Wall clock time and date at job start Tue Mar 31 2020 12:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37881 * 120.06614 * 2 1 4 4 C 1.38392 * 120.20536 * 180.25755 * 3 2 1 5 5 C 1.38688 * 120.32618 * 359.48422 * 4 3 2 6 6 F 1.35097 * 119.93891 * 180.25565 * 5 4 3 7 7 C 1.38068 * 120.11850 * 0.23336 * 5 4 3 8 8 C 1.39896 * 119.79886 * 0.02562 * 7 5 4 9 9 C 1.47394 * 120.16046 * 180.02562 * 8 7 5 10 10 O 1.21363 * 120.00279 * 173.71684 * 9 8 7 11 11 C 1.49291 * 120.00065 * 353.71131 * 9 8 7 12 12 O 1.21358 * 120.00123 * 5.77557 * 11 9 8 13 13 N 1.34780 * 119.99824 * 185.77724 * 11 9 8 14 14 C 1.47421 * 125.64989 * 359.69257 * 13 11 9 15 15 C 1.55127 * 104.72440 * 155.81899 * 14 13 11 16 16 C 1.55161 * 101.48505 * 37.29171 * 15 14 13 17 17 O 1.42896 * 110.71651 * 82.69991 * 16 15 14 18 18 C 1.50706 * 110.87157 * 205.90104 * 16 15 14 19 19 H 1.08000 * 120.00224 * 355.06384 * 18 16 15 20 20 C 1.37873 * 119.99789 * 175.06789 * 18 16 15 21 21 N 1.31513 * 119.99924 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99969 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47444 * 89.99636 * 22 20 18 24 24 H 1.48497 * 109.46990 * 209.99870 * 22 20 18 25 25 H 1.48506 * 109.46909 * 329.99326 * 22 20 18 26 26 C 1.47023 * 125.64519 * 180.02562 * 13 11 9 27 27 H 1.09004 * 109.46633 * 263.40722 * 1 2 3 28 28 H 1.09000 * 109.46703 * 23.40214 * 1 2 3 29 29 H 1.08998 * 109.47162 * 143.40558 * 1 2 3 30 30 H 1.08000 * 119.90204 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.83962 * 179.76485 * 4 3 2 32 32 H 1.08002 * 120.09404 * 180.02562 * 7 5 4 33 33 H 1.09005 * 110.36675 * 274.74627 * 14 13 11 34 34 H 1.09001 * 110.36517 * 37.07022 * 14 13 11 35 35 H 1.09001 * 111.19062 * 279.19129 * 15 14 13 36 36 H 1.09000 * 110.91286 * 155.27642 * 15 14 13 37 37 H 0.96711 * 113.99755 * 185.02441 * 17 16 15 38 38 H 0.97002 * 119.99756 * 180.02562 * 21 20 18 39 39 H 1.09002 * 109.88525 * 300.43905 * 26 13 11 40 40 H 1.08994 * 109.88299 * 61.44894 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1933 0.0000 4 6 3.5816 1.1967 -0.0054 5 6 4.2848 0.0013 0.0000 6 9 5.6358 0.0137 -0.0001 7 6 3.6068 -1.2014 0.0058 8 6 2.2078 -1.2108 0.0059 9 6 1.4759 -2.4901 0.0127 10 8 0.2677 -2.4974 0.1277 11 6 2.2206 -3.7769 -0.1220 12 8 3.4341 -3.7776 -0.1317 13 7 1.5451 -4.9380 -0.2330 14 6 0.0780 -5.0822 -0.2294 15 6 -0.1892 -6.4129 -0.9807 16 6 0.9947 -7.2877 -0.4903 17 8 0.7004 -7.8698 0.7811 18 6 1.3270 -8.3563 -1.4997 19 1 0.7116 -8.4788 -2.3788 20 6 2.4165 -9.1774 -1.3010 21 7 3.1661 -9.0279 -0.2308 22 14 2.8288 -10.5015 -2.5526 23 1 3.7483 -9.9450 -3.5773 24 1 3.4848 -11.6437 -1.8669 25 1 1.5809 -10.9684 -3.2084 26 6 2.1496 -6.2711 -0.3707 27 1 -0.3633 -0.1180 1.0209 28 1 -0.3633 0.9432 -0.4082 29 1 -0.3633 -0.8251 -0.6126 30 1 1.6572 2.1283 0.0004 31 1 4.1167 2.1348 -0.0092 32 1 4.1548 -2.1320 0.0104 33 1 -0.2950 -5.1398 0.7932 34 1 -0.3863 -4.2492 -0.7572 35 1 -0.1487 -6.2706 -2.0606 36 1 -1.1442 -6.8441 -0.6807 37 1 1.4368 -8.3634 1.1676 38 1 3.9329 -9.6054 -0.0912 39 1 2.7689 -6.3066 -1.2670 40 1 2.7553 -6.4960 0.5072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000649029745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:15 Heat of formation + Delta-G solvation = -120.894466 kcal Electronic energy + Delta-G solvation = -27076.177323 eV Core-core repulsion = 22964.265774 eV Total energy + Delta-G solvation = -4111.911549 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.94492 -40.84169 -39.13407 -38.07832 -37.38733 -34.41992 -32.54994 -32.29175 -31.68020 -30.25487 -28.05295 -27.37817 -26.00081 -24.76695 -23.27611 -22.38670 -21.18134 -19.75635 -19.27664 -17.51740 -17.27385 -17.15097 -16.27809 -16.11194 -15.90361 -15.61667 -15.32687 -15.10517 -14.72842 -14.47298 -14.24865 -13.98127 -13.63048 -13.36275 -13.12491 -13.02329 -12.86662 -12.55999 -12.22489 -12.06083 -11.89143 -11.77563 -11.64141 -11.55159 -11.10230 -10.90497 -10.74030 -10.67450 -10.53053 -10.23171 -9.39154 -9.33980 -9.00791 -8.74599 -8.71310 -8.39326 -8.13116 -6.34544 -4.43366 0.18866 0.99223 1.60371 2.93607 3.10001 3.18420 3.26123 3.28847 3.56762 4.02488 4.18761 4.25215 4.42917 4.60042 4.74938 4.87605 4.93975 5.03059 5.36558 5.47746 5.48411 5.54026 5.72442 5.73024 5.74344 5.81546 5.90854 5.99043 6.00538 6.11170 6.28155 6.42624 6.61198 6.67686 6.74850 6.75969 7.03014 7.14931 7.27682 7.66820 7.87936 7.96704 8.29428 8.60682 9.22642 9.31859 10.73337 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.003377 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.911781 B = 8288.962937 C = 9298.343664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.032 4.032 3 C -0.117 4.117 4 C -0.115 4.115 5 C 0.071 3.929 6 F -0.137 7.137 7 C -0.095 4.095 8 C -0.139 4.139 9 C 0.392 3.608 10 O -0.412 6.412 11 C 0.485 3.515 12 O -0.526 6.526 13 N -0.575 5.575 14 C 0.097 3.903 15 C -0.120 4.120 16 C 0.248 3.752 17 O -0.583 6.583 18 C -0.538 4.538 19 H 0.068 0.932 20 C 0.071 3.929 21 N -0.895 5.895 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.097 3.903 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.186 0.814 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.382 0.618 38 H 0.271 0.729 39 H 0.074 0.926 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 17.963 0.678 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.032 4.032 3 C -0.135 4.135 4 C -0.134 4.134 5 C 0.052 3.948 6 F -0.116 7.116 7 C -0.113 4.113 8 C -0.141 4.141 9 C 0.266 3.734 10 O -0.285 6.285 11 C 0.270 3.730 12 O -0.406 6.406 13 N -0.307 5.307 14 C -0.025 4.025 15 C -0.158 4.158 16 C 0.207 3.793 17 O -0.392 6.392 18 C -0.576 4.576 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.533 5.533 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.196 1.196 26 C -0.023 4.023 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.203 0.797 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.233 0.767 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.498 18.196 0.729 18.543 hybrid contribution 1.378 -0.888 -0.488 1.710 sum -2.120 17.307 0.242 17.438 Atomic orbital electron populations 1.21109 0.89647 1.03359 1.03751 1.20284 0.97112 0.91543 0.94300 1.20832 0.92985 0.97833 1.01856 1.21455 0.94993 0.97382 0.99558 1.17655 0.77363 0.94369 1.05446 1.91517 1.28569 1.97356 1.94114 1.22740 0.94347 1.00082 0.94141 1.19775 0.93376 0.93131 1.07814 1.22536 0.88355 0.89441 0.73066 1.90500 1.15748 1.89072 1.33137 1.20159 0.87778 0.84625 0.80460 1.90496 1.13161 1.85596 1.51364 1.48932 1.09056 1.07134 1.65564 1.22689 0.79409 0.99070 1.01314 1.22858 1.00136 0.93402 0.99426 1.19515 0.87695 0.89010 0.83030 1.86127 1.44237 1.72624 1.36213 1.21494 1.12316 1.16392 1.07441 0.91403 1.25077 0.95261 0.97228 0.95686 1.69685 1.17487 1.39370 1.26777 0.86383 0.78650 0.80834 0.80964 1.20384 1.20950 1.19644 1.23273 0.98595 0.78116 1.02343 0.90167 0.91775 0.89016 0.84388 0.84410 0.79748 0.90976 0.90190 0.90347 0.90220 0.76724 0.91910 0.90757 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 8.72 36.00 0.31 -0.87 16 2 C -0.03 -0.36 5.92 -104.13 -0.62 -0.97 16 3 C -0.12 -1.07 9.66 -39.66 -0.38 -1.46 16 4 C -0.11 -1.13 10.02 -39.36 -0.39 -1.52 16 5 C 0.07 0.90 7.29 -39.48 -0.29 0.61 16 6 F -0.14 -1.84 17.26 2.25 0.04 -1.80 16 7 C -0.09 -1.37 9.28 -39.02 -0.36 -1.73 16 8 C -0.14 -1.94 5.88 -104.93 -0.62 -2.56 16 9 C 0.39 6.16 7.07 -31.26 -0.22 5.94 16 10 O -0.41 -6.26 10.87 5.49 0.06 -6.20 16 11 C 0.48 9.21 7.86 -11.66 -0.09 9.12 16 12 O -0.53 -10.93 13.75 5.49 0.08 -10.85 16 13 N -0.57 -11.55 3.32 -170.95 -0.57 -12.11 16 14 C 0.10 1.75 5.98 -2.41 -0.01 1.73 16 15 C -0.12 -2.35 6.24 -24.46 -0.15 -2.50 16 16 C 0.25 5.81 0.85 -89.93 -0.08 5.74 16 17 O -0.58 -14.24 13.07 -35.23 -0.46 -14.70 16 18 C -0.54 -13.69 8.13 -34.44 -0.28 -13.97 16 19 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 20 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 21 N -0.89 -23.18 10.96 55.43 0.61 -22.58 16 22 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 C 0.10 2.26 5.23 -3.06 -0.02 2.24 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.46 8.04 -51.93 -0.42 0.05 16 29 H 0.09 1.02 5.89 -51.93 -0.31 0.72 16 30 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.19 3.04 4.85 -52.51 -0.25 2.79 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.28 6.31 -51.93 -0.33 0.95 16 35 H 0.08 1.46 8.04 -51.93 -0.42 1.05 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.38 9.53 7.45 45.56 0.34 9.87 16 38 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 39 H 0.07 1.86 7.81 -51.93 -0.41 1.46 16 40 H 0.07 1.83 7.92 -51.93 -0.41 1.42 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -27.28 336.46 -7.35 -34.63 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -3.86 Total: 12.02 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -3.29 Total: 1.51 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.04 Total: -34.69 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.33 Total: -31.76 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.28 -7.35 -34.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000649029745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.266 kcal (2) G-P(sol) polarization free energy of solvation -27.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds