Wall clock time and date at job start Tue Mar 31 2020 13:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47665 * 15.38081 * 3 2 1 5 5 N 1.46509 * 109.46923 * 255.38722 * 3 2 1 6 6 S 1.65604 * 119.99844 * 95.00224 * 5 3 2 7 7 O 1.42095 * 106.40018 * 311.45546 * 6 5 3 8 8 O 1.42098 * 106.39919 * 178.53897 * 6 5 3 9 9 C 1.76201 * 107.21824 * 64.99985 * 6 5 3 10 10 C 1.38234 * 120.00103 * 90.00267 * 9 6 5 11 11 C 1.38238 * 119.99675 * 180.27958 * 10 9 6 12 12 C 1.38229 * 120.00124 * 359.45911 * 11 10 9 13 13 C 1.50699 * 120.00230 * 180.28369 * 12 11 10 14 14 C 1.50691 * 109.47261 * 270.27992 * 13 12 11 15 15 H 1.08000 * 120.00158 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00152 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00173 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99964 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47356 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47320 * 119.99435 * 18 16 14 21 21 H 1.48500 * 109.47351 * 239.99262 * 18 16 14 22 22 C 1.38234 * 119.99957 * 0.56005 * 12 11 10 23 23 C 1.38234 * 119.99657 * 270.01898 * 9 6 5 24 24 C 1.53000 * 109.47468 * 135.38725 * 3 2 1 25 25 C 1.52997 * 109.47171 * 300.00069 * 24 3 2 26 26 C 1.53006 * 109.46761 * 59.99747 * 24 3 2 27 27 H 4.18747 * 15.03865 * 0.02562 * 4 2 1 28 28 H 0.96997 * 119.99899 * 274.99797 * 5 3 2 29 29 H 1.08002 * 119.99744 * 359.97438 * 10 9 6 30 30 H 1.08004 * 119.99577 * 179.72816 * 11 10 9 31 31 H 1.09007 * 109.47085 * 30.27493 * 13 12 11 32 32 H 1.08998 * 109.47270 * 150.26989 * 13 12 11 33 33 H 0.97003 * 120.00412 * 180.02562 * 17 16 14 34 34 H 1.08001 * 120.00274 * 179.72697 * 22 12 11 35 35 H 1.07997 * 120.00460 * 359.97438 * 23 9 6 36 36 H 1.08993 * 109.47334 * 179.97438 * 24 3 2 37 37 H 1.09003 * 109.46880 * 59.99226 * 25 24 3 38 38 H 1.08998 * 109.47402 * 179.97438 * 25 24 3 39 39 H 1.08999 * 109.47123 * 299.99844 * 25 24 3 40 40 H 1.09004 * 109.47158 * 60.00368 * 26 24 3 41 41 H 1.09001 * 109.46767 * 180.02562 * 26 24 3 42 42 H 1.08993 * 109.47178 * 300.00072 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0099 -0.9900 -0.2726 5 7 3.1341 0.3494 1.3366 6 16 3.5286 -0.8466 2.4121 7 8 2.4414 -1.7616 2.4111 8 8 3.9937 -0.1936 3.5854 9 6 4.9096 -1.7137 1.7446 10 6 6.1947 -1.3028 2.0453 11 6 7.2781 -1.9796 1.5169 12 6 7.0764 -3.0740 0.6969 13 6 8.2575 -3.8157 0.1260 14 6 8.6425 -3.2052 -1.1968 15 1 8.0872 -2.3645 -1.5855 16 6 9.7030 -3.7206 -1.9114 17 7 10.3789 -4.7448 -1.4384 18 14 10.1797 -2.9643 -3.5515 19 1 9.2685 -1.8325 -3.8583 20 1 11.5780 -2.4691 -3.4806 21 1 10.0715 -3.9900 -4.6199 22 6 5.7912 -3.4846 0.3959 23 6 4.7078 -2.8046 0.9200 24 6 3.1556 1.0277 -1.0131 25 6 2.6458 0.6636 -2.4089 26 6 2.6449 2.4183 -0.6303 27 1 -1.0500 -0.0008 -0.0007 28 1 3.2264 1.2807 1.5916 29 1 6.3523 -0.4501 2.6890 30 1 8.2822 -1.6559 1.7483 31 1 9.0982 -3.7466 0.8164 32 1 7.9928 -4.8629 -0.0203 33 1 11.1253 -5.1072 -1.9409 34 1 5.6336 -4.3370 -0.2483 35 1 3.7037 -3.1257 0.6852 36 1 4.2455 1.0285 -1.0127 37 1 1.5558 0.6631 -2.4089 38 1 3.0085 1.3956 -3.1306 39 1 3.0096 -0.3270 -2.6816 40 1 3.0081 2.6778 0.3642 41 1 3.0076 3.1500 -1.3523 42 1 1.5550 2.4178 -0.6303 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885167883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:21 Heat of formation + Delta-G solvation = -14.006412 kcal Electronic energy + Delta-G solvation = -24650.134179 eV Core-core repulsion = 21109.070820 eV Total energy + Delta-G solvation = -3541.063359 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.85578 -38.39067 -37.10702 -35.77907 -33.71398 -33.18535 -32.32700 -31.59136 -30.61232 -27.54767 -27.42455 -26.30119 -23.75979 -22.38497 -21.17579 -20.93709 -19.52858 -18.57429 -17.90121 -17.17528 -16.48206 -16.42656 -15.48037 -15.22470 -15.11534 -14.52804 -14.40110 -14.37995 -13.91613 -13.71802 -13.14612 -12.98430 -12.85578 -12.43463 -12.23427 -12.17332 -12.02339 -11.93694 -11.79955 -11.63557 -11.51645 -11.27436 -11.10141 -10.96347 -10.93526 -10.60573 -10.59800 -10.51812 -10.24057 -10.05624 -9.74435 -9.64182 -8.62474 -8.57235 -8.41485 -6.20018 -4.25330 0.44605 1.29195 1.76193 2.51427 2.71547 3.19722 3.23470 3.28059 3.31498 3.72865 4.08465 4.13021 4.33943 4.44584 4.55816 4.61490 4.80512 4.98564 5.13674 5.19816 5.20904 5.35640 5.42145 5.53800 5.65215 5.69409 5.70545 5.75340 5.81554 5.87150 5.88199 6.04658 6.11068 6.21494 6.29782 6.47480 6.75449 6.81023 6.88347 7.26996 7.40646 7.49020 7.56729 7.74611 8.09925 8.79447 9.39600 10.90102 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.003844 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.942194 B = 7282.586095 C = 8522.855863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.190 4.190 3 C 0.269 3.731 4 H 0.108 0.892 5 N -1.111 6.111 6 S 2.694 3.306 7 O -0.959 6.959 8 O -0.965 6.965 9 C -0.704 4.704 10 C -0.021 4.021 11 C -0.145 4.145 12 C 0.028 3.972 13 C 0.038 3.962 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.144 4.144 23 C -0.027 4.027 24 C -0.098 4.098 25 C -0.149 4.149 26 C -0.149 4.149 27 H 0.217 0.783 28 H 0.418 0.582 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.883 11.637 1.659 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.192 4.192 3 C 0.162 3.838 4 H 0.125 0.875 5 N -0.869 5.869 6 S 2.787 3.213 7 O -0.949 6.949 8 O -0.955 6.955 9 C -0.794 4.794 10 C -0.040 4.040 11 C -0.164 4.164 12 C 0.027 3.973 13 C 0.001 3.999 14 C -0.555 4.555 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.163 4.163 23 C -0.047 4.047 24 C -0.118 4.118 25 C -0.207 4.207 26 C -0.207 4.207 27 H 0.234 0.766 28 H 0.254 0.746 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.161 11.167 2.387 19.788 hybrid contribution 0.808 0.501 -1.304 1.613 sum -15.353 11.668 1.083 19.314 Atomic orbital electron populations 1.24894 0.95818 1.00729 0.98980 1.23236 0.94458 1.00367 1.01099 1.17644 0.83697 1.00138 0.82341 0.87458 1.55786 1.81367 1.22556 1.27150 1.01721 0.73971 0.72982 0.72635 1.93576 1.51854 1.63446 1.85988 1.93567 1.82380 1.75223 1.44340 1.30291 1.15341 1.14269 1.19504 1.20772 0.90979 0.97393 0.94864 1.21253 0.98885 0.96863 0.99352 1.21122 0.96593 0.91787 0.87749 1.18555 0.89751 0.95402 0.96182 1.20982 1.14929 1.16222 1.03335 0.92238 1.25009 0.96037 0.94905 0.98215 1.69954 1.20505 1.23727 1.38669 0.86437 0.78467 0.79241 0.83316 1.19610 1.20809 1.20808 1.21246 0.92095 1.01467 1.01477 1.20800 0.99477 0.92089 0.92320 1.21394 1.01590 0.94458 0.94309 1.21845 1.01581 1.02192 0.95114 1.21870 1.01634 0.95796 1.01362 0.76637 0.74648 0.85206 0.85291 0.94674 0.94671 0.92650 0.85289 0.85282 0.88961 0.92199 0.91923 0.91920 0.92556 0.92066 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 19.25 29.55 0.57 -1.27 16 2 C -0.19 -2.12 10.35 -37.12 -0.38 -2.50 16 3 C 0.27 2.86 2.47 -70.71 -0.17 2.68 16 4 H 0.11 1.15 7.23 -51.93 -0.38 0.77 16 5 N -1.11 -11.98 5.39 -7.30 -0.04 -12.02 16 6 S 2.69 37.61 5.65 -107.50 -0.61 37.00 16 7 O -0.96 -15.67 17.04 -57.17 -0.97 -16.64 16 8 O -0.96 -15.42 17.28 -57.17 -0.99 -16.41 16 9 C -0.70 -10.82 5.82 -39.58 -0.23 -11.05 16 10 C -0.02 -0.33 9.52 -39.58 -0.38 -0.70 16 11 C -0.14 -2.62 9.70 -39.58 -0.38 -3.00 16 12 C 0.03 0.56 5.07 -104.63 -0.53 0.03 16 13 C 0.04 0.91 5.10 -29.04 -0.15 0.76 16 14 C -0.52 -13.57 9.09 -34.44 -0.31 -13.89 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.14 13.29 55.43 0.74 -24.41 16 18 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.14 -2.59 9.70 -39.58 -0.38 -2.98 16 23 C -0.03 -0.43 8.90 -39.58 -0.35 -0.79 16 24 C -0.10 -0.87 2.93 -90.62 -0.27 -1.14 16 25 C -0.15 -1.27 8.94 37.16 0.33 -0.94 16 26 C -0.15 -1.16 8.75 37.16 0.33 -0.83 16 27 H 0.22 1.38 7.80 -54.09 -0.42 0.96 16 28 H 0.42 3.59 7.03 -34.48 -0.24 3.35 16 29 H 0.13 1.77 7.62 -52.49 -0.40 1.37 16 30 H 0.13 2.22 8.06 -52.48 -0.42 1.79 16 31 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 35 H 0.13 1.76 7.62 -52.49 -0.40 1.36 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.50 7.23 -51.93 -0.38 0.12 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.40 6.51 -51.93 -0.34 0.06 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.48 7.23 -51.93 -0.38 0.10 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -32.57 369.73 -9.58 -42.15 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.84 Total: 3.37 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: -2.41 Total: -34.08 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.70 Total: -36.43 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.96 Total: -33.05 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 37.61 SS G_CDS: -0.61 Total: 37.00 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.57 -9.58 -42.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885167883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.147 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds