Wall clock time and date at job start Tue Mar 31 2020 12:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37881 * 120.06614 * 2 1 4 4 C 1.38392 * 120.20536 * 180.25755 * 3 2 1 5 5 C 1.38688 * 120.32618 * 359.48422 * 4 3 2 6 6 F 1.35097 * 119.93891 * 180.25565 * 5 4 3 7 7 C 1.38068 * 120.11850 * 0.23336 * 5 4 3 8 8 C 1.39896 * 119.79886 * 0.02562 * 7 5 4 9 9 C 1.47394 * 120.16046 * 180.02562 * 8 7 5 10 10 O 1.21363 * 120.00279 * 173.71684 * 9 8 7 11 11 C 1.49291 * 120.00065 * 353.71131 * 9 8 7 12 12 O 1.21358 * 120.00123 * 5.77557 * 11 9 8 13 13 N 1.34780 * 119.99824 * 185.77724 * 11 9 8 14 14 C 1.47421 * 125.64989 * 359.69257 * 13 11 9 15 15 C 1.55127 * 104.72440 * 155.81899 * 14 13 11 16 16 C 1.55161 * 101.48505 * 37.29171 * 15 14 13 17 17 O 1.42896 * 110.71651 * 82.69991 * 16 15 14 18 18 C 1.50706 * 110.87157 * 205.90104 * 16 15 14 19 19 H 1.08000 * 120.00224 * 355.06384 * 18 16 15 20 20 C 1.37873 * 119.99789 * 175.06789 * 18 16 15 21 21 N 1.31513 * 119.99924 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99969 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47444 * 89.99636 * 22 20 18 24 24 H 1.48497 * 109.46990 * 209.99870 * 22 20 18 25 25 H 1.48506 * 109.46909 * 329.99326 * 22 20 18 26 26 C 1.47023 * 125.64519 * 180.02562 * 13 11 9 27 27 H 1.09004 * 109.46633 * 263.40722 * 1 2 3 28 28 H 1.09000 * 109.46703 * 23.40214 * 1 2 3 29 29 H 1.08998 * 109.47162 * 143.40558 * 1 2 3 30 30 H 1.08000 * 119.90204 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.83962 * 179.76485 * 4 3 2 32 32 H 1.08002 * 120.09404 * 180.02562 * 7 5 4 33 33 H 1.09005 * 110.36675 * 274.74627 * 14 13 11 34 34 H 1.09001 * 110.36517 * 37.07022 * 14 13 11 35 35 H 1.09001 * 111.19062 * 279.19129 * 15 14 13 36 36 H 1.09000 * 110.91286 * 155.27642 * 15 14 13 37 37 H 0.96711 * 113.99755 * 185.02441 * 17 16 15 38 38 H 0.97002 * 119.99756 * 180.02562 * 21 20 18 39 39 H 1.09002 * 109.88525 * 300.43905 * 26 13 11 40 40 H 1.08994 * 109.88299 * 61.44894 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1933 0.0000 4 6 3.5816 1.1967 -0.0054 5 6 4.2848 0.0013 0.0000 6 9 5.6358 0.0137 -0.0001 7 6 3.6068 -1.2014 0.0058 8 6 2.2078 -1.2108 0.0059 9 6 1.4759 -2.4901 0.0127 10 8 0.2677 -2.4974 0.1277 11 6 2.2206 -3.7769 -0.1220 12 8 3.4341 -3.7776 -0.1317 13 7 1.5451 -4.9380 -0.2330 14 6 0.0780 -5.0822 -0.2294 15 6 -0.1892 -6.4129 -0.9807 16 6 0.9947 -7.2877 -0.4903 17 8 0.7004 -7.8698 0.7811 18 6 1.3270 -8.3563 -1.4997 19 1 0.7116 -8.4788 -2.3788 20 6 2.4165 -9.1774 -1.3010 21 7 3.1661 -9.0279 -0.2308 22 14 2.8288 -10.5015 -2.5526 23 1 3.7483 -9.9450 -3.5773 24 1 3.4848 -11.6437 -1.8669 25 1 1.5809 -10.9684 -3.2084 26 6 2.1496 -6.2711 -0.3707 27 1 -0.3633 -0.1180 1.0209 28 1 -0.3633 0.9432 -0.4082 29 1 -0.3633 -0.8251 -0.6126 30 1 1.6572 2.1283 0.0004 31 1 4.1167 2.1348 -0.0092 32 1 4.1548 -2.1320 0.0104 33 1 -0.2950 -5.1398 0.7932 34 1 -0.3863 -4.2492 -0.7572 35 1 -0.1487 -6.2706 -2.0606 36 1 -1.1442 -6.8441 -0.6807 37 1 1.4368 -8.3634 1.1676 38 1 3.9329 -9.6054 -0.0912 39 1 2.7689 -6.3066 -1.2670 40 1 2.7553 -6.4960 0.5072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000649029745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:14 Heat of formation + Delta-G solvation = -137.888516 kcal Electronic energy + Delta-G solvation = -27076.914240 eV Core-core repulsion = 22964.265774 eV Total energy + Delta-G solvation = -4112.648466 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.94111 -42.12951 -40.47620 -39.23191 -39.05063 -36.19125 -34.26462 -33.41254 -32.64599 -31.92307 -29.77978 -28.49299 -27.46031 -26.12372 -24.58932 -23.64900 -22.26172 -21.52109 -20.64713 -19.15442 -18.64903 -18.47551 -17.62984 -17.49239 -17.05836 -16.94300 -16.64789 -16.40248 -16.15969 -15.90659 -15.60919 -14.91767 -14.85951 -14.83809 -14.76146 -14.45269 -14.09593 -14.07797 -13.57939 -13.45334 -13.10589 -12.89822 -12.87503 -12.74350 -12.70692 -12.48201 -12.38306 -12.30636 -12.15742 -11.96649 -11.20419 -10.71759 -10.43684 -10.25296 -10.20696 -9.81725 -9.64082 -8.29324 -6.45227 -0.89324 0.07928 0.43966 1.39996 1.42930 1.50508 1.53400 1.82968 2.36129 2.51132 2.78886 2.97592 3.11272 3.47414 3.72158 3.75170 3.88932 3.97096 4.00443 4.11999 4.16746 4.29766 4.54367 4.59180 4.63893 4.70895 4.83388 4.89695 4.92130 4.97901 5.02636 5.05532 5.13521 5.22579 5.28821 5.41677 5.44854 5.70170 5.72792 5.82138 6.02516 6.35464 6.61769 6.75791 7.24004 7.32134 8.76975 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.003377 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.911781 B = 8288.962937 C = 9298.343664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.026 4.026 3 C -0.101 4.101 4 C -0.096 4.096 5 C 0.054 3.946 6 F -0.147 7.147 7 C -0.118 4.118 8 C -0.158 4.158 9 C 0.402 3.598 10 O -0.406 6.406 11 C 0.476 3.524 12 O -0.551 6.551 13 N -0.585 5.585 14 C 0.106 3.894 15 C -0.114 4.114 16 C 0.233 3.767 17 O -0.586 6.586 18 C -0.558 4.558 19 H 0.068 0.932 20 C 0.028 3.972 21 N -0.915 5.915 22 Si 0.963 3.037 23 H -0.278 1.278 24 H -0.282 1.282 25 H -0.265 1.265 26 C 0.116 3.884 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.185 0.815 31 H 0.174 0.826 32 H 0.154 0.846 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.376 0.624 38 H 0.271 0.729 39 H 0.045 0.955 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 21.111 0.107 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.027 4.027 3 C -0.118 4.118 4 C -0.114 4.114 5 C 0.035 3.965 6 F -0.126 7.126 7 C -0.137 4.137 8 C -0.159 4.159 9 C 0.276 3.724 10 O -0.279 6.279 11 C 0.263 3.737 12 O -0.432 6.432 13 N -0.317 5.317 14 C -0.015 4.015 15 C -0.152 4.152 16 C 0.193 3.807 17 O -0.394 6.394 18 C -0.596 4.596 19 H 0.087 0.913 20 C -0.174 4.174 21 N -0.554 5.554 22 Si 0.789 3.211 23 H -0.204 1.204 24 H -0.207 1.207 25 H -0.190 1.190 26 C -0.006 4.006 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.202 0.798 31 H 0.191 0.809 32 H 0.171 0.829 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.230 21.363 0.159 21.994 hybrid contribution 1.946 -1.763 -0.290 2.642 sum -3.284 19.600 -0.132 19.874 Atomic orbital electron populations 1.21152 0.88209 1.04578 1.03839 1.20592 0.98145 0.91034 0.92906 1.21338 0.92668 0.98624 0.99196 1.21869 0.95477 0.97314 0.96755 1.17862 0.77098 0.94991 1.06597 1.91489 1.29358 1.97418 1.94334 1.22452 0.94864 0.99881 0.96457 1.19621 0.93003 0.93044 1.10282 1.22166 0.88278 0.88521 0.73398 1.90493 1.15202 1.88756 1.33438 1.21066 0.87872 0.85604 0.79199 1.90509 1.14577 1.86295 1.51794 1.48997 1.09931 1.06407 1.66410 1.22742 0.78055 0.99143 1.01606 1.22859 0.99042 0.93229 1.00050 1.19719 0.89537 0.89083 0.82353 1.86115 1.43948 1.72627 1.36739 1.21813 1.12603 1.17207 1.07975 0.91342 1.25798 0.95195 0.99109 0.97253 1.69791 1.17669 1.39952 1.28006 0.85466 0.78431 0.78415 0.78815 1.20396 1.20741 1.18964 1.22750 0.98103 0.80378 0.99406 0.89781 0.88400 0.90624 0.79802 0.80871 0.82887 0.90741 0.87612 0.89499 0.88892 0.77472 0.91995 0.93687 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 8.72 71.23 0.62 -1.26 16 2 C -0.03 -0.50 5.92 -19.55 -0.12 -0.62 16 3 C -0.10 -1.34 9.66 22.22 0.21 -1.13 16 4 C -0.10 -1.51 10.02 22.41 0.22 -1.28 16 5 C 0.05 1.31 7.29 22.34 0.16 1.47 16 6 F -0.15 -3.95 17.26 44.97 0.78 -3.17 16 7 C -0.12 -3.48 9.28 22.63 0.21 -3.27 16 8 C -0.16 -4.28 5.88 -20.06 -0.12 -4.40 16 9 C 0.40 12.61 7.07 27.66 0.20 12.80 16 10 O -0.41 -11.82 10.87 -3.29 -0.04 -11.85 16 11 C 0.48 18.86 7.86 87.22 0.69 19.55 16 12 O -0.55 -24.54 13.75 -3.27 -0.04 -24.59 16 13 N -0.58 -24.28 3.32 -813.13 -2.70 -26.99 16 14 C 0.11 3.74 5.98 86.93 0.52 4.26 16 15 C -0.11 -4.41 6.24 32.06 0.20 -4.21 16 16 C 0.23 11.23 0.85 -10.35 -0.01 11.22 16 17 O -0.59 -29.43 13.07 -148.98 -1.95 -31.38 16 18 C -0.56 -28.95 8.13 25.60 0.21 -28.74 16 19 H 0.07 3.45 7.78 -2.91 -0.02 3.43 16 20 C 0.03 1.43 5.28 84.65 0.45 1.88 16 21 N -0.92 -49.19 10.96 21.45 0.24 -48.95 16 22 Si 0.96 41.66 29.54 68.60 2.03 43.69 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 26 C 0.12 5.68 5.23 86.73 0.45 6.13 16 27 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.10 0.87 8.04 -2.39 -0.02 0.85 16 29 H 0.08 1.46 5.89 -2.39 -0.01 1.45 16 30 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 31 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.15 5.50 4.85 -3.38 -0.02 5.48 16 33 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 34 H 0.11 3.20 6.31 -2.39 -0.02 3.19 16 35 H 0.09 3.18 8.04 -2.39 -0.02 3.16 16 36 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.38 19.60 7.45 -74.05 -0.55 19.05 16 38 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 39 H 0.04 2.41 7.81 -2.39 -0.02 2.39 16 40 H 0.04 2.28 7.92 -2.39 -0.02 2.26 16 Total: -1.00 -62.59 336.46 2.76 -59.83 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.55 Total: 31.00 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 3.90 Total: 12.41 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -2.47 Total: -75.94 kcal Atomic # 8 Polarization: -65.79 SS G_CDS: -2.03 Total: -67.82 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.78 Total: -3.17 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -62.59 2.76 -59.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000649029745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.058 kcal (2) G-P(sol) polarization free energy of solvation -62.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds