Wall clock time and date at job start Tue Mar 31 2020 12:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38424 * 122.53692 * 2 1 4 4 C 1.33392 * 114.92011 * 179.97438 * 3 2 1 5 5 S 1.75889 * 109.58969 * 359.75440 * 4 3 2 6 6 C 1.33385 * 122.53895 * 179.97438 * 2 1 3 7 7 C 1.50697 * 125.20398 * 0.02562 * 6 2 1 8 8 H 1.09002 * 115.56522 * 334.30790 * 7 6 2 9 9 C 1.53083 * 117.51258 * 188.60943 * 7 6 2 10 10 C 1.53001 * 117.49894 * 120.00092 * 7 6 2 11 11 H 1.09004 * 117.50004 * 215.00235 * 10 7 6 12 12 C 1.50696 * 117.49889 * 0.02562 * 10 7 6 13 13 O 1.21283 * 120.00304 * 359.90850 * 12 10 7 14 14 N 1.34779 * 120.00254 * 179.91529 * 12 10 7 15 15 C 1.47431 * 125.64440 * 0.04139 * 14 12 10 16 16 C 1.54914 * 104.82868 * 204.09186 * 15 14 12 17 17 C 1.55150 * 101.58274 * 322.98978 * 16 15 14 18 18 O 1.42894 * 110.87311 * 277.06857 * 17 16 15 19 19 C 1.50699 * 110.72132 * 153.86305 * 17 16 15 20 20 H 1.08002 * 120.00516 * 246.47371 * 19 17 16 21 21 C 1.37884 * 119.99783 * 66.47671 * 19 17 16 22 22 N 1.31514 * 119.99707 * 0.02562 * 21 19 17 23 23 Si 1.86796 * 119.99956 * 180.27458 * 21 19 17 24 24 H 1.48497 * 109.47172 * 179.72730 * 23 21 19 25 25 H 1.48506 * 109.47132 * 299.72429 * 23 21 19 26 26 H 1.48501 * 109.47173 * 59.72550 * 23 21 19 27 27 C 1.47016 * 125.65174 * 179.97438 * 14 12 10 28 28 H 1.08997 * 109.47172 * 270.02253 * 1 2 3 29 29 H 1.08998 * 109.47504 * 30.02823 * 1 2 3 30 30 H 1.09003 * 109.46936 * 150.02088 * 1 2 3 31 31 H 1.07999 * 122.53659 * 359.95675 * 3 2 1 32 32 H 1.07994 * 125.20431 * 180.02562 * 4 3 2 33 33 H 1.08998 * 117.49501 * 145.03681 * 9 7 6 34 34 H 1.08996 * 117.51148 * 359.97438 * 9 7 6 35 35 H 1.08998 * 110.36423 * 322.92625 * 15 14 12 36 36 H 1.08995 * 110.36716 * 85.14221 * 15 14 12 37 37 H 1.08998 * 111.00356 * 204.91079 * 16 15 14 38 38 H 1.09002 * 111.00079 * 81.06570 * 16 15 14 39 39 H 0.96700 * 114.00479 * 296.05311 * 18 17 16 40 40 H 0.97005 * 119.99656 * 179.97438 * 22 21 19 41 41 H 1.09004 * 109.87975 * 59.56320 * 27 14 12 42 42 H 1.08993 * 110.01537 * 298.46997 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9902 0.0005 5 16 3.9385 -0.7304 0.0082 6 6 2.2244 -1.1245 0.0005 7 6 1.6537 -2.5192 0.0006 8 1 0.6553 -2.6188 0.4265 9 6 2.6281 -3.6820 0.2044 10 6 2.0146 -3.4303 -1.1744 11 1 1.2534 -4.1290 -1.5218 12 6 2.9141 -2.8644 -2.2429 13 8 3.3218 -1.7258 -2.1521 14 7 3.2655 -3.6237 -3.2996 15 6 2.8433 -5.0165 -3.5351 16 6 3.9386 -5.6127 -4.4542 17 6 4.2732 -4.4025 -5.3656 18 8 3.3400 -4.3032 -6.4431 19 6 5.6821 -4.5039 -5.8907 20 1 6.4265 -3.7848 -5.5822 21 6 6.0209 -5.5148 -6.7650 22 7 5.1143 -6.3901 -7.1411 23 14 7.7692 -5.6451 -7.4099 24 1 7.8747 -6.8123 -8.3217 25 1 8.1174 -4.4056 -8.1502 26 1 8.7052 -5.8207 -6.2705 27 6 4.1320 -3.1997 -4.4090 28 1 -0.3633 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.7963 2.1464 -0.0007 32 1 4.3077 1.7823 0.0010 33 1 2.2704 -4.5461 0.7643 34 1 3.6820 -3.4383 0.3380 35 1 2.7990 -5.5637 -2.5936 36 1 1.8739 -5.0400 -4.0328 37 1 3.5474 -6.4455 -5.0386 38 1 4.8101 -5.9188 -3.8755 39 1 3.3618 -5.0534 -7.0529 40 1 5.3525 -7.1011 -7.7565 41 1 5.1117 -2.9140 -4.0258 42 1 3.6802 -2.3587 -4.9348 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:42 Heat of formation + Delta-G solvation = -32.876902 kcal Electronic energy + Delta-G solvation = -25169.624268 eV Core-core repulsion = 21627.742624 eV Total energy + Delta-G solvation = -3541.881645 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.29781 -39.69089 -38.72218 -37.05739 -36.05673 -34.16420 -31.77226 -31.38190 -30.11592 -28.51643 -27.33704 -25.06081 -24.23021 -23.44794 -22.44647 -21.43366 -20.23423 -19.56814 -19.15502 -18.15482 -17.55879 -16.97227 -16.76040 -16.38888 -16.18837 -15.83443 -15.54391 -15.01265 -14.81153 -14.65671 -14.14414 -13.92065 -13.82106 -13.57862 -13.30101 -13.23356 -13.16499 -13.11008 -12.91712 -12.71080 -12.63665 -12.44133 -12.37250 -12.28713 -11.99258 -11.74072 -11.42867 -11.33344 -11.26334 -10.78929 -10.61301 -10.15254 -9.60610 -9.10576 -8.65330 -8.26812 -6.40561 0.19562 0.98101 1.31462 1.41286 1.43040 1.50185 1.61335 1.90344 2.09091 2.38781 2.94041 2.98935 3.44829 3.66764 3.83367 3.86878 4.00130 4.04628 4.17836 4.29049 4.34973 4.42183 4.59954 4.61526 4.67290 4.68537 4.70674 4.82938 4.87556 4.92042 4.93440 5.04101 5.18323 5.19835 5.30019 5.31703 5.46066 5.50925 5.66594 5.75183 5.82147 6.06376 6.59978 6.71528 7.26489 7.30460 7.43990 8.79598 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.003375 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.178216 B = 8293.417011 C = 8759.098181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.131 4.131 3 C -0.144 4.144 4 C -0.246 4.246 5 S 0.122 5.878 6 C -0.144 4.144 7 C -0.052 4.052 8 H 0.161 0.839 9 C -0.132 4.132 10 C -0.180 4.180 11 H 0.154 0.846 12 C 0.528 3.472 13 O -0.555 6.555 14 N -0.610 5.610 15 C 0.107 3.893 16 C -0.127 4.127 17 C 0.236 3.764 18 O -0.595 6.595 19 C -0.565 4.565 20 H 0.050 0.950 21 C 0.038 3.962 22 N -0.907 5.907 23 Si 0.958 3.042 24 H -0.276 1.276 25 H -0.279 1.279 26 H -0.273 1.273 27 C 0.135 3.865 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.150 0.850 32 H 0.170 0.830 33 H 0.152 0.848 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.382 0.618 40 H 0.273 0.727 41 H 0.053 0.947 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.330 3.822 16.660 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.144 4.144 3 C -0.176 4.176 4 C -0.382 4.382 5 S 0.392 5.608 6 C -0.262 4.262 7 C -0.072 4.072 8 H 0.178 0.822 9 C -0.170 4.170 10 C -0.202 4.202 11 H 0.171 0.829 12 C 0.318 3.682 13 O -0.435 6.435 14 N -0.343 5.343 15 C -0.015 4.015 16 C -0.166 4.166 17 C 0.195 3.805 18 O -0.405 6.405 19 C -0.603 4.603 20 H 0.068 0.932 21 C -0.163 4.163 22 N -0.546 5.546 23 Si 0.784 3.216 24 H -0.200 1.200 25 H -0.204 1.204 26 H -0.198 1.198 27 C 0.012 3.988 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.167 0.833 32 H 0.187 0.813 33 H 0.170 0.830 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.233 0.767 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.905 4.035 16.976 19.157 hybrid contribution 0.293 0.445 -1.457 1.551 sum -7.613 4.480 15.519 17.857 Atomic orbital electron populations 1.20482 0.88272 1.02826 1.02863 1.19014 0.98582 0.91397 1.05372 1.20162 0.92824 0.99773 1.04817 1.25815 1.00559 0.99587 1.12208 1.83949 1.07351 1.00572 1.68972 1.23601 0.95418 0.97648 1.09536 1.20703 1.01205 0.85564 0.99712 0.82205 1.23302 0.98449 1.00650 0.94591 1.22398 1.03174 1.05550 0.89055 0.82864 1.20261 0.80866 0.85263 0.81824 1.90888 1.57011 1.18964 1.76611 1.48674 1.48856 1.15196 1.21551 1.22454 0.97937 0.80729 1.00385 1.23081 0.97063 0.99101 0.97359 1.19579 0.87192 0.89745 0.83937 1.86092 1.62174 1.50485 1.41741 1.21739 0.95960 1.13424 1.29217 0.93218 1.25572 1.01262 0.94242 0.95214 1.69620 1.35033 1.16020 1.33946 0.85611 0.80099 0.77600 0.78302 1.20049 1.20441 1.19789 1.21667 0.92876 0.97362 0.86929 0.89852 0.91464 0.91515 0.83271 0.81299 0.83039 0.90043 0.88180 0.91313 0.90587 0.92398 0.76686 0.91726 0.92830 0.94559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.72 71.24 0.69 -0.90 16 2 C -0.13 -3.42 5.80 -20.92 -0.12 -3.54 16 3 C -0.14 -3.78 9.98 21.22 0.21 -3.57 16 4 C -0.25 -6.87 11.23 66.72 0.75 -6.12 16 5 S 0.12 3.76 18.94 -56.49 -1.07 2.69 16 6 C -0.14 -3.99 4.59 24.59 0.11 -3.87 16 7 C -0.05 -1.10 5.47 -11.51 -0.06 -1.17 16 8 H 0.16 2.32 7.53 -2.39 -0.02 2.30 16 9 C -0.13 -2.56 9.75 30.62 0.30 -2.26 16 10 C -0.18 -4.36 5.26 -11.54 -0.06 -4.42 16 11 H 0.15 2.87 7.78 -2.38 -0.02 2.85 16 12 C 0.53 18.86 7.60 87.66 0.67 19.53 16 13 O -0.55 -22.95 11.69 -3.04 -0.04 -22.98 16 14 N -0.61 -23.62 3.33 -811.79 -2.70 -26.32 16 15 C 0.11 3.61 6.47 86.86 0.56 4.17 16 16 C -0.13 -5.37 5.68 31.99 0.18 -5.18 16 17 C 0.24 11.57 0.85 -10.35 -0.01 11.57 16 18 O -0.59 -30.72 13.07 -148.98 -1.95 -32.67 16 19 C -0.57 -30.30 8.21 25.60 0.21 -30.09 16 20 H 0.05 2.72 7.53 -2.91 -0.02 2.70 16 21 C 0.04 1.97 5.29 84.66 0.45 2.42 16 22 N -0.91 -46.24 10.72 21.45 0.23 -46.01 16 23 Si 0.96 41.52 29.54 68.60 2.03 43.54 16 24 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 C 0.13 6.32 6.22 86.73 0.54 6.86 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 30 H 0.07 1.19 7.24 -2.39 -0.02 1.17 16 31 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.17 3.96 8.06 -2.91 -0.02 3.94 16 33 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 1.93 7.27 -2.39 -0.02 1.91 16 35 H 0.10 2.60 7.67 -2.39 -0.02 2.58 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.08 3.31 7.77 -2.39 -0.02 3.29 16 38 H 0.06 2.51 8.04 -2.39 -0.02 2.49 16 39 H 0.38 19.75 7.04 -74.06 -0.52 19.23 16 40 H 0.27 13.24 8.31 -92.70 -0.77 12.47 16 41 H 0.05 2.62 7.63 -2.38 -0.02 2.60 16 42 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16 Total: -1.00 -64.23 351.29 1.44 -62.79 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.52 Total: 35.54 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 4.42 Total: -16.60 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: -2.47 Total: -72.33 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: -1.98 Total: -55.65 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.07 Total: 2.69 kcal Total: -64.23 1.44 -62.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.914 kcal (2) G-P(sol) polarization free energy of solvation -64.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds