Wall clock time and date at job start Tue Mar 31 2020 13:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47295 * 2 1 4 4 C 1.53009 * 109.47056 * 119.99949 * 2 1 3 5 5 N 1.46902 * 109.46964 * 178.39315 * 4 2 1 6 6 C 1.46910 * 110.99766 * 286.30639 * 5 4 2 7 7 C 1.50706 * 109.46815 * 75.92745 * 6 5 4 8 8 H 1.07996 * 120.00153 * 5.27021 * 7 6 5 9 9 C 1.37878 * 119.99672 * 185.27122 * 7 6 5 10 10 N 1.31511 * 119.99837 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00012 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47121 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47301 * 119.99361 * 11 9 7 14 14 H 1.48499 * 109.47063 * 239.99678 * 11 9 7 15 15 C 1.46898 * 111.00044 * 162.35721 * 5 4 2 16 16 C 1.50707 * 109.46899 * 287.15097 * 15 5 4 17 17 C 1.33388 * 125.20078 * 94.90214 * 16 15 5 18 18 C 1.38421 * 114.91792 * 180.02562 * 17 16 15 19 19 C 1.33390 * 114.92004 * 0.02562 * 18 17 16 20 20 C 1.50706 * 125.20055 * 179.97438 * 19 18 17 21 21 F 1.39899 * 109.47386 * 89.99859 * 20 19 18 22 22 F 1.39898 * 109.47361 * 329.99753 * 20 19 18 23 23 F 1.39907 * 109.46761 * 209.99803 * 20 19 18 24 24 S 1.75881 * 125.19955 * 275.22991 * 16 15 5 25 25 H 1.09000 * 109.46466 * 300.00036 * 1 2 3 26 26 H 1.08998 * 109.46805 * 60.00061 * 1 2 3 27 27 H 1.08995 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47068 * 239.99603 * 2 1 3 29 29 H 1.09000 * 109.46913 * 184.03617 * 3 2 1 30 30 H 1.09005 * 109.46616 * 304.03073 * 3 2 1 31 31 H 1.08997 * 109.47070 * 64.03128 * 3 2 1 32 32 H 1.08995 * 109.47152 * 58.39332 * 4 2 1 33 33 H 1.08998 * 109.47012 * 298.38767 * 4 2 1 34 34 H 1.09000 * 109.46876 * 195.92320 * 6 5 4 35 35 H 1.08992 * 109.46981 * 315.93077 * 6 5 4 36 36 H 0.97006 * 120.00182 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.47259 * 167.15236 * 15 5 4 38 38 H 1.08997 * 109.47208 * 47.14988 * 15 5 4 39 39 H 1.07998 * 122.53884 * 0.06519 * 17 16 15 40 40 H 1.08002 * 122.54187 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5085 -0.7550 1.2300 6 6 3.9999 -1.7234 0.2406 7 6 3.8524 -1.1459 -1.1436 8 1 3.5156 -0.1277 -1.2709 9 6 4.1474 -1.9176 -2.2475 10 7 4.5580 -3.1573 -2.0924 11 14 3.9653 -1.2017 -3.9632 12 1 3.4917 0.2024 -3.8660 13 1 5.2787 -1.2346 -4.6554 14 1 2.9801 -2.0038 -4.7322 15 6 4.0460 -1.0481 2.5654 16 6 3.8741 0.1583 3.4520 17 6 2.8528 0.3605 4.2859 18 6 2.9088 1.5448 5.0003 19 6 3.9753 2.3046 4.7460 20 6 4.2670 3.6356 5.3899 21 9 5.0218 3.4366 6.5509 22 9 3.0635 4.2684 5.7189 23 9 4.9868 4.4375 4.4975 24 16 4.9852 1.5189 3.5393 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1277 1.4433 -0.0723 30 1 1.6189 1.9767 -0.8517 31 1 1.7369 1.9350 0.9239 32 1 1.6534 -1.7402 1.2639 33 1 1.7005 -0.1910 2.1390 34 1 5.0507 -1.9391 0.4342 35 1 3.4204 -2.6436 0.3140 36 1 4.7660 -3.7001 -2.8690 37 1 5.1053 -1.2921 2.4852 38 1 3.5098 -1.8942 2.9952 39 1 2.0440 -0.3466 4.3959 40 1 2.1468 1.8319 5.7097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762946537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:21 Heat of formation + Delta-G solvation = -119.966702 kcal Electronic energy + Delta-G solvation = -25351.643965 eV Core-core repulsion = 21264.129083 eV Total energy + Delta-G solvation = -4087.514882 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.107 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.24491 -47.77500 -47.73652 -38.56374 -37.16164 -33.94129 -32.78311 -31.03809 -28.04795 -26.84975 -26.45939 -25.15701 -23.56015 -22.69082 -20.93914 -19.89925 -19.10350 -18.76029 -18.60598 -17.58753 -16.52697 -16.09585 -15.28387 -14.86514 -14.65566 -14.59476 -14.55388 -14.19823 -14.17568 -13.90895 -13.89903 -13.73172 -13.36436 -12.98335 -12.66018 -12.45238 -12.36005 -12.26455 -12.06335 -11.76177 -11.44492 -11.27063 -11.09034 -10.82012 -10.68133 -10.56673 -10.21922 -10.17416 -10.01344 -9.47968 -9.09851 -8.90245 -8.50173 -8.43215 -7.41322 -6.08319 -4.06641 0.65046 1.31533 1.87694 2.52298 2.59777 3.27267 3.36020 3.40155 3.64105 4.09704 4.26890 4.37105 4.73313 4.98370 5.21541 5.26223 5.31413 5.55547 5.62490 5.70567 5.85288 5.93187 5.96549 6.07326 6.08562 6.25013 6.25443 6.33586 6.44032 6.53382 6.67099 6.78025 7.09238 7.16504 7.23285 7.42586 7.78548 8.00183 8.07553 8.43586 8.99946 9.54991 11.02087 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.003524 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.213330 B = 7942.778726 C = 8139.112913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C -0.127 4.127 4 C 0.075 3.925 5 N -0.529 5.529 6 C 0.192 3.808 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.891 3.109 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.111 3.889 16 C -0.108 4.108 17 C -0.165 4.165 18 C -0.050 4.050 19 C -0.336 4.336 20 C 0.546 3.454 21 F -0.176 7.176 22 F -0.174 7.174 23 F -0.175 7.175 24 S 0.210 5.790 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.023 0.977 33 H 0.052 0.948 34 H 0.024 0.976 35 H 0.000 1.000 36 H 0.260 0.740 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.146 0.854 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 8.873 14.305 17.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 C -0.185 4.185 4 C -0.053 4.053 5 N -0.253 5.253 6 C 0.067 3.933 7 C -0.543 4.543 8 H 0.098 0.902 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.718 3.282 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.211 1.211 15 C -0.019 4.019 16 C -0.228 4.228 17 C -0.195 4.195 18 C -0.084 4.084 19 C -0.455 4.455 20 C 0.490 3.510 21 F -0.157 7.157 22 F -0.155 7.155 23 F -0.156 7.156 24 S 0.477 5.523 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.137 0.863 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.018 0.982 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.163 0.837 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.527 9.583 13.338 16.495 hybrid contribution -1.742 -0.682 0.120 1.875 sum -3.269 8.901 13.459 16.464 Atomic orbital electron populations 1.21831 0.97228 1.00643 1.00405 1.21576 0.92882 0.97045 1.01467 1.21626 1.02625 0.95424 0.98785 1.22007 0.87859 0.97821 0.97607 1.62142 1.07726 1.52860 1.02598 1.19854 0.94996 0.88686 0.89730 1.21403 1.43674 0.99679 0.89540 0.90185 1.24992 0.95516 0.94844 0.99261 1.69962 1.45829 1.07777 1.30177 0.86545 0.77742 0.79427 0.84442 1.19413 1.21067 1.21149 1.20672 1.01478 0.89932 0.89844 1.25095 0.97668 1.00181 0.99878 1.20025 1.00659 0.98861 0.99910 1.19959 0.96275 0.93213 0.98990 1.24566 1.07227 1.01431 1.12230 1.17236 0.74145 0.83597 0.76053 1.93221 1.76755 1.95143 1.50594 1.93193 1.45771 1.83707 1.92846 1.93221 1.78526 1.75802 1.68048 1.84491 1.22805 1.11222 1.33777 0.94080 0.93318 0.93456 0.86259 0.91055 0.94671 0.94850 0.95830 0.92954 0.95750 0.98232 0.93004 0.89656 0.93127 0.83675 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.19 37.16 0.34 -1.86 16 2 C -0.11 -2.03 2.40 -90.61 -0.22 -2.25 16 3 C -0.13 -2.24 8.45 37.16 0.31 -1.93 16 4 C 0.08 1.34 4.24 -3.82 -0.02 1.32 16 5 N -0.53 -10.09 3.78 -237.50 -0.90 -10.99 16 6 C 0.19 4.53 4.76 -4.97 -0.02 4.50 16 7 C -0.50 -12.88 6.92 -34.44 -0.24 -13.12 16 8 H 0.08 2.01 4.67 -52.49 -0.25 1.76 16 9 C 0.06 1.47 5.46 -17.82 -0.10 1.38 16 10 N -0.90 -25.36 13.29 55.43 0.74 -24.62 16 11 Si 0.89 20.73 29.54 -169.99 -5.02 15.70 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 15 C 0.11 1.76 5.47 -4.97 -0.03 1.73 16 16 C -0.11 -1.52 5.55 -36.00 -0.20 -1.72 16 17 C -0.16 -2.03 8.77 -41.21 -0.36 -2.39 16 18 C -0.05 -0.58 9.70 -41.21 -0.40 -0.98 16 19 C -0.34 -4.26 5.95 -36.00 -0.21 -4.48 16 20 C 0.55 6.68 3.52 36.01 0.13 6.81 16 21 F -0.18 -2.13 17.30 2.25 0.04 -2.09 16 22 F -0.17 -2.08 16.93 2.25 0.04 -2.04 16 23 F -0.17 -2.26 17.05 2.25 0.04 -2.22 16 24 S 0.21 2.86 23.03 -107.50 -2.48 0.39 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.12 2.59 4.80 -51.93 -0.25 2.34 16 29 H 0.07 1.40 6.85 -51.93 -0.36 1.04 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.44 7.78 -51.93 -0.40 0.03 16 33 H 0.05 0.83 6.11 -51.93 -0.32 0.52 16 34 H 0.02 0.61 7.63 -51.93 -0.40 0.22 16 35 H 0.00 0.00 7.76 -51.93 -0.40 -0.41 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.09 1.36 7.66 -51.93 -0.40 0.96 16 38 H 0.05 0.76 8.03 -51.93 -0.42 0.34 16 39 H 0.15 1.56 7.97 -52.49 -0.42 1.14 16 40 H 0.14 1.35 7.99 -52.49 -0.42 0.94 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -26.71 348.91 -8.57 -35.28 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.27 Total: -1.68 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -1.01 Total: -12.98 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.16 Total: -35.62 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.12 Total: -6.35 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.48 Total: 0.39 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.71 -8.57 -35.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762946537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.689 kcal (2) G-P(sol) polarization free energy of solvation -26.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds