Wall clock time and date at job start Tue Mar 31 2020 12:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38424 * 122.53692 * 2 1 4 4 C 1.33392 * 114.92011 * 179.97438 * 3 2 1 5 5 S 1.75889 * 109.58969 * 359.75440 * 4 3 2 6 6 C 1.33385 * 122.53895 * 179.97438 * 2 1 3 7 7 C 1.50697 * 125.20398 * 0.02562 * 6 2 1 8 8 H 1.09002 * 115.56522 * 334.30790 * 7 6 2 9 9 C 1.53083 * 117.51258 * 188.60943 * 7 6 2 10 10 C 1.53001 * 117.49894 * 120.00092 * 7 6 2 11 11 H 1.09004 * 117.50004 * 215.00235 * 10 7 6 12 12 C 1.50696 * 117.49889 * 0.02562 * 10 7 6 13 13 O 1.21283 * 120.00304 * 359.90850 * 12 10 7 14 14 N 1.34779 * 120.00254 * 179.91529 * 12 10 7 15 15 C 1.47431 * 125.64440 * 0.04139 * 14 12 10 16 16 C 1.54914 * 104.82868 * 204.09186 * 15 14 12 17 17 C 1.55150 * 101.58274 * 322.98978 * 16 15 14 18 18 O 1.42894 * 110.87311 * 277.06857 * 17 16 15 19 19 C 1.50699 * 110.72132 * 153.86305 * 17 16 15 20 20 H 1.08002 * 120.00516 * 246.47371 * 19 17 16 21 21 C 1.37884 * 119.99783 * 66.47671 * 19 17 16 22 22 N 1.31514 * 119.99707 * 0.02562 * 21 19 17 23 23 Si 1.86796 * 119.99956 * 180.27458 * 21 19 17 24 24 H 1.48497 * 109.47172 * 179.72730 * 23 21 19 25 25 H 1.48506 * 109.47132 * 299.72429 * 23 21 19 26 26 H 1.48501 * 109.47173 * 59.72550 * 23 21 19 27 27 C 1.47016 * 125.65174 * 179.97438 * 14 12 10 28 28 H 1.08997 * 109.47172 * 270.02253 * 1 2 3 29 29 H 1.08998 * 109.47504 * 30.02823 * 1 2 3 30 30 H 1.09003 * 109.46936 * 150.02088 * 1 2 3 31 31 H 1.07999 * 122.53659 * 359.95675 * 3 2 1 32 32 H 1.07994 * 125.20431 * 180.02562 * 4 3 2 33 33 H 1.08998 * 117.49501 * 145.03681 * 9 7 6 34 34 H 1.08996 * 117.51148 * 359.97438 * 9 7 6 35 35 H 1.08998 * 110.36423 * 322.92625 * 15 14 12 36 36 H 1.08995 * 110.36716 * 85.14221 * 15 14 12 37 37 H 1.08998 * 111.00356 * 204.91079 * 16 15 14 38 38 H 1.09002 * 111.00079 * 81.06570 * 16 15 14 39 39 H 0.96700 * 114.00479 * 296.05311 * 18 17 16 40 40 H 0.97005 * 119.99656 * 179.97438 * 22 21 19 41 41 H 1.09004 * 109.87975 * 59.56320 * 27 14 12 42 42 H 1.08993 * 110.01537 * 298.46997 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9902 0.0005 5 16 3.9385 -0.7304 0.0082 6 6 2.2244 -1.1245 0.0005 7 6 1.6537 -2.5192 0.0006 8 1 0.6553 -2.6188 0.4265 9 6 2.6281 -3.6820 0.2044 10 6 2.0146 -3.4303 -1.1744 11 1 1.2534 -4.1290 -1.5218 12 6 2.9141 -2.8644 -2.2429 13 8 3.3218 -1.7258 -2.1521 14 7 3.2655 -3.6237 -3.2996 15 6 2.8433 -5.0165 -3.5351 16 6 3.9386 -5.6127 -4.4542 17 6 4.2732 -4.4025 -5.3656 18 8 3.3400 -4.3032 -6.4431 19 6 5.6821 -4.5039 -5.8907 20 1 6.4265 -3.7848 -5.5822 21 6 6.0209 -5.5148 -6.7650 22 7 5.1143 -6.3901 -7.1411 23 14 7.7692 -5.6451 -7.4099 24 1 7.8747 -6.8123 -8.3217 25 1 8.1174 -4.4056 -8.1502 26 1 8.7052 -5.8207 -6.2705 27 6 4.1320 -3.1997 -4.4090 28 1 -0.3633 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.7963 2.1464 -0.0007 32 1 4.3077 1.7823 0.0010 33 1 2.2704 -4.5461 0.7643 34 1 3.6820 -3.4383 0.3380 35 1 2.7990 -5.5637 -2.5936 36 1 1.8739 -5.0400 -4.0328 37 1 3.5474 -6.4455 -5.0386 38 1 4.8101 -5.9188 -3.8755 39 1 3.3618 -5.0534 -7.0529 40 1 5.3525 -7.1011 -7.7565 41 1 5.1117 -2.9140 -4.0258 42 1 3.6802 -2.3587 -4.9348 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:43 Heat of formation + Delta-G solvation = -15.985737 kcal Electronic energy + Delta-G solvation = -25168.891812 eV Core-core repulsion = 21627.742624 eV Total energy + Delta-G solvation = -3541.149189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.95917 -38.35426 -37.36138 -35.87497 -34.30464 -32.16936 -30.71151 -29.78716 -28.42952 -27.50190 -25.61853 -23.62030 -23.25797 -22.02276 -21.43292 -19.65606 -18.99737 -18.30523 -17.27523 -16.91317 -16.34024 -15.36349 -15.12138 -14.93682 -14.89664 -14.39612 -14.13013 -13.81713 -13.51411 -13.01697 -12.96140 -12.91702 -12.22500 -12.15377 -12.06724 -11.91651 -11.79299 -11.57392 -11.48307 -11.36808 -11.34256 -10.89046 -10.75779 -10.63265 -10.52022 -10.43222 -10.26030 -10.13027 -9.47609 -9.34935 -8.67611 -8.24078 -8.13729 -7.99268 -7.44556 -6.31192 -4.37995 1.26117 2.04276 2.38647 2.81720 3.03614 3.20684 3.25420 3.28740 3.50803 3.94429 4.25369 4.51636 4.71338 4.79938 4.95791 5.07339 5.13310 5.25237 5.50794 5.52562 5.55134 5.62483 5.66059 5.67349 5.76597 5.83168 5.89549 5.92297 6.01236 6.02391 6.23096 6.34593 6.46801 6.68003 6.70237 6.80953 6.90283 6.97925 7.27590 7.31958 7.71888 8.00008 8.15459 8.62930 8.70370 9.30116 9.43734 10.76853 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.003375 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.178216 B = 8293.417011 C = 8759.098181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.119 4.119 3 C -0.136 4.136 4 C -0.236 4.236 5 S 0.179 5.821 6 C -0.134 4.134 7 C -0.054 4.054 8 H 0.126 0.874 9 C -0.149 4.149 10 C -0.171 4.171 11 H 0.126 0.874 12 C 0.538 3.462 13 O -0.528 6.528 14 N -0.603 5.603 15 C 0.096 3.904 16 C -0.137 4.137 17 C 0.248 3.752 18 O -0.586 6.586 19 C -0.535 4.535 20 H 0.064 0.936 21 C 0.073 3.927 22 N -0.898 5.898 23 Si 0.903 3.097 24 H -0.285 1.285 25 H -0.274 1.274 26 H -0.275 1.275 27 C 0.125 3.875 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.128 0.872 32 H 0.155 0.845 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.385 0.615 40 H 0.269 0.731 41 H 0.070 0.930 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 4.777 15.072 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C -0.168 4.168 4 C -0.373 4.373 5 S 0.448 5.552 6 C -0.252 4.252 7 C -0.074 4.074 8 H 0.144 0.856 9 C -0.187 4.187 10 C -0.193 4.193 11 H 0.144 0.856 12 C 0.326 3.674 13 O -0.407 6.407 14 N -0.336 5.336 15 C -0.027 4.027 16 C -0.175 4.175 17 C 0.208 3.792 18 O -0.396 6.396 19 C -0.573 4.573 20 H 0.082 0.918 21 C -0.130 4.130 22 N -0.538 5.538 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.200 1.200 26 H -0.201 1.201 27 C 0.004 3.996 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.172 0.828 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.237 0.763 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.170 4.994 15.366 17.295 hybrid contribution -0.255 0.033 -0.955 0.989 sum -6.425 5.027 14.410 16.559 Atomic orbital electron populations 1.20421 0.90617 1.02316 1.01344 1.18536 0.96773 0.91611 1.06249 1.19771 0.92859 0.98565 1.05635 1.25564 0.99730 1.00134 1.11854 1.83815 1.04945 0.98736 1.67683 1.23265 0.96618 0.96024 1.09300 1.20428 0.99528 0.86726 1.00721 0.85591 1.23145 0.99330 0.99753 0.96493 1.22399 1.02947 1.04054 0.89856 0.85605 1.19298 0.80939 0.85571 0.81640 1.90880 1.56060 1.17593 1.76155 1.48597 1.48825 1.14302 1.21837 1.22468 0.99297 0.81720 0.99198 1.23309 0.96179 1.00555 0.97502 1.19431 0.88162 0.87883 0.83757 1.86108 1.61873 1.50434 1.41219 1.21517 0.94954 1.12997 1.27856 0.91811 1.24978 0.98064 0.94640 0.95275 1.69568 1.34006 1.16100 1.34149 0.86463 0.83899 0.77721 0.78839 1.21087 1.19977 1.20053 1.22034 0.93087 0.98533 0.85988 0.91987 0.92023 0.91942 0.85388 0.82781 0.87038 0.88227 0.92192 0.92109 0.89747 0.91489 0.76305 0.92063 0.91177 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.72 36.01 0.35 -0.60 16 2 C -0.12 -1.66 5.80 -106.25 -0.62 -2.27 16 3 C -0.14 -1.86 9.98 -41.21 -0.41 -2.27 16 4 C -0.24 -3.30 11.23 29.04 0.33 -2.98 16 5 S 0.18 2.70 18.94 -107.50 -2.04 0.67 16 6 C -0.13 -1.95 4.59 -36.01 -0.17 -2.11 16 7 C -0.05 -0.66 5.47 -91.73 -0.50 -1.16 16 8 H 0.13 1.22 7.53 -51.93 -0.39 0.83 16 9 C -0.15 -1.70 9.75 -26.69 -0.26 -1.96 16 10 C -0.17 -2.33 5.26 -91.77 -0.48 -2.81 16 11 H 0.13 1.48 7.78 -51.93 -0.40 1.07 16 12 C 0.54 9.82 7.60 -10.99 -0.08 9.74 16 13 O -0.53 -10.77 11.69 5.55 0.06 -10.71 16 14 N -0.60 -11.79 3.33 -170.52 -0.57 -12.36 16 15 C 0.10 1.71 6.47 -2.52 -0.02 1.69 16 16 C -0.14 -2.90 5.68 -24.58 -0.14 -3.04 16 17 C 0.25 5.96 0.85 -89.94 -0.08 5.88 16 18 O -0.59 -14.82 13.07 -35.23 -0.46 -15.28 16 19 C -0.53 -13.95 8.21 -34.44 -0.28 -14.23 16 20 H 0.06 1.67 7.53 -52.49 -0.40 1.27 16 21 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 22 N -0.90 -22.90 10.72 55.43 0.59 -22.31 16 23 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 24 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.13 2.83 6.22 -3.06 -0.02 2.81 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.06 0.66 7.24 -51.93 -0.38 0.29 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.15 1.80 8.06 -52.49 -0.42 1.37 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 1.26 7.27 -51.93 -0.38 0.88 16 35 H 0.06 0.89 7.67 -51.93 -0.40 0.49 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.85 7.77 -51.93 -0.40 1.45 16 38 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 39 H 0.39 9.77 7.04 45.56 0.32 10.09 16 40 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 41 H 0.07 1.61 7.63 -51.93 -0.40 1.22 16 42 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 LS Contribution 351.29 15.07 5.29 5.29 Total: -1.00 -28.75 351.29 -9.93 -38.69 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -5.33 Total: 12.40 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -2.47 Total: -11.55 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.03 Total: -34.67 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.40 Total: -25.99 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.04 Total: 0.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.75 -9.93 -38.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.703 kcal (2) G-P(sol) polarization free energy of solvation -28.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds