Wall clock time and date at job start Tue Mar 31 2020 13:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47295 * 2 1 4 4 C 1.53009 * 109.47056 * 119.99949 * 2 1 3 5 5 N 1.46902 * 109.46964 * 178.39315 * 4 2 1 6 6 C 1.46910 * 110.99766 * 286.30639 * 5 4 2 7 7 C 1.50706 * 109.46815 * 75.92745 * 6 5 4 8 8 H 1.07996 * 120.00153 * 5.27021 * 7 6 5 9 9 C 1.37878 * 119.99672 * 185.27122 * 7 6 5 10 10 N 1.31511 * 119.99837 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00012 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47121 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47301 * 119.99361 * 11 9 7 14 14 H 1.48499 * 109.47063 * 239.99678 * 11 9 7 15 15 C 1.46898 * 111.00044 * 162.35721 * 5 4 2 16 16 C 1.50707 * 109.46899 * 287.15097 * 15 5 4 17 17 C 1.33388 * 125.20078 * 94.90214 * 16 15 5 18 18 C 1.38421 * 114.91792 * 180.02562 * 17 16 15 19 19 C 1.33390 * 114.92004 * 0.02562 * 18 17 16 20 20 C 1.50706 * 125.20055 * 179.97438 * 19 18 17 21 21 F 1.39899 * 109.47386 * 89.99859 * 20 19 18 22 22 F 1.39898 * 109.47361 * 329.99753 * 20 19 18 23 23 F 1.39907 * 109.46761 * 209.99803 * 20 19 18 24 24 S 1.75881 * 125.19955 * 275.22991 * 16 15 5 25 25 H 1.09000 * 109.46466 * 300.00036 * 1 2 3 26 26 H 1.08998 * 109.46805 * 60.00061 * 1 2 3 27 27 H 1.08995 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47068 * 239.99603 * 2 1 3 29 29 H 1.09000 * 109.46913 * 184.03617 * 3 2 1 30 30 H 1.09005 * 109.46616 * 304.03073 * 3 2 1 31 31 H 1.08997 * 109.47070 * 64.03128 * 3 2 1 32 32 H 1.08995 * 109.47152 * 58.39332 * 4 2 1 33 33 H 1.08998 * 109.47012 * 298.38767 * 4 2 1 34 34 H 1.09000 * 109.46876 * 195.92320 * 6 5 4 35 35 H 1.08992 * 109.46981 * 315.93077 * 6 5 4 36 36 H 0.97006 * 120.00182 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.47259 * 167.15236 * 15 5 4 38 38 H 1.08997 * 109.47208 * 47.14988 * 15 5 4 39 39 H 1.07998 * 122.53884 * 0.06519 * 17 16 15 40 40 H 1.08002 * 122.54187 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5085 -0.7550 1.2300 6 6 3.9999 -1.7234 0.2406 7 6 3.8524 -1.1459 -1.1436 8 1 3.5156 -0.1277 -1.2709 9 6 4.1474 -1.9176 -2.2475 10 7 4.5580 -3.1573 -2.0924 11 14 3.9653 -1.2017 -3.9632 12 1 3.4917 0.2024 -3.8660 13 1 5.2787 -1.2346 -4.6554 14 1 2.9801 -2.0038 -4.7322 15 6 4.0460 -1.0481 2.5654 16 6 3.8741 0.1583 3.4520 17 6 2.8528 0.3605 4.2859 18 6 2.9088 1.5448 5.0003 19 6 3.9753 2.3046 4.7460 20 6 4.2670 3.6356 5.3899 21 9 5.0218 3.4366 6.5509 22 9 3.0635 4.2684 5.7189 23 9 4.9868 4.4375 4.4975 24 16 4.9852 1.5189 3.5393 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1277 1.4433 -0.0723 30 1 1.6189 1.9767 -0.8517 31 1 1.7369 1.9350 0.9239 32 1 1.6534 -1.7402 1.2639 33 1 1.7005 -0.1910 2.1390 34 1 5.0507 -1.9391 0.4342 35 1 3.4204 -2.6436 0.3140 36 1 4.7660 -3.7001 -2.8690 37 1 5.1053 -1.2921 2.4852 38 1 3.5098 -1.8942 2.9952 39 1 2.0440 -0.3466 4.3959 40 1 2.1468 1.8319 5.7097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762946537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:21 Heat of formation + Delta-G solvation = -132.362462 kcal Electronic energy + Delta-G solvation = -25352.181485 eV Core-core repulsion = 21264.129083 eV Total energy + Delta-G solvation = -4088.052403 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.20932 -48.74474 -48.69572 -39.79948 -38.44983 -35.33067 -34.70927 -32.29002 -29.54629 -28.34803 -27.78882 -26.47802 -24.92879 -23.92097 -22.49242 -20.95575 -20.49841 -19.80106 -19.56668 -18.73428 -18.25209 -17.23778 -16.84882 -16.40881 -15.90225 -15.73869 -15.58560 -15.55011 -15.14848 -15.11177 -14.88272 -14.86221 -14.74498 -14.18968 -14.03194 -13.87871 -13.80775 -13.44837 -13.32862 -13.10536 -12.91689 -12.77853 -12.65697 -12.41663 -12.29247 -11.86731 -11.82755 -11.60678 -11.43011 -11.25403 -10.86483 -10.46015 -9.96989 -9.53783 -9.00100 -8.12789 -6.15896 -0.36871 0.28738 0.85770 1.41203 1.44332 1.53821 1.56090 1.62536 2.44146 2.67115 3.13519 3.19953 3.30721 3.33534 3.78121 4.12403 4.19945 4.32862 4.36102 4.50951 4.55904 4.65135 4.77107 4.85508 4.90601 4.95219 5.07664 5.09592 5.16886 5.17795 5.26244 5.34224 5.34882 5.48168 5.66510 5.83762 5.91027 6.15289 6.40278 6.64057 6.98103 7.49273 8.97813 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.003524 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.213330 B = 7942.778726 C = 8139.112913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 C -0.118 4.118 4 C 0.079 3.921 5 N -0.532 5.532 6 C 0.208 3.792 7 C -0.501 4.501 8 H 0.084 0.916 9 C 0.003 3.997 10 N -0.937 5.937 11 Si 0.950 3.050 12 H -0.261 1.261 13 H -0.285 1.285 14 H -0.283 1.283 15 C 0.113 3.887 16 C -0.126 4.126 17 C -0.149 4.149 18 C -0.043 4.043 19 C -0.335 4.335 20 C 0.549 3.451 21 F -0.175 7.175 22 F -0.169 7.169 23 F -0.180 7.180 24 S 0.181 5.819 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.012 0.988 33 H 0.079 0.921 34 H 0.001 0.999 35 H -0.029 1.029 36 H 0.260 0.740 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.167 0.833 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.959 10.483 15.529 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 C -0.176 4.176 4 C -0.049 4.049 5 N -0.256 5.256 6 C 0.082 3.918 7 C -0.539 4.539 8 H 0.102 0.898 9 C -0.195 4.195 10 N -0.578 5.578 11 Si 0.776 3.224 12 H -0.185 1.185 13 H -0.211 1.211 14 H -0.210 1.210 15 C -0.017 4.017 16 C -0.245 4.245 17 C -0.179 4.179 18 C -0.077 4.077 19 C -0.454 4.454 20 C 0.493 3.507 21 F -0.156 7.156 22 F -0.151 7.151 23 F -0.162 7.162 24 S 0.448 5.552 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.097 0.903 34 H 0.019 0.981 35 H -0.011 1.011 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.184 0.816 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.325 11.217 14.576 18.691 hybrid contribution -1.203 -1.143 -0.139 1.665 sum -4.528 10.074 14.437 18.178 Atomic orbital electron populations 1.21751 0.94731 1.01114 1.01824 1.21486 0.95060 0.96931 0.99792 1.21513 1.00874 0.95202 0.99969 1.22032 0.86732 0.97516 0.98642 1.62029 1.08810 1.51093 1.03640 1.19482 0.93212 0.88439 0.90689 1.21731 1.42057 0.99684 0.90472 0.89836 1.25748 0.95661 0.95157 1.02891 1.70083 1.47640 1.09122 1.31004 0.85607 0.77483 0.79061 0.80233 1.18470 1.21127 1.20959 1.20605 1.00969 0.91561 0.88553 1.24805 0.98935 0.99763 1.01034 1.20294 1.00111 0.99110 0.98373 1.20256 0.96299 0.92354 0.98762 1.24649 1.07237 1.01650 1.11842 1.17157 0.74197 0.83368 0.75942 1.93226 1.76774 1.95122 1.50496 1.93203 1.45455 1.83608 1.92791 1.93213 1.78705 1.75954 1.68296 1.84617 1.23743 1.11898 1.34921 0.91898 0.92645 0.93514 0.90192 0.93603 0.93900 0.93201 0.96960 0.90255 0.98103 1.01135 0.93146 0.90576 0.91999 0.81552 0.80884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.19 71.98 0.66 -3.19 16 2 C -0.11 -4.01 2.40 -10.79 -0.03 -4.04 16 3 C -0.12 -3.96 8.45 71.98 0.61 -3.35 16 4 C 0.08 2.70 4.24 86.31 0.37 3.07 16 5 N -0.53 -20.36 3.78 -905.31 -3.42 -23.79 16 6 C 0.21 10.16 4.76 85.56 0.41 10.57 16 7 C -0.50 -26.19 6.92 25.60 0.18 -26.02 16 8 H 0.08 4.25 4.67 -2.91 -0.01 4.23 16 9 C 0.00 0.15 5.46 84.66 0.46 0.61 16 10 N -0.94 -54.56 13.29 21.45 0.28 -54.27 16 11 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 12 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 13 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 15 C 0.11 3.54 5.47 85.56 0.47 4.01 16 16 C -0.13 -3.32 5.55 24.59 0.14 -3.18 16 17 C -0.15 -3.16 8.77 21.22 0.19 -2.97 16 18 C -0.04 -0.84 9.70 21.22 0.21 -0.64 16 19 C -0.34 -7.68 5.95 24.59 0.15 -7.54 16 20 C 0.55 12.24 3.52 71.24 0.25 12.49 16 21 F -0.17 -3.89 17.30 44.97 0.78 -3.11 16 22 F -0.17 -3.56 16.93 44.97 0.76 -2.80 16 23 F -0.18 -4.40 17.05 44.97 0.77 -3.63 16 24 S 0.18 4.77 23.03 -56.49 -1.30 3.47 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 3.49 4.80 -2.38 -0.01 3.47 16 29 H 0.04 1.76 6.85 -2.39 -0.02 1.74 16 30 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.01 0.45 7.78 -2.39 -0.02 0.43 16 33 H 0.08 2.29 6.11 -2.39 -0.01 2.28 16 34 H 0.00 0.05 7.63 -2.39 -0.02 0.03 16 35 H -0.03 -1.57 7.76 -2.39 -0.02 -1.59 16 36 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 37 H 0.08 2.49 7.66 -2.38 -0.02 2.48 16 38 H 0.06 1.80 8.03 -2.39 -0.02 1.78 16 39 H 0.17 2.84 7.97 -2.91 -0.02 2.82 16 40 H 0.17 2.41 7.99 -2.91 -0.02 2.38 16 Total: -1.00 -58.26 348.91 5.00 -53.26 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.06 Total: 5.91 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.05 Total: -20.18 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -3.14 Total: -78.06 kcal Atomic # 9 Polarization: -11.85 SS G_CDS: 2.31 Total: -9.54 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.30 Total: 3.47 kcal Total: -58.26 5.00 -53.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762946537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.107 kcal (2) G-P(sol) polarization free energy of solvation -58.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds