Wall clock time and date at job start Tue Mar 31 2020 13:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47071 * 2 1 4 4 C 1.50700 * 109.47356 * 239.99974 * 2 1 3 5 5 H 1.07994 * 120.00430 * 240.00564 * 4 2 1 6 6 C 1.37882 * 119.99489 * 59.99902 * 4 2 1 7 7 N 1.31510 * 120.00439 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99651 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47137 * 89.99742 * 8 6 4 10 10 H 1.48493 * 109.46866 * 209.99772 * 8 6 4 11 11 H 1.48497 * 109.47030 * 330.00093 * 8 6 4 12 12 C 1.53002 * 109.47209 * 119.99714 * 2 1 3 13 13 N 1.46495 * 109.47445 * 300.00091 * 12 2 1 14 14 C 1.39632 * 120.00208 * 179.97438 * 13 12 2 15 15 C 1.38979 * 119.95895 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.05509 * 179.97438 * 15 14 13 17 17 C 1.39378 * 119.97848 * 0.02562 * 16 15 14 18 18 C 1.48414 * 120.03773 * 179.97438 * 17 16 15 19 19 N 1.34059 * 126.67848 * 359.69323 * 18 17 16 20 20 N 1.28990 * 107.26354 * 179.83045 * 19 18 17 21 21 N 1.28727 * 108.95095 * 0.43154 * 20 19 18 22 22 H 0.97001 * 125.33811 * 179.73777 * 21 20 19 23 23 N 1.28873 * 109.32147 * 359.72475 * 21 20 19 24 24 C 1.39352 * 119.92029 * 0.02562 * 17 16 15 25 25 C 1.37970 * 119.94663 * 359.95233 * 24 17 16 26 26 Cl 1.73597 * 119.99188 * 180.02562 * 25 24 17 27 27 H 1.09001 * 109.47385 * 300.00116 * 1 2 3 28 28 H 1.09004 * 109.47487 * 59.99660 * 1 2 3 29 29 H 1.08998 * 109.47587 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47109 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47434 * 299.99736 * 3 2 1 32 32 H 1.09001 * 109.47564 * 59.99999 * 3 2 1 33 33 H 0.96998 * 119.99804 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.46761 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.46510 * 60.00228 * 12 2 1 36 36 H 0.97011 * 119.99692 * 359.97438 * 13 12 2 37 37 H 1.08005 * 119.97598 * 0.02562 * 15 14 13 38 38 H 1.08005 * 120.00866 * 179.74737 * 16 15 14 39 39 H 1.07996 * 120.03157 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8886 -0.5079 3.7136 15 6 2.6868 -1.6386 3.8402 16 6 3.0212 -2.1113 5.0915 17 6 2.5579 -1.4551 6.2305 18 6 2.9165 -1.9632 7.5781 19 7 3.6683 -3.0381 7.8547 20 7 3.7426 -3.1331 9.1389 21 7 3.0659 -2.1748 9.6689 22 1 2.9591 -2.0231 10.6210 23 7 2.5530 -1.4484 8.7361 24 6 1.7567 -0.3222 6.1025 25 6 1.4245 0.1484 4.8488 26 17 0.4270 1.5601 4.6880 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.7089 1.1614 -3.4844 34 1 3.1300 -0.7215 1.2490 35 1 1.6766 -1.7489 1.2492 36 1 0.9943 0.7583 2.3564 37 1 3.0463 -2.1469 2.9576 38 1 3.6381 -2.9924 5.1889 39 1 1.3971 0.1879 6.9839 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603134943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:13 Heat of formation + Delta-G solvation = 134.469134 kcal Electronic energy + Delta-G solvation = -23746.075404 eV Core-core repulsion = 20138.159130 eV Total energy + Delta-G solvation = -3607.916275 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.49561 -39.54551 -37.03534 -36.32690 -34.69252 -34.16518 -32.95790 -31.23370 -30.74272 -28.71081 -25.84530 -25.76662 -25.12703 -24.63529 -23.58714 -22.33582 -21.19970 -19.31800 -18.71799 -17.66415 -17.19816 -16.48542 -15.87395 -15.58268 -14.84734 -14.49567 -14.24888 -13.94967 -13.72153 -13.59941 -13.16031 -12.99084 -12.61646 -12.36256 -12.05833 -11.84541 -11.63423 -11.44881 -11.40172 -11.22625 -11.08591 -11.02207 -10.82088 -10.77482 -10.70494 -10.43053 -10.23310 -9.79082 -9.42192 -9.41196 -8.85638 -8.79761 -8.44027 -7.13714 -6.07225 -4.18501 0.80842 1.19080 1.32694 2.13576 2.30519 2.39827 3.24413 3.32098 3.34298 3.67303 3.80997 3.83389 4.19276 4.35567 4.86343 5.11693 5.19619 5.28905 5.38367 5.40582 5.56501 5.88950 6.00549 6.11038 6.13745 6.26062 6.26754 6.39438 6.48375 6.65387 6.72418 6.80340 6.90911 6.95338 7.23745 7.50477 7.53782 7.63762 7.95092 7.95314 8.08472 8.11994 8.32794 8.81747 9.47896 10.94087 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.022346 B = 0.002809 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.692270 B = 9964.524123 C =11026.159442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.059 3.941 3 C -0.132 4.132 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.126 3.874 13 N -0.713 5.713 14 C 0.264 3.736 15 C -0.197 4.197 16 C -0.014 4.014 17 C -0.100 4.100 18 C 0.244 3.756 19 N -0.276 5.276 20 N -0.055 5.055 21 N -0.233 5.233 22 H 0.473 0.527 23 N -0.308 5.308 24 C -0.014 4.014 25 C -0.133 4.133 26 Cl -0.072 7.072 27 H 0.007 0.993 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.007 0.993 33 H 0.261 0.739 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.406 0.594 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 -2.243 19.865 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 C -0.190 4.190 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.003 3.997 13 N -0.336 5.336 14 C 0.150 3.850 15 C -0.220 4.220 16 C -0.035 4.035 17 C -0.107 4.107 18 C -0.034 4.034 19 N -0.149 5.149 20 N -0.050 5.050 21 N -0.079 5.079 22 H 0.326 0.674 23 N -0.159 5.159 24 C -0.036 4.036 25 C -0.165 4.165 26 Cl -0.043 7.043 27 H 0.026 0.974 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.244 0.756 37 H 0.159 0.841 38 H 0.154 0.846 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.777 -2.501 19.870 20.106 hybrid contribution -0.297 0.403 -0.517 0.720 sum 1.480 -2.097 19.353 19.523 Atomic orbital electron populations 1.21839 0.97699 0.99233 1.00221 1.18313 0.92849 0.92781 0.90254 1.21839 0.98581 0.98344 1.00222 1.20945 1.31783 1.12170 0.89845 0.92404 1.24885 0.94806 0.94863 0.98905 1.69803 1.36458 1.22610 1.23334 0.86573 0.79285 0.79398 0.82621 1.20695 1.21255 1.19882 1.21913 0.97943 0.95928 0.83905 1.45634 1.53665 1.31916 1.02425 1.17916 0.90506 0.91251 0.85322 1.20594 1.04821 0.98394 0.98226 1.20938 0.94864 0.97461 0.90270 1.16644 1.07996 0.99898 0.86159 1.23601 0.95516 0.91082 0.93246 1.76076 1.18103 1.17345 1.03370 1.78863 1.12594 1.10284 1.03282 1.47668 1.31640 1.16733 1.11815 0.67373 1.74950 1.22455 1.21393 0.97151 1.20614 0.93790 0.93517 0.95668 1.20062 1.07305 0.95745 0.93408 1.98340 1.68590 1.39496 1.97873 0.97441 0.89566 0.95373 0.95371 0.89554 0.97448 0.92916 0.92603 0.92610 0.75592 0.84131 0.84559 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.51 -12.66 8.01 -34.44 -0.28 -12.93 16 5 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.13 9.35 55.43 0.52 -22.61 16 8 Si 0.89 20.09 29.54 -169.99 -5.02 15.06 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 12 C 0.13 2.35 3.73 -4.04 -0.02 2.33 16 13 N -0.71 -11.95 5.09 -58.58 -0.30 -12.25 16 14 C 0.26 3.99 6.65 -83.71 -0.56 3.43 16 15 C -0.20 -2.71 9.29 -39.44 -0.37 -3.07 16 16 C -0.01 -0.18 9.69 -39.29 -0.38 -0.56 16 17 C -0.10 -1.30 5.88 -104.87 -0.62 -1.91 16 18 C 0.24 3.09 7.93 -156.29 -1.24 1.85 16 19 N -0.28 -3.57 12.23 32.15 0.39 -3.18 16 20 N -0.05 -0.59 13.47 60.35 0.81 0.22 16 21 N -0.23 -1.90 7.90 60.35 0.48 -1.42 16 22 H 0.47 1.45 8.96 -340.36 -3.05 -1.60 16 23 N -0.31 -3.36 12.08 32.17 0.39 -2.97 16 24 C -0.01 -0.18 9.47 -39.27 -0.37 -0.56 16 25 C -0.13 -1.88 6.33 -39.36 -0.25 -2.13 16 26 Cl -0.07 -0.98 27.57 -51.86 -1.43 -2.41 16 27 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 28 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 32 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 33 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 34 H 0.06 1.03 7.94 -51.93 -0.41 0.62 16 35 H 0.06 1.03 7.94 -51.93 -0.41 0.62 16 36 H 0.41 6.98 4.82 -40.82 -0.20 6.78 16 37 H 0.14 1.85 6.71 -52.48 -0.35 1.50 16 38 H 0.14 1.53 7.88 -52.48 -0.41 1.12 16 39 H 0.14 1.57 7.88 -52.49 -0.41 1.16 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -27.44 337.68 -9.69 -37.13 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.98 Total: 3.32 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -3.64 Total: -15.98 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 2.29 Total: -42.21 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.43 Total: -2.41 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.44 -9.69 -37.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603134943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.602 kcal (2) G-P(sol) polarization free energy of solvation -27.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds