Wall clock time and date at job start Tue Mar 31 2020 12:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34702 * 117.00147 * 2 1 4 4 O 1.21466 * 120.00062 * 359.97438 * 3 2 1 5 5 C 1.47747 * 120.00308 * 179.97438 * 3 2 1 6 6 C 1.39721 * 120.08799 * 359.97438 * 5 3 2 7 7 C 1.38010 * 120.10292 * 180.02562 * 6 5 3 8 8 C 1.50698 * 119.85693 * 179.97438 * 7 6 5 9 9 C 1.38155 * 120.28210 * 359.72038 * 7 6 5 10 10 C 1.39473 * 120.17579 * 0.55562 * 9 7 6 11 11 C 1.48335 * 120.04795 * 179.71890 * 10 9 7 12 12 C 1.39804 * 119.54107 * 359.73012 * 11 10 9 13 13 C 1.37714 * 121.17420 * 180.02562 * 12 11 10 14 14 C 1.39579 * 120.18626 * 359.97438 * 13 12 11 15 15 C 1.43198 * 120.45858 * 179.97438 * 14 13 12 16 16 N 9.79988 * 162.95161 * 359.93541 * 4 1 2 17 17 C 1.46537 * 119.08552 * 0.02562 * 14 13 12 18 18 C 1.40831 * 120.55418 * 180.02562 * 17 14 13 19 19 H 1.07999 * 119.99985 * 335.48547 * 18 17 14 20 20 C 1.40233 * 120.00202 * 155.75776 * 18 17 14 21 21 N 1.30665 * 119.99843 * 342.44900 * 20 18 17 22 22 Si 1.86801 * 120.00401 * 162.44907 * 20 18 17 23 23 H 1.48498 * 109.47297 * 59.99894 * 22 20 18 24 24 H 1.48496 * 109.47505 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47000 * 300.00010 * 22 20 18 26 26 C 1.38594 * 119.53115 * 180.02562 * 11 10 9 27 27 C 1.39132 * 119.89627 * 359.44465 * 10 9 7 28 28 H 1.09002 * 109.47133 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47004 * 300.00010 * 1 2 3 30 30 H 1.08997 * 109.46944 * 60.00076 * 1 2 3 31 31 H 1.08002 * 119.94519 * 0.02562 * 6 5 3 32 32 H 1.09002 * 109.47114 * 90.00122 * 8 7 6 33 33 H 1.09003 * 109.46751 * 209.99529 * 8 7 6 34 34 H 1.08996 * 109.47308 * 330.00068 * 8 7 6 35 35 H 1.08000 * 119.91251 * 180.28275 * 9 7 6 36 36 H 1.08002 * 119.41109 * 0.04324 * 12 11 10 37 37 H 1.07999 * 119.90810 * 179.97438 * 13 12 11 38 38 H 0.96996 * 119.99716 * 185.01658 * 21 20 18 39 39 H 1.08000 * 120.13833 * 359.97438 * 26 11 10 40 40 H 1.07998 * 120.14247 * 180.29444 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2189 -0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3018 0.1069 0.0017 7 6 5.6801 0.1789 0.0027 8 6 6.4974 -1.0872 0.0045 9 6 6.3136 1.4066 -0.0031 10 6 5.5637 2.5825 0.0016 11 6 6.2469 3.8992 0.0016 12 6 7.6440 3.9508 0.0027 13 6 8.3129 5.1546 0.0033 14 6 7.5991 6.3540 0.0023 15 6 8.2886 7.6091 0.0035 16 7 8.8357 8.6047 0.0014 17 6 6.1343 6.3113 0.0012 18 6 5.3834 7.5027 -0.0003 19 1 5.8151 8.4136 0.3874 20 6 4.0731 7.5050 -0.4999 21 7 3.6637 6.5277 -1.2644 22 14 2.9129 8.9054 -0.0726 23 1 3.4842 10.1872 -0.5581 24 1 1.5968 8.6728 -0.7198 25 1 2.7353 8.9690 1.4004 26 6 5.4912 5.0609 0.0069 27 6 4.1738 2.5187 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8121 -0.8557 0.0017 32 1 6.6953 -1.3934 -1.0228 33 1 7.4418 -0.9093 0.5189 34 1 5.9463 -1.8747 0.5185 35 1 7.3925 1.4559 -0.0068 36 1 8.2087 3.0302 0.0027 37 1 9.3927 5.1706 0.0045 38 1 2.7829 6.5648 -1.6691 39 1 4.4126 5.0062 0.0105 40 1 3.5892 3.4267 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243023614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:10 Heat of formation + Delta-G solvation = -38.650640 kcal Electronic energy + Delta-G solvation = -25218.657173 eV Core-core repulsion = 21541.081209 eV Total energy + Delta-G solvation = -3677.575964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.115 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66334 -40.38684 -39.05446 -37.53197 -37.00104 -35.90613 -34.11049 -33.33841 -31.70176 -30.29027 -28.68819 -27.98799 -27.28969 -25.16002 -24.68396 -22.87996 -21.76165 -21.15175 -19.58896 -19.01344 -18.53501 -17.98227 -17.41504 -17.14131 -16.95930 -16.28270 -15.97958 -15.21183 -14.97687 -14.80259 -14.77725 -14.63147 -14.52455 -14.22512 -14.07126 -13.88902 -13.52015 -13.45133 -13.22809 -13.10693 -13.02881 -12.95469 -12.80753 -12.56274 -12.42661 -12.30462 -12.09828 -11.84566 -11.74167 -11.58052 -11.34887 -11.21188 -10.36020 -9.74163 -9.50974 -8.93606 -8.70420 -6.55881 -0.39182 -0.08606 0.77052 1.00847 1.30865 1.42005 1.44164 1.54300 1.63930 2.03557 2.07997 2.33942 2.64228 2.91594 3.59151 3.65328 3.69607 3.79295 3.86696 4.17171 4.28430 4.32057 4.33182 4.36999 4.44199 4.57641 4.69764 4.75079 4.79868 4.93051 5.01280 5.02109 5.10603 5.18949 5.21386 5.28787 5.37240 5.43046 5.49712 5.59665 5.77244 5.93386 5.94918 6.08632 6.14126 6.44092 6.63530 6.64465 6.76779 6.96919 8.04269 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.010585 B = 0.004449 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.614556 B = 6292.654054 C = 8840.964162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.510 3.490 4 O -0.541 6.541 5 C -0.139 4.139 6 C -0.061 4.061 7 C -0.093 4.093 8 C -0.108 4.108 9 C -0.071 4.071 10 C -0.052 4.052 11 C -0.016 4.016 12 C -0.224 4.224 13 C -0.024 4.024 14 C -0.207 4.207 15 C 0.305 3.695 16 N -0.530 5.530 17 C 0.127 3.873 18 C -0.466 4.466 19 H 0.072 0.928 20 C 0.044 3.956 21 N -0.786 5.786 22 Si 0.973 3.027 23 H -0.262 1.262 24 H -0.260 1.260 25 H -0.256 1.256 26 C -0.172 4.172 27 C -0.071 4.071 28 H 0.142 0.858 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.162 0.838 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.157 0.843 36 H 0.145 0.855 37 H 0.133 0.867 38 H 0.298 0.702 39 H 0.116 0.884 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.831 -20.710 1.552 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.356 3.644 4 O -0.433 6.433 5 C -0.140 4.140 6 C -0.079 4.079 7 C -0.093 4.093 8 C -0.165 4.165 9 C -0.089 4.089 10 C -0.052 4.052 11 C -0.017 4.017 12 C -0.243 4.243 13 C -0.044 4.044 14 C -0.213 4.213 15 C -0.003 4.003 16 N -0.210 5.210 17 C 0.122 3.878 18 C -0.494 4.494 19 H 0.090 0.910 20 C -0.177 4.177 21 N -0.409 5.409 22 Si 0.794 3.206 23 H -0.187 1.187 24 H -0.184 1.184 25 H -0.180 1.180 26 C -0.191 4.191 27 C -0.089 4.089 28 H 0.160 0.840 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.180 0.820 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.175 0.825 36 H 0.162 0.838 37 H 0.151 0.849 38 H 0.109 0.891 39 H 0.134 0.866 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.447 -19.027 1.442 19.391 hybrid contribution -1.360 1.268 -0.056 1.861 sum -4.807 -17.759 1.387 18.450 Atomic orbital electron populations 1.23616 0.74339 1.06113 1.02423 1.86512 1.25160 1.31003 1.83907 1.21463 0.89515 0.81571 0.71805 1.90845 1.67558 1.37430 1.47425 1.19005 0.88726 0.95159 1.11152 1.21580 0.93600 0.97419 0.95270 1.20204 0.93516 0.96325 0.99297 1.20862 0.99456 0.92378 1.03770 1.21748 1.01484 0.90290 0.95348 1.18949 0.91927 0.93668 1.00629 1.18769 0.93900 0.90982 0.98032 1.20557 0.92099 0.97469 1.14139 1.20745 0.98876 0.90306 0.94520 1.17230 0.91750 0.86367 1.25991 1.26016 0.91009 0.92664 0.90659 1.80997 1.12247 1.11595 1.16194 1.18609 0.89107 0.93512 0.86547 1.19837 0.97823 0.96447 1.35260 0.90991 1.26758 0.99125 0.99545 0.92232 1.69687 1.20741 1.31192 1.19259 0.85350 0.77144 0.77898 0.80249 1.18657 1.18355 1.18049 1.21412 0.99469 0.90943 1.07310 1.21348 0.94731 0.96736 0.96126 0.83959 0.92169 0.92269 0.82024 0.89713 0.90003 0.89729 0.82515 0.83782 0.84934 0.89097 0.86605 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.35 -8.34 9.81 -56.12 -0.55 -8.89 16 3 C 0.51 16.17 7.90 70.34 0.56 16.73 16 4 O -0.54 -21.18 16.13 19.95 0.32 -20.86 16 5 C -0.14 -4.31 5.87 -20.12 -0.12 -4.42 16 6 C -0.06 -1.38 9.26 22.57 0.21 -1.17 16 7 C -0.09 -1.91 5.87 -19.94 -0.12 -2.03 16 8 C -0.11 -1.27 10.00 71.24 0.71 -0.55 16 9 C -0.07 -1.80 9.06 22.55 0.20 -1.60 16 10 C -0.05 -1.79 5.87 -20.08 -0.12 -1.91 16 11 C -0.02 -0.64 5.86 -20.13 -0.12 -0.76 16 12 C -0.22 -7.90 9.37 22.52 0.21 -7.69 16 13 C -0.02 -0.92 9.74 22.47 0.22 -0.70 16 14 C -0.21 -9.61 5.95 -19.54 -0.12 -9.73 16 15 C 0.31 14.63 14.28 88.33 1.26 15.89 16 16 N -0.53 -26.08 18.54 19.00 0.35 -25.73 16 17 C 0.13 6.47 5.73 -19.90 -0.11 6.36 16 18 C -0.47 -24.40 8.58 23.39 0.20 -24.20 16 19 H 0.07 3.84 7.37 -2.91 -0.02 3.81 16 20 C 0.04 2.15 5.16 85.35 0.44 2.59 16 21 N -0.79 -39.13 10.95 21.87 0.24 -38.89 16 22 Si 0.97 38.03 29.60 68.60 2.03 40.06 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 24 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 25 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 26 C -0.17 -8.28 8.06 22.93 0.18 -8.09 16 27 C -0.07 -2.63 8.95 22.77 0.20 -2.43 16 28 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.16 2.67 7.60 -2.91 -0.02 2.65 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 34 H 0.08 0.73 8.08 -2.39 -0.02 0.72 16 35 H 0.16 3.14 6.12 -2.91 -0.02 3.13 16 36 H 0.14 3.81 6.09 -2.91 -0.02 3.79 16 37 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 38 H 0.30 13.60 8.30 -92.71 -0.77 12.83 16 39 H 0.12 5.92 4.24 -2.91 -0.01 5.91 16 40 H 0.11 4.83 5.73 -2.91 -0.02 4.81 16 Total: -1.00 -65.44 354.63 8.40 -57.05 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.10 Total: 19.29 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 4.90 Total: -22.03 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: 0.59 Total: -64.62 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.23 Total: -29.74 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -65.44 8.40 -57.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243023614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.396 kcal (2) G-P(sol) polarization free energy of solvation -65.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds