Wall clock time and date at job start Tue Mar 31 2020 13:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 5 5 N 1.46500 * 109.47042 * 130.26045 * 3 2 1 6 6 S 1.65602 * 119.99912 * 265.00397 * 5 3 2 7 7 O 1.42103 * 104.27577 * 181.07198 * 6 5 3 8 8 O 1.42102 * 104.27350 * 308.92310 * 6 5 3 9 9 C 1.81393 * 104.45198 * 64.99812 * 6 5 3 10 10 C 1.52996 * 109.47187 * 180.02562 * 9 6 5 11 11 C 1.53003 * 109.47022 * 300.00081 * 10 9 6 12 12 C 1.53002 * 109.47297 * 59.99487 * 10 9 6 13 13 C 1.50696 * 109.47503 * 179.97438 * 10 9 6 14 14 H 1.07997 * 120.00069 * 0.02562 * 13 10 9 15 15 C 1.37883 * 120.00150 * 179.97438 * 13 10 9 16 16 N 1.31512 * 119.99814 * 359.97438 * 15 13 10 17 17 Si 1.86806 * 119.99750 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47356 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47041 * 120.00260 * 17 15 13 20 20 H 1.48498 * 109.46831 * 240.00054 * 17 15 13 21 21 C 1.50701 * 109.47095 * 250.26086 * 3 2 1 22 22 C 1.38240 * 119.99637 * 279.72740 * 21 3 2 23 23 C 1.38235 * 119.99714 * 179.78957 * 22 21 3 24 24 C 1.38241 * 119.99670 * 0.44227 * 23 22 21 25 25 C 1.38230 * 120.00217 * 359.81044 * 24 23 22 26 26 C 1.38227 * 120.00139 * 100.00169 * 21 3 2 27 27 H 4.18736 * 15.03981 * 359.97438 * 4 2 1 28 28 H 0.96997 * 120.00199 * 84.99299 * 5 3 2 29 29 H 1.08999 * 109.47190 * 299.99774 * 9 6 5 30 30 H 1.09002 * 109.47377 * 60.00151 * 9 6 5 31 31 H 1.08996 * 109.47665 * 59.99953 * 11 10 9 32 32 H 1.09004 * 109.47618 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.46920 * 299.99690 * 11 10 9 34 34 H 1.08999 * 109.46947 * 60.00529 * 12 10 9 35 35 H 1.08998 * 109.47086 * 179.97438 * 12 10 9 36 36 H 1.08997 * 109.47499 * 300.00400 * 12 10 9 37 37 H 0.97000 * 119.99374 * 179.97438 * 16 15 13 38 38 H 1.08002 * 119.99947 * 359.97438 * 22 21 3 39 39 H 1.07994 * 120.00389 * 180.27360 * 23 22 21 40 40 H 1.07998 * 119.99863 * 179.83856 * 24 23 22 41 41 H 1.08005 * 119.99886 * 180.02562 * 25 24 23 42 42 H 1.08005 * 119.99940 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0104 -0.1831 5 7 3.1339 0.8935 -1.0540 6 16 3.5279 0.2810 -2.5413 7 8 3.9759 1.4106 -3.2780 8 8 4.4038 -0.8005 -2.2540 9 6 1.9568 -0.3323 -3.2090 10 6 2.1916 -0.9305 -4.5975 11 6 2.7558 0.1453 -5.5276 12 6 3.1875 -2.0873 -4.4927 13 6 0.8865 -1.4406 -5.1520 14 1 -0.0199 -1.3470 -4.5723 15 6 0.8494 -2.0258 -6.3999 16 7 1.9529 -2.1384 -7.1065 17 14 -0.7686 -2.6574 -7.0875 18 1 -1.8538 -2.4125 -6.1039 19 1 -1.0787 -1.9476 -8.3545 20 1 -0.6593 -4.1148 -7.3506 21 6 3.1481 0.4808 1.3373 22 6 3.1871 1.8343 1.6156 23 6 3.6436 2.2745 2.8439 24 6 4.0696 1.3616 3.7905 25 6 4.0355 0.0084 3.5103 26 6 3.5749 -0.4320 2.2836 27 1 -1.0500 -0.0011 0.0003 28 1 3.2260 1.8434 -0.8808 29 1 1.5551 -1.0990 -2.5467 30 1 1.2472 0.4918 -3.2834 31 1 3.6999 0.5139 -5.1265 32 1 2.9235 -0.2809 -6.5167 33 1 2.0463 0.9695 -5.6023 34 1 2.7856 -2.8538 -3.8301 35 1 3.3544 -2.5138 -5.4817 36 1 4.1316 -1.7188 -4.0914 37 1 1.9267 -2.5504 -7.9842 38 1 2.8582 2.5477 0.8744 39 1 3.6700 3.3316 3.0630 40 1 4.4287 1.7056 4.7492 41 1 4.3679 -0.7048 4.2501 42 1 3.5481 -1.4893 2.0647 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827906129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:07 Heat of formation + Delta-G solvation = -10.095446 kcal Electronic energy + Delta-G solvation = -25129.139966 eV Core-core repulsion = 21588.246200 eV Total energy + Delta-G solvation = -3540.893767 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.49207 -38.21848 -38.15094 -37.27271 -36.95057 -33.67157 -33.21227 -31.99137 -31.65495 -28.34963 -27.70248 -27.31831 -27.15063 -23.57787 -22.63339 -21.41188 -20.37530 -19.55494 -19.03468 -18.20587 -17.82498 -17.02213 -16.95378 -16.64830 -16.18156 -16.09562 -15.86004 -15.04403 -14.98838 -14.74115 -14.44578 -14.30823 -14.21003 -13.89310 -13.68524 -13.31418 -13.10435 -12.93191 -12.91688 -12.77001 -12.54092 -12.41444 -12.21186 -12.13403 -12.02329 -11.95505 -11.58749 -11.58314 -11.41658 -11.19571 -10.95349 -10.53333 -10.42381 -9.83382 -9.74862 -8.03343 -6.21698 -0.71445 0.34541 0.48908 1.42950 1.45930 1.46561 1.55547 1.83571 2.15583 2.44083 2.75756 2.83504 3.18414 3.23815 3.42718 3.68590 3.87054 3.96018 4.08388 4.15615 4.20464 4.30710 4.46050 4.58303 4.62202 4.78631 4.84980 4.85826 4.96812 4.97826 5.06306 5.07496 5.14677 5.37112 5.49856 5.54237 5.60585 5.61641 5.64714 5.91735 5.96639 6.07961 6.10753 6.33796 6.62560 6.82868 7.46516 8.96902 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.022591 B = 0.003563 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.151614 B = 7856.604777 C = 8385.117589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.246 4.246 3 C 0.300 3.700 4 H 0.116 0.884 5 N -1.103 6.103 6 S 2.611 3.389 7 O -0.986 6.986 8 O -0.984 6.984 9 C -0.578 4.578 10 C 0.070 3.930 11 C -0.161 4.161 12 C -0.160 4.160 13 C -0.515 4.515 14 H 0.063 0.937 15 C 0.018 3.982 16 N -0.908 5.908 17 Si 0.955 3.045 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.099 4.099 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.120 4.120 27 H 0.250 0.750 28 H 0.424 0.576 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.261 0.739 38 H 0.128 0.872 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 6.520 21.453 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.248 4.248 3 C 0.193 3.807 4 H 0.133 0.867 5 N -0.862 5.862 6 S 2.708 3.292 7 O -0.977 6.977 8 O -0.974 6.974 9 C -0.711 4.711 10 C 0.068 3.932 11 C -0.218 4.218 12 C -0.218 4.218 13 C -0.554 4.554 14 H 0.081 0.919 15 C -0.182 4.182 16 N -0.547 5.547 17 Si 0.781 3.219 18 H -0.189 1.189 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.100 4.100 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.137 4.137 25 C -0.140 4.140 26 C -0.139 4.139 27 H 0.266 0.734 28 H 0.261 0.739 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.146 0.854 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.600 6.284 20.875 21.809 hybrid contribution -1.496 -0.147 -0.804 1.704 sum -0.895 6.137 20.071 21.007 Atomic orbital electron populations 1.25774 0.96619 0.97397 0.96811 1.23393 0.94660 1.03253 1.03476 1.16367 0.83840 0.94480 0.85985 0.86670 1.55639 1.83371 1.19278 1.27903 1.04900 0.77747 0.73803 0.72703 1.93518 1.81061 1.51832 1.71250 1.93513 1.63251 1.57108 1.83536 1.30427 1.19872 1.11931 1.08895 1.17930 0.96075 0.92019 0.87153 1.22216 0.97961 0.97922 1.03736 1.22207 0.96882 0.99866 1.02818 1.21300 0.93533 1.38733 1.01863 0.91907 1.25674 0.99281 0.95980 0.97216 1.69948 1.27936 1.44528 1.12247 0.85556 0.80380 0.77754 0.78238 1.18909 1.20993 1.20937 1.19658 1.01310 0.94964 0.94106 1.21143 0.99854 0.94708 0.98113 1.21453 0.98501 1.01189 0.93037 1.21581 0.98689 0.93155 1.00314 1.21464 0.99069 0.96838 0.96603 1.21302 0.98509 1.00088 0.93989 0.73413 0.73916 0.85007 0.84716 0.94995 0.90872 0.94107 0.94061 0.90934 0.94861 0.92916 0.85395 0.83656 0.83346 0.83454 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 19.25 74.32 1.43 -1.70 16 2 C -0.25 -6.07 12.07 31.13 0.38 -5.70 16 3 C 0.30 7.71 2.85 42.44 0.12 7.83 16 4 H 0.12 3.03 7.34 -2.39 -0.02 3.02 16 5 N -1.10 -30.71 5.27 -180.21 -0.95 -31.66 16 6 S 2.61 96.94 4.47 -56.49 -0.25 96.68 16 7 O -0.99 -41.43 15.70 -127.65 -2.00 -43.44 16 8 O -0.98 -41.17 15.01 -127.65 -1.92 -43.08 16 9 C -0.58 -22.43 4.63 71.98 0.33 -22.10 16 10 C 0.07 3.41 0.52 -52.93 -0.03 3.39 16 11 C -0.16 -8.04 7.78 71.98 0.56 -7.48 16 12 C -0.16 -7.97 7.77 71.98 0.56 -7.41 16 13 C -0.52 -26.84 8.01 25.60 0.21 -26.63 16 14 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 15 C 0.02 0.94 5.15 84.66 0.44 1.38 16 16 N -0.91 -50.26 9.35 21.45 0.20 -50.06 16 17 Si 0.95 42.05 29.54 68.60 2.03 44.07 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 C -0.10 -2.23 4.92 -19.87 -0.10 -2.33 16 22 C -0.12 -2.38 9.15 22.27 0.20 -2.18 16 23 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 24 C -0.12 -1.72 10.05 22.27 0.22 -1.50 16 25 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 26 C -0.12 -2.40 9.67 22.27 0.22 -2.19 16 27 H 0.25 3.34 7.80 -4.42 -0.03 3.30 16 28 H 0.42 9.95 7.03 -96.75 -0.68 9.27 16 29 H 0.13 4.68 7.73 -2.39 -0.02 4.67 16 30 H 0.13 4.75 8.14 -2.39 -0.02 4.73 16 31 H 0.03 1.52 5.47 -2.39 -0.01 1.51 16 32 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 3.94 6.07 -2.39 -0.01 3.92 16 36 H 0.03 1.58 5.46 -2.39 -0.01 1.56 16 37 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 38 H 0.13 2.26 6.80 -2.91 -0.02 2.24 16 39 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.13 2.36 8.04 -2.91 -0.02 2.34 16 Total: -1.00 -68.97 355.03 2.44 -66.53 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.35 Total: 31.04 kcal Atomic # 6 Polarization: -75.07 SS G_CDS: 4.99 Total: -70.08 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -0.75 Total: -81.72 kcal Atomic # 8 Polarization: -82.60 SS G_CDS: -3.92 Total: -86.52 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: 96.94 SS G_CDS: -0.25 Total: 96.68 kcal Total: -68.97 2.44 -66.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827906129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.431 kcal (2) G-P(sol) polarization free energy of solvation -68.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds