Wall clock time and date at job start Tue Mar 31 2020 12:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34702 * 117.00147 * 2 1 4 4 O 1.21466 * 120.00062 * 359.97438 * 3 2 1 5 5 C 1.47747 * 120.00308 * 179.97438 * 3 2 1 6 6 C 1.39721 * 120.08799 * 359.97438 * 5 3 2 7 7 C 1.38010 * 120.10292 * 180.02562 * 6 5 3 8 8 C 1.50698 * 119.85693 * 179.97438 * 7 6 5 9 9 C 1.38155 * 120.28210 * 359.72038 * 7 6 5 10 10 C 1.39473 * 120.17579 * 0.55562 * 9 7 6 11 11 C 1.48335 * 120.04795 * 179.71890 * 10 9 7 12 12 C 1.39804 * 119.54107 * 359.73012 * 11 10 9 13 13 C 1.37714 * 121.17420 * 180.02562 * 12 11 10 14 14 C 1.39579 * 120.18626 * 359.97438 * 13 12 11 15 15 C 1.43198 * 120.45858 * 179.97438 * 14 13 12 16 16 N 9.79988 * 162.95161 * 359.93541 * 4 1 2 17 17 C 1.46537 * 119.08552 * 0.02562 * 14 13 12 18 18 C 1.40831 * 120.55418 * 180.02562 * 17 14 13 19 19 H 1.07999 * 119.99985 * 335.48547 * 18 17 14 20 20 C 1.40233 * 120.00202 * 155.75776 * 18 17 14 21 21 N 1.30665 * 119.99843 * 342.44900 * 20 18 17 22 22 Si 1.86801 * 120.00401 * 162.44907 * 20 18 17 23 23 H 1.48498 * 109.47297 * 59.99894 * 22 20 18 24 24 H 1.48496 * 109.47505 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47000 * 300.00010 * 22 20 18 26 26 C 1.38594 * 119.53115 * 180.02562 * 11 10 9 27 27 C 1.39132 * 119.89627 * 359.44465 * 10 9 7 28 28 H 1.09002 * 109.47133 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47004 * 300.00010 * 1 2 3 30 30 H 1.08997 * 109.46944 * 60.00076 * 1 2 3 31 31 H 1.08002 * 119.94519 * 0.02562 * 6 5 3 32 32 H 1.09002 * 109.47114 * 90.00122 * 8 7 6 33 33 H 1.09003 * 109.46751 * 209.99529 * 8 7 6 34 34 H 1.08996 * 109.47308 * 330.00068 * 8 7 6 35 35 H 1.08000 * 119.91251 * 180.28275 * 9 7 6 36 36 H 1.08002 * 119.41109 * 0.04324 * 12 11 10 37 37 H 1.07999 * 119.90810 * 179.97438 * 13 12 11 38 38 H 0.96996 * 119.99716 * 185.01658 * 21 20 18 39 39 H 1.08000 * 120.13833 * 359.97438 * 26 11 10 40 40 H 1.07998 * 120.14247 * 180.29444 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2189 -0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3018 0.1069 0.0017 7 6 5.6801 0.1789 0.0027 8 6 6.4974 -1.0872 0.0045 9 6 6.3136 1.4066 -0.0031 10 6 5.5637 2.5825 0.0016 11 6 6.2469 3.8992 0.0016 12 6 7.6440 3.9508 0.0027 13 6 8.3129 5.1546 0.0033 14 6 7.5991 6.3540 0.0023 15 6 8.2886 7.6091 0.0035 16 7 8.8357 8.6047 0.0014 17 6 6.1343 6.3113 0.0012 18 6 5.3834 7.5027 -0.0003 19 1 5.8151 8.4136 0.3874 20 6 4.0731 7.5050 -0.4999 21 7 3.6637 6.5277 -1.2644 22 14 2.9129 8.9054 -0.0726 23 1 3.4842 10.1872 -0.5581 24 1 1.5968 8.6728 -0.7198 25 1 2.7353 8.9690 1.4004 26 6 5.4912 5.0609 0.0069 27 6 4.1738 2.5187 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8121 -0.8557 0.0017 32 1 6.6953 -1.3934 -1.0228 33 1 7.4418 -0.9093 0.5189 34 1 5.9463 -1.8747 0.5185 35 1 7.3925 1.4559 -0.0068 36 1 8.2087 3.0302 0.0027 37 1 9.3927 5.1706 0.0045 38 1 2.7829 6.5648 -1.6691 39 1 4.4126 5.0062 0.0105 40 1 3.5892 3.4267 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243023614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:11 Heat of formation + Delta-G solvation = -27.209127 kcal Electronic energy + Delta-G solvation = -25218.161031 eV Core-core repulsion = 21541.081209 eV Total energy + Delta-G solvation = -3677.079823 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.115 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.47837 -39.11009 -37.51641 -36.36477 -35.18946 -34.23416 -32.91254 -32.02358 -30.03294 -28.87217 -27.74277 -26.88321 -25.77279 -23.96413 -23.21489 -21.32513 -20.39103 -19.94402 -17.96547 -17.59057 -17.07441 -16.75356 -16.31884 -15.84914 -15.43346 -14.98350 -14.57323 -13.83776 -13.72572 -13.63446 -13.38698 -13.26806 -13.23132 -12.77646 -12.70851 -12.36962 -12.25800 -12.13356 -12.07567 -11.83391 -11.65716 -11.43363 -11.29431 -11.20004 -10.99239 -10.89177 -10.82651 -10.61647 -10.41775 -10.04417 -9.74331 -9.55790 -8.97459 -8.62151 -7.81117 -7.29651 -7.09955 -4.75442 0.83760 1.28685 2.20952 2.64216 2.69561 2.74953 2.93031 2.95567 3.07955 3.68388 3.83547 3.90435 4.35413 4.43048 4.70157 4.88971 4.98608 5.01391 5.09022 5.25785 5.34732 5.38277 5.41596 5.48666 5.54892 5.58061 5.62058 5.82459 5.90110 6.04271 6.12449 6.27056 6.34370 6.47397 6.57523 6.62624 6.70933 6.86721 6.92490 7.07393 7.17839 7.43388 7.62963 7.70365 7.81595 7.83143 8.15595 8.39369 8.49271 8.80883 9.73282 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.010585 B = 0.004449 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.614556 B = 6292.654054 C = 8840.964162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.508 3.492 4 O -0.500 6.500 5 C -0.126 4.126 6 C -0.079 4.079 7 C -0.104 4.104 8 C -0.110 4.110 9 C -0.081 4.081 10 C -0.024 4.024 11 C -0.024 4.024 12 C -0.238 4.238 13 C -0.027 4.027 14 C -0.186 4.186 15 C 0.300 3.700 16 N -0.510 5.510 17 C 0.147 3.853 18 C -0.426 4.426 19 H 0.088 0.912 20 C 0.075 3.925 21 N -0.760 5.760 22 Si 0.916 3.084 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.257 1.257 26 C -0.140 4.140 27 C -0.050 4.050 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.131 0.869 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.294 0.706 39 H 0.134 0.866 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.837 -16.453 1.420 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.353 3.647 4 O -0.388 6.388 5 C -0.127 4.127 6 C -0.098 4.098 7 C -0.104 4.104 8 C -0.166 4.166 9 C -0.099 4.099 10 C -0.024 4.024 11 C -0.025 4.025 12 C -0.258 4.258 13 C -0.047 4.047 14 C -0.192 4.192 15 C -0.010 4.010 16 N -0.190 5.190 17 C 0.142 3.858 18 C -0.453 4.453 19 H 0.106 0.894 20 C -0.149 4.149 21 N -0.382 5.382 22 Si 0.739 3.261 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.159 4.159 27 C -0.068 4.068 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.151 0.849 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.151 0.849 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.465 -14.736 1.311 15.454 hybrid contribution -1.076 0.271 -0.025 1.110 sum -5.541 -14.465 1.287 15.543 Atomic orbital electron populations 1.23242 0.76376 1.03432 1.02668 1.86534 1.23250 1.33025 1.84711 1.21336 0.89315 0.81273 0.72736 1.90861 1.66711 1.35904 1.45370 1.18926 0.88414 0.94977 1.10370 1.21187 0.93195 0.97403 0.97982 1.19747 0.93507 0.95359 1.01810 1.20749 0.99317 0.94270 1.02297 1.21477 1.00495 0.90931 0.96977 1.19021 0.92003 0.93648 0.97737 1.18408 0.93008 0.90406 1.00647 1.20075 0.92624 0.96102 1.16968 1.20360 0.97268 0.91191 0.95909 1.16961 0.92004 0.85513 1.24763 1.25804 0.91418 0.92598 0.91168 1.81023 1.11389 1.11356 1.15184 1.18321 0.88182 0.93014 0.86322 1.19782 0.96250 0.96594 1.32682 0.89437 1.26132 0.98466 0.97469 0.92793 1.69642 1.20276 1.29834 1.18408 0.86189 0.78570 0.80756 0.80599 1.18505 1.19655 1.18101 1.21496 0.99829 0.90157 1.04437 1.21556 0.94339 0.96864 0.94072 0.88203 0.91908 0.91867 0.85132 0.91246 0.91422 0.91640 0.84945 0.88124 0.88141 0.89452 0.84888 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.59 9.81 -40.50 -0.40 -4.99 16 3 C 0.51 8.04 7.90 34.62 0.27 8.31 16 4 O -0.50 -9.31 16.13 -19.24 -0.31 -9.62 16 5 C -0.13 -1.98 5.87 -105.02 -0.62 -2.59 16 6 C -0.08 -1.04 9.26 -39.11 -0.36 -1.40 16 7 C -0.10 -1.30 5.87 -104.74 -0.61 -1.92 16 8 C -0.11 -0.97 10.00 36.00 0.36 -0.61 16 9 C -0.08 -1.17 9.06 -39.15 -0.35 -1.52 16 10 C -0.02 -0.42 5.87 -104.95 -0.62 -1.04 16 11 C -0.02 -0.48 5.86 -105.03 -0.62 -1.09 16 12 C -0.24 -4.48 9.37 -39.19 -0.37 -4.85 16 13 C -0.03 -0.53 9.74 -39.27 -0.38 -0.91 16 14 C -0.19 -4.23 5.95 -104.13 -0.62 -4.85 16 15 C 0.30 7.01 14.28 -22.47 -0.32 6.69 16 16 N -0.51 -12.28 18.54 41.84 0.78 -11.51 16 17 C 0.15 3.53 5.73 -104.68 -0.60 2.93 16 18 C -0.43 -10.40 8.58 -37.85 -0.32 -10.73 16 19 H 0.09 2.16 7.37 -52.49 -0.39 1.77 16 20 C 0.08 1.72 5.16 -17.30 -0.09 1.63 16 21 N -0.76 -17.63 10.95 55.56 0.61 -17.03 16 22 Si 0.92 17.58 29.60 -169.99 -5.03 12.55 16 23 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 24 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 25 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 26 C -0.14 -3.18 8.06 -38.55 -0.31 -3.49 16 27 C -0.05 -0.90 8.95 -38.82 -0.35 -1.25 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.13 1.41 7.60 -52.49 -0.40 1.01 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 34 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.13 1.69 6.12 -52.49 -0.32 1.37 16 36 H 0.10 1.59 6.09 -52.49 -0.32 1.27 16 37 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 39 H 0.13 3.10 4.24 -52.49 -0.22 2.87 16 40 H 0.15 2.88 5.73 -52.49 -0.30 2.58 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -27.46 354.63 -7.89 -35.35 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.04 Total: 5.18 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -4.84 Total: -15.27 kcal Atomic # 7 Polarization: -29.92 SS G_CDS: 1.38 Total: -28.53 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.71 Total: -14.61 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.46 -7.89 -35.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243023614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.139 kcal (2) G-P(sol) polarization free energy of solvation -27.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds