Wall clock time and date at job start Tue Mar 31 2020 13:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47029 * 234.54218 * 3 2 1 5 5 C 1.53001 * 109.46983 * 114.54457 * 3 2 1 6 6 N 1.46498 * 109.47048 * 354.54274 * 3 2 1 7 7 C 1.46503 * 119.99723 * 172.34013 * 6 3 2 8 8 S 1.65599 * 120.00235 * 352.34499 * 6 3 2 9 9 O 1.42101 * 104.27703 * 323.31553 * 8 6 3 10 10 O 1.42100 * 104.27931 * 195.45707 * 8 6 3 11 11 C 1.81399 * 104.45221 * 79.38437 * 8 6 3 12 12 C 1.50699 * 109.47400 * 180.02562 * 11 8 6 13 13 C 1.38630 * 119.75001 * 270.25486 * 12 11 8 14 14 C 1.37620 * 120.24813 * 180.25882 * 13 12 11 15 15 C 1.40715 * 119.74444 * 359.46704 * 14 13 12 16 16 C 1.41396 * 120.24168 * 180.30265 * 15 14 13 17 17 H 1.07994 * 120.00528 * 29.53400 * 16 15 14 18 18 C 1.39951 * 119.99708 * 209.53222 * 16 15 14 19 19 N 1.30827 * 119.99735 * 11.17693 * 18 16 15 20 20 Si 1.86799 * 120.00144 * 191.17961 * 18 16 15 21 21 H 1.48497 * 109.47110 * 59.99660 * 20 18 16 22 22 H 1.48497 * 109.47259 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46728 * 300.00034 * 20 18 16 24 24 C 1.40714 * 119.51265 * 0.27653 * 15 14 13 25 25 C 1.37623 * 119.74094 * 359.97438 * 24 15 14 26 26 H 4.44651 * 5.63392 * 180.02562 * 4 1 2 27 27 H 1.08998 * 109.46999 * 185.14827 * 4 3 2 28 28 H 1.08999 * 109.47237 * 305.14904 * 4 3 2 29 29 H 1.09005 * 109.46874 * 65.14900 * 4 3 2 30 30 H 1.09003 * 109.46865 * 299.99753 * 5 3 2 31 31 H 1.08997 * 109.46934 * 59.99917 * 5 3 2 32 32 H 1.08995 * 109.46859 * 179.97438 * 5 3 2 33 33 H 1.08996 * 109.47259 * 270.00225 * 7 6 3 34 34 H 1.08997 * 109.47424 * 30.00446 * 7 6 3 35 35 H 1.09007 * 109.46969 * 150.00176 * 7 6 3 36 36 H 1.09004 * 109.47099 * 59.99738 * 11 8 6 37 37 H 1.09004 * 109.47222 * 300.00168 * 11 8 6 38 38 H 1.07998 * 119.87528 * 0.02562 * 13 12 11 39 39 H 1.08007 * 120.12481 * 179.74105 * 14 13 12 40 40 H 0.97003 * 119.99708 * 179.97438 * 19 18 16 41 41 H 1.07996 * 120.13308 * 180.02562 * 24 15 14 42 42 H 1.08002 * 119.86884 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.8377 1.1750 5 6 3.1557 0.6001 -1.3122 6 7 3.1349 -1.3741 0.1314 7 6 4.5647 -1.6597 -0.0112 8 16 2.0714 -2.6051 0.4408 9 8 1.1146 -2.0291 1.3193 10 8 2.8961 -3.6834 0.8611 11 6 1.3193 -2.9691 -1.1692 12 6 0.3201 -4.0867 -1.0158 13 6 0.7315 -5.4023 -1.1633 14 6 -0.1734 -6.4307 -1.0307 15 6 -1.5183 -6.1431 -0.7331 16 6 -2.4555 -7.1919 -0.5882 17 1 -2.1329 -8.1593 -0.2328 18 6 -3.8015 -6.9762 -0.9053 19 7 -4.1583 -5.8876 -1.5372 20 14 -5.0885 -8.2425 -0.4262 21 1 -5.0902 -8.4128 1.0490 22 1 -6.4275 -7.7807 -0.8723 23 1 -4.7708 -9.5404 -1.0739 24 6 -1.9235 -4.8043 -0.5803 25 6 -1.0023 -3.7917 -0.7225 26 1 -1.0502 -0.0003 -0.0001 27 1 4.2416 0.9141 1.1226 28 1 2.7185 1.8350 1.1272 29 1 2.8697 0.3601 2.1122 30 1 2.7926 0.0038 -2.1492 31 1 2.7919 1.6229 -1.4098 32 1 4.2456 0.6010 -1.3120 33 1 4.7903 -1.8729 -1.0560 34 1 5.1424 -0.7953 0.3162 35 1 4.8254 -2.5236 0.6004 36 1 2.0954 -3.2692 -1.8734 37 1 0.8136 -2.0790 -1.5436 38 1 1.7653 -5.6209 -1.3869 39 1 0.1485 -7.4548 -1.1501 40 1 -5.0912 -5.7383 -1.7573 41 1 -2.9531 -4.5722 -0.3515 42 1 -1.3110 -2.7634 -0.6053 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491677790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:50 Heat of formation + Delta-G solvation = 8.017634 kcal Electronic energy + Delta-G solvation = -25223.314841 eV Core-core repulsion = 21683.206516 eV Total energy + Delta-G solvation = -3540.108324 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.41284 -37.77820 -36.65485 -35.35889 -34.11679 -32.91298 -31.48039 -30.91274 -29.44215 -27.83355 -27.45487 -26.50479 -24.16580 -21.98059 -21.15332 -20.34641 -19.56844 -17.83435 -17.40517 -16.48991 -16.27433 -16.01857 -15.40087 -14.70319 -14.58264 -14.45588 -14.17365 -13.87406 -13.77520 -13.37009 -12.71890 -12.66508 -12.44699 -12.26269 -12.16998 -12.04829 -11.90738 -11.78774 -11.70454 -11.59996 -11.50680 -11.43029 -11.25428 -11.14503 -10.81619 -10.76081 -10.37518 -10.14430 -9.89215 -9.79116 -9.48960 -9.29385 -8.99489 -7.60245 -7.36754 -6.84126 -4.49009 0.65327 2.52803 2.66615 2.92213 2.95696 3.02265 3.05089 3.12353 3.30769 3.86274 4.08152 4.28350 4.53339 4.55891 4.74355 4.95535 4.98984 5.30627 5.35658 5.40625 5.43706 5.45749 5.54496 5.57094 5.60952 5.74169 5.80640 5.89602 6.09071 6.12488 6.20201 6.22487 6.27138 6.67682 6.83879 6.96017 7.10273 7.20325 7.48537 7.66705 7.68649 7.90290 7.93202 8.15496 8.50601 8.75834 8.82008 10.09674 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.026205 B = 0.003410 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.259412 B = 8208.050800 C = 8705.751822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.241 4.241 3 C 0.301 3.699 4 C -0.151 4.151 5 C -0.152 4.152 6 N -1.005 6.005 7 C 0.086 3.914 8 S 2.577 3.423 9 O -0.947 6.947 10 O -0.967 6.967 11 C -0.522 4.522 12 C -0.227 4.227 13 C -0.074 4.074 14 C -0.220 4.220 15 C 0.118 3.882 16 C -0.454 4.454 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.793 5.793 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.158 4.158 25 C -0.082 4.082 26 H 0.222 0.778 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.283 0.717 41 H 0.123 0.877 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.995 12.515 -0.582 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.242 4.242 3 C 0.214 3.786 4 C -0.209 4.209 5 C -0.211 4.211 6 N -0.841 5.841 7 C -0.059 4.059 8 S 2.679 3.321 9 O -0.937 6.937 10 O -0.957 6.957 11 C -0.653 4.653 12 C -0.232 4.232 13 C -0.093 4.093 14 C -0.240 4.240 15 C 0.115 3.885 16 C -0.484 4.484 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.418 5.418 20 Si 0.739 3.261 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.178 4.178 25 C -0.102 4.102 26 H 0.239 0.761 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.141 0.859 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.776 12.305 0.200 16.358 hybrid contribution -0.827 -0.356 -0.646 1.108 sum 9.950 11.949 -0.446 15.556 Atomic orbital electron populations 1.24964 0.95788 0.94479 0.98334 1.22462 0.93752 1.05428 1.02588 1.16684 0.83235 0.82327 0.96363 1.22134 1.01150 0.99660 0.98001 1.22164 1.01698 1.01299 0.95935 1.58050 1.18390 1.18676 1.89020 1.21490 0.80138 1.02584 1.01714 1.06571 0.73932 0.72695 0.78914 1.93589 1.61976 1.75944 1.62230 1.93493 1.67133 1.54040 1.81035 1.29024 1.09237 1.06784 1.20259 1.18148 0.93266 0.91165 1.20585 1.20493 0.97579 0.92284 0.98972 1.21055 0.94691 0.97045 1.11216 1.17736 0.91353 0.93009 0.86416 1.19672 0.91931 0.98513 1.38269 0.90070 1.25965 0.99736 0.96295 0.92558 1.69781 1.19410 1.24920 1.27702 0.86254 0.78759 0.80868 0.80224 1.18695 1.20226 1.18904 1.21339 0.99100 0.92264 1.05073 1.20596 0.92299 0.97918 0.99357 0.76132 0.91558 0.91309 0.91406 0.91642 0.91163 0.91216 0.92915 0.91027 0.89686 0.86477 0.86155 0.88698 0.88266 0.90602 0.85921 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 17.55 29.55 0.52 -1.12 16 2 C -0.24 -3.40 7.96 -37.12 -0.30 -3.70 16 3 C 0.30 3.61 0.97 -134.61 -0.13 3.48 16 4 C -0.15 -1.56 8.46 37.16 0.31 -1.25 16 5 C -0.15 -1.35 8.31 37.16 0.31 -1.05 16 6 N -1.01 -13.57 3.00 -110.65 -0.33 -13.90 16 7 C 0.09 0.90 9.39 59.85 0.56 1.46 16 8 S 2.58 46.74 4.81 -107.50 -0.52 46.22 16 9 O -0.95 -19.49 14.44 -57.54 -0.83 -20.32 16 10 O -0.97 -20.01 16.40 -57.54 -0.94 -20.96 16 11 C -0.52 -9.20 6.11 36.01 0.22 -8.98 16 12 C -0.23 -5.03 5.16 -104.33 -0.54 -5.57 16 13 C -0.07 -1.69 9.67 -39.66 -0.38 -2.08 16 14 C -0.22 -5.44 9.80 -38.87 -0.38 -5.83 16 15 C 0.12 3.14 5.54 -106.83 -0.59 2.55 16 16 C -0.45 -11.86 9.06 -37.74 -0.34 -12.20 16 17 H 0.08 2.02 7.87 -52.49 -0.41 1.61 16 18 C 0.07 1.78 5.24 -17.34 -0.09 1.69 16 19 N -0.79 -19.99 10.92 55.55 0.61 -19.38 16 20 Si 0.91 18.31 29.57 -169.99 -5.03 13.29 16 21 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 24 C -0.16 -4.09 8.65 -38.87 -0.34 -4.43 16 25 C -0.08 -1.93 9.67 -39.66 -0.38 -2.31 16 26 H 0.22 2.49 7.80 -54.08 -0.42 2.07 16 27 H 0.07 0.53 7.17 -51.93 -0.37 0.16 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.49 7.42 -51.93 -0.39 0.10 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.55 6.84 -51.93 -0.36 0.20 16 35 H 0.08 0.99 6.88 -51.93 -0.36 0.64 16 36 H 0.12 1.77 8.08 -51.92 -0.42 1.35 16 37 H 0.12 1.92 6.66 -51.92 -0.35 1.57 16 38 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 39 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 40 H 0.28 6.48 8.30 -40.82 -0.34 6.15 16 41 H 0.12 3.23 6.30 -52.49 -0.33 2.90 16 42 H 0.09 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -31.95 360.21 -9.08 -41.03 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.92 Total: 7.91 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: -1.55 Total: -39.32 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.28 Total: -33.29 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -1.77 Total: -41.27 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.29 kcal Atomic # 16 Polarization: 46.74 SS G_CDS: -0.52 Total: 46.22 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.95 -9.08 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491677790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.051 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds