Wall clock time and date at job start Tue Mar 31 2020 14:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42898 * 109.46525 * 192.86135 * 3 2 1 5 5 C 1.35971 * 116.99879 * 179.97438 * 4 3 2 6 6 C 1.38723 * 119.99012 * 180.02562 * 5 4 3 7 7 C 1.38078 * 120.02473 * 180.02562 * 6 5 4 8 8 C 1.38868 * 119.97682 * 359.97438 * 7 6 5 9 9 N 1.40043 * 120.01366 * 180.02562 * 8 7 6 10 10 C 1.34774 * 119.99847 * 146.87660 * 9 8 7 11 11 O 1.21567 * 120.00404 * 354.82022 * 10 9 8 12 12 C 1.47856 * 119.99963 * 175.10109 * 10 9 8 13 13 C 1.39930 * 120.02645 * 359.71830 * 12 10 9 14 14 C 1.38324 * 120.35500 * 179.76828 * 13 12 10 15 15 C 1.37752 * 120.41692 * 0.51308 * 14 13 12 16 16 C 1.40749 * 120.03998 * 359.74880 * 15 14 13 17 17 C 1.41439 * 120.17643 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00020 * 151.34420 * 17 16 15 19 19 C 1.39933 * 120.00044 * 331.34172 * 17 16 15 20 20 N 1.30830 * 119.99880 * 166.56612 * 19 17 16 21 21 Si 1.86802 * 120.00038 * 346.56788 * 19 17 16 22 22 H 1.48499 * 109.46962 * 95.30682 * 21 19 17 23 23 H 1.48495 * 109.47297 * 215.30587 * 21 19 17 24 24 H 1.48500 * 109.47163 * 335.30981 * 21 19 17 25 25 C 1.39007 * 120.02428 * 180.02562 * 12 10 9 26 26 C 1.38865 * 119.97077 * 0.27212 * 8 7 6 27 27 C 1.38080 * 119.97881 * 359.49625 * 26 8 7 28 28 H 4.38441 * 5.44448 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.47169 * 72.86355 * 3 2 1 30 30 H 1.08992 * 109.47020 * 312.86146 * 3 2 1 31 31 H 1.08005 * 119.98577 * 0.02562 * 6 5 4 32 32 H 1.07992 * 120.01304 * 179.97438 * 7 6 5 33 33 H 0.96998 * 120.00205 * 326.87857 * 9 8 7 34 34 H 1.08007 * 119.81838 * 0.02951 * 13 12 10 35 35 H 1.08004 * 119.78963 * 180.23878 * 14 13 12 36 36 H 1.08001 * 119.97807 * 179.72066 * 15 14 13 37 37 H 0.97002 * 119.99813 * 180.02562 * 20 19 17 38 38 H 1.07997 * 120.20703 * 359.94318 * 25 12 10 39 39 H 1.07998 * 120.00595 * 179.72640 * 26 8 7 40 40 H 1.08000 * 119.99141 * 180.21005 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1216 1.3144 0.2999 5 6 4.4695 1.4886 0.3401 6 6 4.9989 2.7386 0.6260 7 6 6.3675 2.9165 0.6665 8 6 7.2143 1.8435 0.4214 9 7 8.6025 2.0229 0.4628 10 6 9.3989 1.0224 0.8886 11 8 8.9088 -0.0008 1.3251 12 6 10.8687 1.1718 0.8305 13 6 11.4336 2.3494 0.3282 14 6 12.8077 2.4983 0.2752 15 6 13.6361 1.4856 0.7062 16 6 13.0864 0.2917 1.2096 17 6 13.9342 -0.7497 1.6535 18 1 13.5995 -1.4264 2.4258 19 6 15.2067 -0.9033 1.0920 20 7 16.0860 -1.6824 1.6677 21 14 15.6499 0.0041 -0.4796 22 1 16.3479 1.2700 -0.1401 23 1 16.5421 -0.8465 -1.3075 24 1 14.4118 0.3102 -1.2404 25 6 11.6906 0.1401 1.2690 26 6 6.6838 0.5936 0.1302 27 6 5.3148 0.4163 0.0948 28 1 -1.0502 -0.0004 -0.0003 29 1 3.0095 -0.3020 -0.9821 30 1 3.0096 -0.6982 0.7532 31 1 4.3401 3.5730 0.8170 32 1 6.7794 3.8898 0.8887 33 1 8.9909 2.8672 0.1851 34 1 10.7930 3.1480 -0.0161 35 1 13.2339 3.4126 -0.1107 36 1 14.7081 1.6077 0.6575 37 1 16.9683 -1.7886 1.2786 38 1 11.2591 -0.7722 1.6537 39 1 7.3417 -0.2403 -0.0648 40 1 4.9021 -0.5564 -0.1283 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730981097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:31 Heat of formation + Delta-G solvation = 18.485246 kcal Electronic energy + Delta-G solvation = -24313.447931 eV Core-core repulsion = 20638.349565 eV Total energy + Delta-G solvation = -3675.098366 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.115 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78400 -40.81042 -39.37307 -38.32581 -35.76852 -35.42701 -34.30151 -32.61261 -32.10597 -31.82777 -29.96492 -28.31110 -27.09340 -25.23117 -24.02867 -23.02184 -22.44088 -21.51981 -19.92574 -19.32052 -19.30950 -18.49770 -18.02827 -17.49033 -17.05205 -16.80280 -16.47907 -15.99107 -15.84338 -15.48252 -15.43482 -15.02203 -14.59729 -14.50173 -14.30714 -14.10623 -14.06778 -13.85842 -13.46186 -13.26680 -12.95193 -12.84673 -12.65718 -12.33291 -12.19682 -11.68719 -11.59837 -11.57350 -11.35466 -11.20709 -10.97474 -10.76425 -10.01948 -9.66075 -9.63259 -8.91139 -8.73757 -6.58053 -0.02950 0.31904 0.45051 0.73203 1.24878 1.27831 1.42050 1.48842 1.75013 1.88082 2.02907 2.10633 2.61030 2.62481 2.79785 3.42264 3.43655 3.71298 3.83087 3.93977 4.09936 4.23005 4.26767 4.28580 4.36852 4.43910 4.48265 4.57125 4.84761 4.85383 4.89437 4.94099 5.03192 5.12328 5.29773 5.33445 5.40349 5.41893 5.61063 5.67441 5.78380 5.82136 6.07531 6.27246 6.34159 6.46659 6.51930 6.62568 6.71823 7.11225 8.17672 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.030193 B = 0.002185 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.134353 B =12814.379366 C =13379.093720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.248 4.248 3 C 0.165 3.835 4 O -0.322 6.322 5 C 0.105 3.895 6 C -0.129 4.129 7 C -0.095 4.095 8 C 0.099 3.901 9 N -0.652 5.652 10 C 0.564 3.436 11 O -0.564 6.564 12 C -0.113 4.113 13 C -0.180 4.180 14 C -0.081 4.081 15 C -0.223 4.223 16 C 0.064 3.936 17 C -0.484 4.484 18 H 0.049 0.951 19 C 0.039 3.961 20 N -0.853 5.853 21 Si 0.972 3.028 22 H -0.248 1.248 23 H -0.282 1.282 24 H -0.244 1.244 25 C -0.163 4.163 26 C -0.103 4.103 27 C -0.189 4.189 28 H 0.259 0.741 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.427 0.573 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.105 0.895 37 H 0.295 0.705 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.548 11.577 -7.725 26.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.248 4.248 3 C 0.091 3.909 4 O -0.237 6.237 5 C 0.059 3.941 6 C -0.148 4.148 7 C -0.115 4.115 8 C 0.005 3.995 9 N -0.299 5.299 10 C 0.355 3.645 11 O -0.443 6.443 12 C -0.116 4.116 13 C -0.199 4.199 14 C -0.099 4.099 15 C -0.243 4.243 16 C 0.061 3.939 17 C -0.514 4.514 18 H 0.067 0.933 19 C -0.174 4.174 20 N -0.479 5.479 21 Si 0.795 3.205 22 H -0.173 1.173 23 H -0.209 1.209 24 H -0.168 1.168 25 C -0.184 4.184 26 C -0.123 4.123 27 C -0.208 4.208 28 H 0.275 0.725 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.175 0.825 32 H 0.184 0.816 33 H 0.267 0.733 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.743 10.826 -7.332 26.233 hybrid contribution 0.889 -0.682 -0.098 1.124 sum -21.854 10.144 -7.430 25.213 Atomic orbital electron populations 1.25936 0.96742 0.94699 0.98357 1.22725 0.94350 1.04709 1.02988 1.19443 0.85167 0.83332 1.02919 1.86064 1.19214 1.32149 1.86294 1.19048 0.81693 0.94758 0.98563 1.20491 0.94681 0.95685 1.03968 1.20985 0.91751 0.99134 0.99644 1.17925 0.82912 0.95484 1.03147 1.43234 1.04177 1.17765 1.64717 1.18707 0.87303 0.82730 0.75799 1.90711 1.76750 1.30498 1.46374 1.19567 0.90577 0.96955 1.04538 1.21039 0.95251 0.96958 1.06692 1.21038 0.93339 0.98242 0.97282 1.21355 0.99004 0.94751 1.09140 1.17777 0.91994 0.92822 0.91281 1.19499 0.98797 1.13110 1.19946 0.93284 1.26973 0.94340 0.94661 1.01460 1.69699 1.06068 1.33159 1.38961 0.85409 0.79365 0.78185 0.77524 1.17298 1.20930 1.16754 1.21170 0.92941 0.98326 1.05933 1.20982 0.95245 0.97115 0.98995 1.21242 0.92918 0.99586 1.07061 0.72533 0.88204 0.88738 0.82544 0.81636 0.73282 0.82935 0.83249 0.87698 0.89456 0.89150 0.86743 0.83571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 19.25 74.32 1.43 -0.32 16 2 C -0.25 -4.24 13.73 31.13 0.43 -3.81 16 3 C 0.17 2.75 5.21 70.18 0.37 3.11 16 4 O -0.32 -6.82 10.10 -93.23 -0.94 -7.76 16 5 C 0.10 2.27 6.69 22.50 0.15 2.42 16 6 C -0.13 -2.45 9.98 22.35 0.22 -2.23 16 7 C -0.10 -1.82 9.96 22.38 0.22 -1.59 16 8 C 0.10 2.55 6.28 38.13 0.24 2.79 16 9 N -0.65 -17.30 5.29 -305.96 -1.62 -18.92 16 10 C 0.56 20.74 7.51 86.79 0.65 21.39 16 11 O -0.56 -24.85 14.02 -3.93 -0.06 -24.90 16 12 C -0.11 -4.49 5.87 -20.14 -0.12 -4.60 16 13 C -0.18 -5.75 9.54 22.70 0.22 -5.53 16 14 C -0.08 -2.78 10.01 22.18 0.22 -2.56 16 15 C -0.22 -9.70 6.92 22.77 0.16 -9.55 16 16 C 0.06 3.23 5.18 -21.32 -0.11 3.12 16 17 C -0.48 -27.61 9.61 23.47 0.23 -27.38 16 18 H 0.05 3.08 8.06 -2.91 -0.02 3.05 16 19 C 0.04 2.11 5.46 85.25 0.47 2.58 16 20 N -0.85 -47.03 13.93 21.82 0.30 -46.73 16 21 Si 0.97 41.13 24.37 68.60 1.67 42.80 16 22 H -0.25 -9.52 6.76 99.48 0.67 -8.84 16 23 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.24 -10.31 6.49 99.48 0.65 -9.66 16 25 C -0.16 -7.93 9.34 23.01 0.21 -7.72 16 26 C -0.10 -2.93 8.65 22.38 0.19 -2.74 16 27 C -0.19 -4.39 9.03 22.35 0.20 -4.19 16 28 H 0.26 0.86 7.80 -4.41 -0.03 0.83 16 29 H 0.10 1.34 7.66 -2.39 -0.02 1.32 16 30 H 0.09 1.38 7.66 -2.39 -0.02 1.36 16 31 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.43 8.04 6.85 -92.71 -0.63 7.40 16 34 H 0.15 3.22 6.39 -2.91 -0.02 3.20 16 35 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 36 H 0.11 4.48 4.20 -2.91 -0.01 4.46 16 37 H 0.29 14.51 8.30 -92.71 -0.77 13.74 16 38 H 0.09 4.73 7.64 -2.91 -0.02 4.71 16 39 H 0.11 3.84 6.41 -2.91 -0.02 3.82 16 40 H 0.15 2.73 6.29 -2.91 -0.02 2.71 16 Total: -1.00 -72.02 347.72 5.11 -66.91 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.37 Total: 25.39 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 5.38 Total: -36.80 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -1.31 Total: -65.65 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.00 Total: -32.66 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.67 Total: 42.80 kcal Total: -72.02 5.11 -66.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730981097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.395 kcal (2) G-P(sol) polarization free energy of solvation -72.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds