Wall clock time and date at job start Tue Mar 31 2020 13:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 5 5 N 1.46500 * 109.47042 * 130.26045 * 3 2 1 6 6 S 1.65602 * 119.99912 * 265.00397 * 5 3 2 7 7 O 1.42103 * 104.27577 * 181.07198 * 6 5 3 8 8 O 1.42102 * 104.27350 * 308.92310 * 6 5 3 9 9 C 1.81393 * 104.45198 * 64.99812 * 6 5 3 10 10 C 1.52996 * 109.47187 * 180.02562 * 9 6 5 11 11 C 1.53003 * 109.47022 * 300.00081 * 10 9 6 12 12 C 1.53002 * 109.47297 * 59.99487 * 10 9 6 13 13 C 1.50696 * 109.47503 * 179.97438 * 10 9 6 14 14 H 1.07997 * 120.00069 * 0.02562 * 13 10 9 15 15 C 1.37883 * 120.00150 * 179.97438 * 13 10 9 16 16 N 1.31512 * 119.99814 * 359.97438 * 15 13 10 17 17 Si 1.86806 * 119.99750 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47356 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47041 * 120.00260 * 17 15 13 20 20 H 1.48498 * 109.46831 * 240.00054 * 17 15 13 21 21 C 1.50701 * 109.47095 * 250.26086 * 3 2 1 22 22 C 1.38240 * 119.99637 * 279.72740 * 21 3 2 23 23 C 1.38235 * 119.99714 * 179.78957 * 22 21 3 24 24 C 1.38241 * 119.99670 * 0.44227 * 23 22 21 25 25 C 1.38230 * 120.00217 * 359.81044 * 24 23 22 26 26 C 1.38227 * 120.00139 * 100.00169 * 21 3 2 27 27 H 4.18736 * 15.03981 * 359.97438 * 4 2 1 28 28 H 0.96997 * 120.00199 * 84.99299 * 5 3 2 29 29 H 1.08999 * 109.47190 * 299.99774 * 9 6 5 30 30 H 1.09002 * 109.47377 * 60.00151 * 9 6 5 31 31 H 1.08996 * 109.47665 * 59.99953 * 11 10 9 32 32 H 1.09004 * 109.47618 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.46920 * 299.99690 * 11 10 9 34 34 H 1.08999 * 109.46947 * 60.00529 * 12 10 9 35 35 H 1.08998 * 109.47086 * 179.97438 * 12 10 9 36 36 H 1.08997 * 109.47499 * 300.00400 * 12 10 9 37 37 H 0.97000 * 119.99374 * 179.97438 * 16 15 13 38 38 H 1.08002 * 119.99947 * 359.97438 * 22 21 3 39 39 H 1.07994 * 120.00389 * 180.27360 * 23 22 21 40 40 H 1.07998 * 119.99863 * 179.83856 * 24 23 22 41 41 H 1.08005 * 119.99886 * 180.02562 * 25 24 23 42 42 H 1.08005 * 119.99940 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0104 -0.1831 5 7 3.1339 0.8935 -1.0540 6 16 3.5279 0.2810 -2.5413 7 8 3.9759 1.4106 -3.2780 8 8 4.4038 -0.8005 -2.2540 9 6 1.9568 -0.3323 -3.2090 10 6 2.1916 -0.9305 -4.5975 11 6 2.7558 0.1453 -5.5276 12 6 3.1875 -2.0873 -4.4927 13 6 0.8865 -1.4406 -5.1520 14 1 -0.0199 -1.3470 -4.5723 15 6 0.8494 -2.0258 -6.3999 16 7 1.9529 -2.1384 -7.1065 17 14 -0.7686 -2.6574 -7.0875 18 1 -1.8538 -2.4125 -6.1039 19 1 -1.0787 -1.9476 -8.3545 20 1 -0.6593 -4.1148 -7.3506 21 6 3.1481 0.4808 1.3373 22 6 3.1871 1.8343 1.6156 23 6 3.6436 2.2745 2.8439 24 6 4.0696 1.3616 3.7905 25 6 4.0355 0.0084 3.5103 26 6 3.5749 -0.4320 2.2836 27 1 -1.0500 -0.0011 0.0003 28 1 3.2260 1.8434 -0.8808 29 1 1.5551 -1.0990 -2.5467 30 1 1.2472 0.4918 -3.2834 31 1 3.6999 0.5139 -5.1265 32 1 2.9235 -0.2809 -6.5167 33 1 2.0463 0.9695 -5.6023 34 1 2.7856 -2.8538 -3.8301 35 1 3.3544 -2.5138 -5.4817 36 1 4.1316 -1.7188 -4.0914 37 1 1.9267 -2.5504 -7.9842 38 1 2.8582 2.5477 0.8744 39 1 3.6700 3.3316 3.0630 40 1 4.4287 1.7056 4.7492 41 1 4.3679 -0.7048 4.2501 42 1 3.5481 -1.4893 2.0647 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827906129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:07 Heat of formation + Delta-G solvation = 9.529553 kcal Electronic energy + Delta-G solvation = -25128.288962 eV Core-core repulsion = 21588.246200 eV Total energy + Delta-G solvation = -3540.042763 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.72218 -36.69907 -36.28321 -36.21471 -35.33460 -32.26517 -31.64624 -31.23868 -30.87100 -26.64684 -26.27411 -25.71841 -25.22298 -22.84706 -21.86536 -19.66897 -18.87333 -18.57783 -17.76623 -17.03849 -16.03792 -15.95057 -15.44520 -15.31342 -15.05555 -14.74196 -14.66315 -14.15687 -13.60752 -13.43759 -13.16143 -12.98399 -12.74712 -12.51507 -12.11472 -11.91713 -11.68471 -11.48077 -11.28288 -11.13718 -11.08969 -10.94431 -10.71377 -10.57439 -10.39180 -10.32416 -10.26984 -10.15582 -9.86473 -9.65501 -9.39732 -9.12318 -9.01357 -8.68036 -8.40717 -6.03746 -4.15420 0.77492 1.10865 1.19950 2.56122 2.75688 3.24582 3.33060 3.34703 3.35873 3.56406 4.18475 4.34566 4.39880 4.51845 4.65067 4.74208 4.81955 4.91449 5.06380 5.21709 5.25693 5.30913 5.57691 5.67979 5.72084 5.80438 5.85945 5.88513 6.23150 6.29315 6.38001 6.38757 6.70489 6.75727 6.79373 6.89775 6.95864 7.05647 7.31395 7.50193 7.53710 7.67983 7.97896 8.09623 8.32909 8.83329 9.49936 10.97683 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.022591 B = 0.003563 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.151614 B = 7856.604777 C = 8385.117589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.213 4.213 3 C 0.304 3.696 4 H 0.122 0.878 5 N -1.119 6.119 6 S 2.589 3.411 7 O -0.961 6.961 8 O -0.961 6.961 9 C -0.576 4.576 10 C 0.082 3.918 11 C -0.164 4.164 12 C -0.164 4.164 13 C -0.500 4.500 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.883 5.883 17 Si 0.895 3.105 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.080 4.080 22 C -0.104 4.104 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.103 4.103 27 H 0.220 0.780 28 H 0.413 0.587 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.027 0.973 32 H 0.096 0.904 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.095 0.905 36 H 0.028 0.972 37 H 0.262 0.738 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 5.906 19.282 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.215 4.215 3 C 0.197 3.803 4 H 0.140 0.860 5 N -0.873 5.873 6 S 2.687 3.313 7 O -0.951 6.951 8 O -0.951 6.951 9 C -0.710 4.710 10 C 0.080 3.920 11 C -0.222 4.222 12 C -0.222 4.222 13 C -0.539 4.539 14 H 0.078 0.922 15 C -0.138 4.138 16 N -0.522 5.522 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.081 4.081 22 C -0.122 4.122 23 C -0.138 4.138 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.122 4.122 27 H 0.237 0.763 28 H 0.247 0.753 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.046 0.954 32 H 0.114 0.886 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.114 0.886 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.719 5.663 18.703 19.617 hybrid contribution -1.851 0.017 -0.238 1.866 sum -0.132 5.681 18.465 19.320 Atomic orbital electron populations 1.24988 0.95818 0.98948 0.98274 1.23268 0.94322 1.01815 1.02089 1.16279 0.83281 0.95103 0.85679 0.86021 1.56113 1.83508 1.18452 1.29249 1.05840 0.78522 0.74663 0.72248 1.93561 1.80650 1.51182 1.69710 1.93547 1.62565 1.56011 1.82934 1.30512 1.18435 1.11029 1.11063 1.17942 0.96937 0.92263 0.84880 1.22279 0.97533 0.97699 1.04655 1.22278 0.96267 0.99457 1.04157 1.20975 0.92659 1.38738 1.01567 0.92243 1.24940 0.96460 0.95619 0.96740 1.69812 1.26269 1.44005 1.12086 0.86484 0.83672 0.78562 0.78952 1.19847 1.20967 1.20953 1.19666 0.99816 0.94114 0.94552 1.20955 0.99221 0.94993 0.97080 1.21129 0.99250 0.99775 0.93595 1.21193 0.99743 0.93408 0.99377 1.21137 0.99811 0.95901 0.96798 1.21080 0.98051 0.99736 0.93339 0.76284 0.75257 0.86408 0.86228 0.95432 0.88589 0.94460 0.94465 0.88617 0.95335 0.92806 0.85907 0.85845 0.86023 0.85721 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 19.25 29.55 0.57 -1.32 16 2 C -0.21 -2.77 12.07 -37.12 -0.45 -3.21 16 3 C 0.30 4.00 2.85 -71.87 -0.20 3.80 16 4 H 0.12 1.60 7.34 -51.93 -0.38 1.22 16 5 N -1.12 -15.96 5.27 -8.31 -0.04 -16.01 16 6 S 2.59 48.49 4.47 -107.50 -0.48 48.01 16 7 O -0.96 -20.28 15.70 -57.54 -0.90 -21.18 16 8 O -0.96 -20.07 15.01 -57.54 -0.86 -20.93 16 9 C -0.58 -11.40 4.63 37.16 0.17 -11.22 16 10 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 11 C -0.16 -4.06 7.78 37.16 0.29 -3.77 16 12 C -0.16 -4.03 7.77 37.16 0.29 -3.74 16 13 C -0.50 -13.11 8.01 -34.44 -0.28 -13.39 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 16 N -0.88 -24.09 9.35 55.43 0.52 -23.58 16 17 Si 0.90 20.61 29.54 -169.99 -5.02 15.58 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.08 -0.94 4.92 -104.62 -0.51 -1.45 16 22 C -0.10 -1.10 9.15 -39.58 -0.36 -1.47 16 23 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 24 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 25 C -0.12 -1.07 10.05 -39.59 -0.40 -1.46 16 26 C -0.10 -1.09 9.67 -39.59 -0.38 -1.47 16 27 H 0.22 1.82 7.80 -54.09 -0.42 1.39 16 28 H 0.41 5.02 7.03 -34.47 -0.24 4.78 16 29 H 0.12 2.15 7.73 -51.92 -0.40 1.75 16 30 H 0.12 2.19 8.14 -51.92 -0.42 1.76 16 31 H 0.03 0.65 5.47 -51.93 -0.28 0.36 16 32 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 36 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 37 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 38 H 0.12 1.16 6.80 -52.49 -0.36 0.80 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.13 1.16 8.04 -52.48 -0.42 0.74 16 LS Contribution 355.03 15.07 5.35 5.35 Total: -1.00 -32.42 355.03 -9.18 -41.60 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.50 Total: 9.23 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: -2.23 Total: -38.09 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.47 Total: -39.58 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -1.77 Total: -42.11 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 48.49 SS G_CDS: -0.48 Total: 48.01 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.42 -9.18 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827906129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.128 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds