Wall clock time and date at job start Tue Mar 31 2020 13:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09000 * 109.46887 * 170.59994 * 3 2 1 5 5 C 1.52996 * 109.47224 * 50.60154 * 3 2 1 6 6 C 1.52997 * 109.46973 * 175.00100 * 5 3 2 7 7 C 1.52999 * 109.47306 * 180.02562 * 6 5 3 8 8 N 1.46503 * 109.47033 * 290.59655 * 3 2 1 9 9 S 1.65599 * 120.00071 * 264.72710 * 8 3 2 10 10 O 1.42102 * 104.27491 * 181.07024 * 9 8 3 11 11 O 1.42095 * 104.27793 * 308.92989 * 9 8 3 12 12 C 1.81401 * 104.44871 * 65.00208 * 9 8 3 13 13 C 1.50698 * 109.47087 * 179.97438 * 12 9 8 14 14 C 1.38638 * 119.75028 * 269.72975 * 13 12 9 15 15 C 1.37621 * 120.24373 * 179.72297 * 14 13 12 16 16 C 1.40713 * 119.74705 * 0.56576 * 15 14 13 17 17 C 1.41398 * 120.24609 * 179.68518 * 16 15 14 18 18 H 1.07993 * 120.00012 * 204.41283 * 17 16 15 19 19 C 1.39952 * 119.99669 * 24.40635 * 17 16 15 20 20 N 1.30824 * 120.00207 * 17.84949 * 19 17 16 21 21 Si 1.86801 * 119.99936 * 197.84993 * 19 17 16 22 22 H 1.48505 * 109.47051 * 90.00002 * 21 19 17 23 23 H 1.48494 * 109.46956 * 210.00132 * 21 19 17 24 24 H 1.48501 * 109.46916 * 330.00282 * 21 19 17 25 25 C 1.40718 * 119.51356 * 359.70632 * 16 15 14 26 26 C 1.37616 * 119.74228 * 0.02562 * 25 16 15 27 27 H 4.18746 * 15.03876 * 359.97438 * 4 2 1 28 28 H 1.09004 * 109.46971 * 294.99739 * 5 3 2 29 29 H 1.08995 * 109.47265 * 54.99557 * 5 3 2 30 30 H 1.09004 * 109.46977 * 299.99635 * 6 5 3 31 31 H 1.08995 * 109.47568 * 59.99643 * 6 5 3 32 32 H 1.09004 * 109.46716 * 299.99686 * 7 6 5 33 33 H 1.09005 * 109.47186 * 59.99345 * 7 6 5 34 34 H 1.09002 * 109.47574 * 179.97438 * 7 6 5 35 35 H 0.96995 * 119.99300 * 85.00476 * 8 3 2 36 36 H 1.09003 * 109.46992 * 300.00010 * 12 9 8 37 37 H 1.09003 * 109.46883 * 59.99700 * 12 9 8 38 38 H 1.07994 * 119.87541 * 359.97404 * 14 13 12 39 39 H 1.08000 * 120.12485 * 180.27708 * 15 14 13 40 40 H 0.96993 * 119.99909 * 180.02562 * 20 19 17 41 41 H 1.07995 * 120.13066 * 179.97438 * 25 16 15 42 42 H 1.08002 * 119.87350 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0089 1.0147 -0.1678 5 6 3.1565 -0.9146 -1.1147 6 6 4.6812 -0.8180 -1.1958 7 6 5.1917 -1.7328 -2.3109 8 7 3.1346 -0.4850 1.2930 9 16 3.5344 0.5928 2.4850 10 8 3.9814 -0.2229 3.5593 11 8 4.4121 1.5106 1.8476 12 6 1.9666 1.4008 2.9089 13 6 2.2029 2.4160 3.9973 14 6 2.0956 2.0371 5.3266 15 6 2.3148 2.9544 6.3287 16 6 2.6374 4.2840 5.9998 17 6 2.8583 5.2368 7.0210 18 1 2.7153 6.2879 6.8188 19 6 3.2622 4.8175 8.2937 20 7 3.7685 3.6226 8.4587 21 14 3.0782 5.9641 9.7569 22 1 1.7477 5.7577 10.3833 23 1 4.1433 5.6739 10.7500 24 1 3.1974 7.3722 9.3003 25 6 2.7381 4.6586 4.6472 26 6 2.5201 3.7232 3.6616 27 1 -1.0500 -0.0011 -0.0003 28 1 2.8686 -1.9439 -0.9000 29 1 2.7217 -0.6066 -2.0655 30 1 4.9691 0.2112 -1.4104 31 1 5.1160 -1.1261 -0.2450 32 1 4.9038 -2.7621 -2.0967 33 1 4.7569 -1.4242 -3.2616 34 1 6.2780 -1.6636 -2.3690 35 1 3.2277 -1.4378 1.4493 36 1 1.5650 1.8999 2.0270 37 1 1.2552 0.6527 3.2586 38 1 1.8429 1.0173 5.5765 39 1 2.2351 2.6561 7.3636 40 1 4.0481 3.3319 9.3408 41 1 2.9847 5.6764 4.3835 42 1 2.5973 4.0083 2.6228 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491632868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:33 Heat of formation + Delta-G solvation = -40.996158 kcal Electronic energy + Delta-G solvation = -24273.016105 eV Core-core repulsion = 20730.782383 eV Total energy + Delta-G solvation = -3542.233722 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.60558 -38.70959 -38.03290 -36.97737 -35.97062 -34.49005 -33.28847 -33.08979 -31.30127 -29.60402 -29.35845 -26.00426 -25.05907 -23.03804 -22.20514 -22.03666 -20.53015 -19.40723 -19.30967 -18.74943 -17.61814 -17.20494 -17.17531 -16.29064 -16.06683 -15.79548 -15.65217 -15.52011 -15.47162 -14.75937 -14.39098 -13.92971 -13.81454 -13.73044 -13.61433 -13.18071 -13.11598 -13.06633 -12.98373 -12.79613 -12.75563 -12.70633 -12.59036 -12.21765 -12.03149 -11.89750 -11.58676 -11.51561 -11.41737 -11.36722 -11.09654 -11.05271 -10.77570 -9.49406 -9.30361 -8.72303 -6.42148 -0.79356 0.85855 1.04761 1.37509 1.49035 1.51243 1.52093 1.88589 2.17578 2.21569 2.61070 2.83032 3.20235 3.37875 3.63494 3.74411 3.88308 3.95466 4.06357 4.18062 4.34325 4.41486 4.48373 4.53909 4.66266 4.68587 4.91810 4.97401 4.99078 5.01919 5.07495 5.15505 5.23586 5.29399 5.32810 5.38025 5.49688 5.59403 5.81541 6.00575 6.02072 6.04208 6.26309 6.58963 6.68293 6.83466 6.91380 8.24541 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.026854 B = 0.002873 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.423464 B = 9742.884804 C =10070.394829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.245 4.245 3 C 0.251 3.749 4 H 0.108 0.892 5 C -0.107 4.107 6 C -0.135 4.135 7 C -0.149 4.149 8 N -1.101 6.101 9 S 2.596 3.404 10 O -0.998 6.998 11 O -0.989 6.989 12 C -0.518 4.518 13 C -0.233 4.233 14 C -0.092 4.092 15 C -0.194 4.194 16 C 0.085 3.915 17 C -0.488 4.488 18 H 0.084 0.916 19 C 0.032 3.968 20 N -0.818 5.818 21 Si 0.989 3.011 22 H -0.260 1.260 23 H -0.268 1.268 24 H -0.255 1.255 25 C -0.244 4.244 26 C -0.076 4.076 27 H 0.247 0.753 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.425 0.575 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.292 0.708 41 H 0.107 0.893 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 -9.546 -16.762 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.247 4.247 3 C 0.145 3.855 4 H 0.126 0.874 5 C -0.146 4.146 6 C -0.172 4.172 7 C -0.206 4.206 8 N -0.860 5.860 9 S 2.695 3.305 10 O -0.989 6.989 11 O -0.979 6.979 12 C -0.650 4.650 13 C -0.237 4.237 14 C -0.112 4.112 15 C -0.213 4.213 16 C 0.082 3.918 17 C -0.516 4.516 18 H 0.102 0.898 19 C -0.185 4.185 20 N -0.443 5.443 21 Si 0.809 3.191 22 H -0.184 1.184 23 H -0.192 1.192 24 H -0.179 1.179 25 C -0.263 4.263 26 C -0.095 4.095 27 H 0.263 0.737 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.261 0.739 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.293 -9.458 -16.336 19.359 hybrid contribution -0.594 0.106 0.967 1.140 sum -4.886 -9.352 -15.369 18.643 Atomic orbital electron populations 1.25783 0.96678 0.98496 0.96724 1.23701 0.95020 1.02582 1.03374 1.17840 0.83421 1.00519 0.83759 0.87405 1.21808 0.95669 0.99863 0.97224 1.21607 0.95171 1.00817 0.99653 1.21747 1.01010 0.99553 0.98291 1.55569 1.83153 1.21395 1.25887 1.05550 0.78084 0.74058 0.72788 1.93510 1.81170 1.68008 1.56180 1.93501 1.63120 1.65926 1.75348 1.28970 1.19972 1.09368 1.06650 1.18501 1.18647 0.94336 0.92197 1.20920 0.99061 0.98446 0.92753 1.21337 1.06847 0.94705 0.98447 1.18099 0.87638 0.93218 0.92853 1.19987 1.40941 0.95228 0.95484 0.89798 1.26925 0.91101 0.97321 1.03110 1.69883 1.27521 1.20498 1.26399 0.85096 0.79195 0.78799 0.75993 1.18405 1.19240 1.17880 1.21226 1.12692 0.99525 0.92895 1.20852 0.97371 0.92608 0.98670 0.73696 0.89753 0.88545 0.92077 0.92803 0.92090 0.91684 0.92789 0.73853 0.83380 0.83391 0.86973 0.87472 0.89703 0.87483 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 19.25 74.32 1.43 -0.94 16 2 C -0.24 -4.43 12.14 31.12 0.38 -4.05 16 3 C 0.25 4.83 2.64 43.18 0.11 4.95 16 4 H 0.11 2.19 7.48 -2.39 -0.02 2.18 16 5 C -0.11 -1.55 4.77 30.59 0.15 -1.40 16 6 C -0.13 -2.28 5.82 30.59 0.18 -2.10 16 7 C -0.15 -1.95 9.91 71.98 0.71 -1.23 16 8 N -1.10 -25.03 4.77 -177.02 -0.84 -25.88 16 9 S 2.60 87.19 5.42 -56.49 -0.31 86.89 16 10 O -1.00 -41.31 18.08 -127.65 -2.31 -43.62 16 11 O -0.99 -38.93 17.39 -127.65 -2.22 -41.15 16 12 C -0.52 -16.35 5.83 71.24 0.41 -15.93 16 13 C -0.23 -10.01 5.16 -19.67 -0.10 -10.11 16 14 C -0.09 -4.42 9.67 22.22 0.21 -4.20 16 15 C -0.19 -10.47 8.70 22.73 0.20 -10.27 16 16 C 0.08 4.67 5.58 -21.29 -0.12 4.55 16 17 C -0.49 -26.29 9.05 23.46 0.21 -26.07 16 18 H 0.08 4.30 7.91 -2.91 -0.02 4.27 16 19 C 0.03 1.60 5.14 85.26 0.44 2.03 16 20 N -0.82 -43.37 10.95 21.83 0.24 -43.13 16 21 Si 0.99 37.82 29.60 68.60 2.03 39.85 16 22 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 23 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 25 C -0.24 -12.19 9.80 22.73 0.22 -11.97 16 26 C -0.08 -3.39 9.67 22.22 0.21 -3.17 16 27 H 0.25 1.90 7.80 -4.42 -0.03 1.87 16 28 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.05 1.06 7.75 -2.39 -0.02 1.04 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.69 16 33 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.43 7.98 8.80 -96.75 -0.85 7.12 16 36 H 0.15 3.82 7.69 -2.39 -0.02 3.80 16 37 H 0.15 3.91 8.08 -2.39 -0.02 3.89 16 38 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.11 5.99 6.16 -2.91 -0.02 5.97 16 40 H 0.29 13.91 8.30 -92.71 -0.77 13.15 16 41 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 42 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -72.02 373.64 1.41 -70.61 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: 0.16 Total: 36.37 kcal Atomic # 6 Polarization: -84.59 SS G_CDS: 4.66 Total: -79.93 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: -0.61 Total: -69.01 kcal Atomic # 8 Polarization: -80.25 SS G_CDS: -4.53 Total: -84.78 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Atomic # 16 Polarization: 87.19 SS G_CDS: -0.31 Total: 86.89 kcal Total: -72.02 1.41 -70.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491632868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.614 kcal (2) G-P(sol) polarization free energy of solvation -72.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds