 -8.595 -13.816 16.727 Atomic orbital electron populations 1.25020 0.95912 1.00144 0.98574 1.23716 0.94864 1.01021 1.01701 1.17652 0.82714 1.00190 0.84433 0.86871 1.21815 0.96421 0.99659 0.97359 1.21569 0.94459 1.00945 0.99737 1.21767 1.01081 0.99540 0.98471 1.56112 1.83262 1.21588 1.26350 1.06804 0.78606 0.74298 0.73018 1.93554 1.80333 1.67104 1.54031 1.93528 1.62038 1.64646 1.74829 1.28917 1.19138 1.09631 1.07026 1.18108 1.21206 0.93381 0.91515 1.20612 0.99342 0.97958 0.92144 1.21323 1.04940 0.93933 0.98441 1.17739 0.86624 0.92631 0.91635 1.19744 1.38784 0.95144 0.94102 0.89888 1.26031 0.92260 0.95733 1.00698 1.69826 1.26486 1.18603 1.25358 0.86223 0.78997 0.81101 0.79950 1.19100 1.20113 1.18431 1.20974 1.12152 0.98449 0.92949 1.20459 0.98163 0.92551 0.97544 0.76472 0.90950 0.90316 0.91159 0.91268 0.92844 0.92797 0.92573 0.75315 0.86355 0.86093 0.88742 0.85940 0.90367 0.88313 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 19.25 29.55 0.57 -1.13 16 2 C -0.21 -2.27 12.14 -37.12 -0.45 -2.72 16 3 C 0.26 2.80 2.64 -70.72 -0.19 2.61 16 4 H 0.11 1.26 7.48 -51.93 -0.39 0.88 16 5 C -0.11 -0.97 4.77 -26.74 -0.13 -1.10 16 6 C -0.13 -1.20 5.82 -26.73 -0.16 -1.35 16 7 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 8 N -1.12 -13.88 4.77 -7.30 -0.03 -13.92 16 9 S 2.57 44.97 5.42 -107.50 -0.58 44.39 16 10 O -0.96 -20.13 18.08 -57.54 -1.04 -21.17 16 11 O -0.96 -19.31 17.39 -57.54 -1.00 -20.31 16 12 C -0.52 -8.79 5.83 36.00 0.21 -8.58 16 13 C -0.24 -5.21 5.16 -104.33 -0.54 -5.75 16 14 C -0.08 -1.92 9.67 -39.66 -0.38 -2.30 16 15 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 16 C 0.12 3.09 5.58 -106.82 -0.60 2.50 16 17 C -0.45 -11.60 9.05 -37.74 -0.34 -11.94 16 18 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 19 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 20 N -0.78 -19.85 10.95 55.55 0.61 -19.24 16 21 Si 0.91 18.10 29.60 -169.99 -5.03 13.06 16 22 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 23 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 24 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 25 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16 26 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 27 H 0.22 1.36 7.80 -54.09 -0.42 0.94 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.41 4.32 8.80 -34.47 -0.30 4.02 16 36 H 0.12 1.74 7.69 -51.92 -0.40 1.34 16 37 H 0.12 1.80 8.08 -51.92 -0.42 1.38 16 38 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 39 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 40 H 0.29 6.56 8.30 -40.82 -0.34 6.22 16 41 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -32.09 373.64 -10.29 -42.38 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.01 Total: 10.49 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: -2.82 Total: -41.32 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.57 Total: -33.16 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -2.04 Total: -41.47 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 16 Polarization: 44.97 SS G_CDS: -0.58 Total: 44.39 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.09 -10.29 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491632868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.372 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds