Wall clock time and date at job start Tue Mar 31 2020 13:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47071 * 2 1 4 4 C 1.50700 * 109.47356 * 239.99974 * 2 1 3 5 5 H 1.07994 * 120.00430 * 240.00564 * 4 2 1 6 6 C 1.37882 * 119.99489 * 59.99902 * 4 2 1 7 7 N 1.31510 * 120.00439 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99651 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47137 * 89.99742 * 8 6 4 10 10 H 1.48493 * 109.46866 * 209.99772 * 8 6 4 11 11 H 1.48497 * 109.47030 * 330.00093 * 8 6 4 12 12 C 1.53002 * 109.47209 * 119.99714 * 2 1 3 13 13 N 1.46495 * 109.47445 * 300.00091 * 12 2 1 14 14 C 1.39632 * 120.00208 * 179.97438 * 13 12 2 15 15 C 1.38979 * 119.95895 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.05509 * 179.97438 * 15 14 13 17 17 C 1.39378 * 119.97848 * 0.02562 * 16 15 14 18 18 C 1.48414 * 120.03773 * 179.97438 * 17 16 15 19 19 N 1.34059 * 126.67848 * 359.69323 * 18 17 16 20 20 N 1.28990 * 107.26354 * 179.83045 * 19 18 17 21 21 N 1.28727 * 108.95095 * 0.43154 * 20 19 18 22 22 H 0.97001 * 125.33811 * 179.73777 * 21 20 19 23 23 N 1.28873 * 109.32147 * 359.72475 * 21 20 19 24 24 C 1.39352 * 119.92029 * 0.02562 * 17 16 15 25 25 C 1.37970 * 119.94663 * 359.95233 * 24 17 16 26 26 Cl 1.73597 * 119.99188 * 180.02562 * 25 24 17 27 27 H 1.09001 * 109.47385 * 300.00116 * 1 2 3 28 28 H 1.09004 * 109.47487 * 59.99660 * 1 2 3 29 29 H 1.08998 * 109.47587 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47109 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47434 * 299.99736 * 3 2 1 32 32 H 1.09001 * 109.47564 * 59.99999 * 3 2 1 33 33 H 0.96998 * 119.99804 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.46761 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.46510 * 60.00228 * 12 2 1 36 36 H 0.97011 * 119.99692 * 359.97438 * 13 12 2 37 37 H 1.08005 * 119.97598 * 0.02562 * 15 14 13 38 38 H 1.08005 * 120.00866 * 179.74737 * 16 15 14 39 39 H 1.07996 * 120.03157 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8886 -0.5079 3.7136 15 6 2.6868 -1.6386 3.8402 16 6 3.0212 -2.1113 5.0915 17 6 2.5579 -1.4551 6.2305 18 6 2.9165 -1.9632 7.5781 19 7 3.6683 -3.0381 7.8547 20 7 3.7426 -3.1331 9.1389 21 7 3.0659 -2.1748 9.6689 22 1 2.9591 -2.0231 10.6210 23 7 2.5530 -1.4484 8.7361 24 6 1.7567 -0.3222 6.1025 25 6 1.4245 0.1484 4.8488 26 17 0.4270 1.5601 4.6880 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.7089 1.1614 -3.4844 34 1 3.1300 -0.7215 1.2490 35 1 1.6766 -1.7489 1.2492 36 1 0.9943 0.7583 2.3564 37 1 3.0463 -2.1469 2.9576 38 1 3.6381 -2.9924 5.1889 39 1 1.3971 0.1879 6.9839 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603134943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:12 Heat of formation + Delta-G solvation = 119.463371 kcal Electronic energy + Delta-G solvation = -23746.726103 eV Core-core repulsion = 20138.159130 eV Total energy + Delta-G solvation = -3608.566973 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.35349 -40.66416 -38.53057 -37.39643 -35.96762 -35.13948 -34.08414 -32.87072 -31.79021 -29.90110 -27.56539 -27.47722 -26.67946 -25.56905 -24.65676 -23.42131 -22.28504 -20.40872 -20.12716 -18.89866 -18.04300 -17.71897 -17.46103 -16.83394 -16.49633 -15.63799 -15.55917 -15.06371 -14.94832 -14.74737 -14.54065 -14.45598 -14.02949 -13.59588 -13.29845 -13.09567 -13.07100 -12.81975 -12.77885 -12.56277 -12.37172 -12.35636 -12.27207 -12.09929 -12.01527 -11.87370 -11.84101 -11.43017 -11.13517 -10.67562 -10.66233 -10.35296 -9.83319 -8.31468 -7.99235 -6.15452 -0.13296 0.27379 0.28949 1.20657 1.39958 1.45369 1.48816 1.52922 1.55971 2.41005 2.57782 2.78760 2.81300 3.25190 3.28319 3.81895 4.12611 4.30100 4.31891 4.36973 4.50439 4.57826 4.59438 4.72813 4.88266 4.97725 5.06327 5.06714 5.14765 5.21478 5.25014 5.43373 5.46808 5.67169 5.67456 5.70164 5.70362 6.13861 6.16979 6.29532 6.45192 6.73473 6.91995 7.21526 7.52986 8.99851 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.022346 B = 0.002809 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.692270 B = 9964.524123 C =11026.159442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.522 4.522 5 H 0.056 0.944 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.945 3.055 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.270 1.270 12 C 0.143 3.857 13 N -0.722 5.722 14 C 0.247 3.753 15 C -0.197 4.197 16 C -0.011 4.011 17 C -0.095 4.095 18 C 0.229 3.771 19 N -0.298 5.298 20 N -0.058 5.058 21 N -0.203 5.203 22 H 0.493 0.507 23 N -0.306 5.306 24 C -0.012 4.012 25 C -0.136 4.136 26 Cl -0.071 7.071 27 H 0.024 0.976 28 H 0.058 0.942 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.058 0.942 32 H 0.024 0.976 33 H 0.258 0.742 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.402 0.598 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.092 -2.940 21.915 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.560 4.560 5 H 0.074 0.926 6 C -0.175 4.175 7 N -0.543 5.543 8 Si 0.772 3.228 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.194 1.194 12 C 0.020 3.980 13 N -0.347 5.347 14 C 0.135 3.865 15 C -0.221 4.221 16 C -0.032 4.032 17 C -0.101 4.101 18 C -0.050 4.050 19 N -0.170 5.170 20 N -0.053 5.053 21 N -0.053 5.053 22 H 0.352 0.648 23 N -0.158 5.158 24 C -0.033 4.033 25 C -0.167 4.167 26 Cl -0.042 7.042 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.240 0.760 37 H 0.162 0.838 38 H 0.168 0.832 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.290 -3.218 21.978 22.330 hybrid contribution -0.441 0.603 -0.924 1.189 sum 1.848 -2.615 21.054 21.296 Atomic orbital electron populations 1.21681 0.97901 0.98708 0.99680 1.18314 0.92675 0.92766 0.91119 1.21680 0.98144 0.98461 0.99679 1.21304 1.31451 1.12178 0.91089 0.92557 1.25512 0.95238 0.95540 1.01245 1.69940 1.37341 1.23571 1.23442 0.85751 0.78855 0.78310 0.79839 1.20667 1.21535 1.19421 1.21504 0.97717 0.95470 0.83324 1.45359 1.54754 1.32156 1.02423 1.18051 0.91520 0.92065 0.84823 1.20694 1.04478 0.98018 0.98867 1.21072 0.94641 0.97722 0.89759 1.16780 1.07155 0.99523 0.86637 1.23550 0.96368 0.91581 0.93489 1.76062 1.18830 1.17849 1.04292 1.78817 1.12958 1.10784 1.02764 1.47735 1.29688 1.15258 1.12643 0.64814 1.74911 1.22278 1.21495 0.97123 1.20724 0.93523 0.93471 0.95616 1.20147 1.07274 0.95763 0.93551 1.98339 1.68565 1.39441 1.97888 0.95659 0.92310 0.95786 0.95772 0.92299 0.95668 0.93270 0.92623 0.92612 0.76031 0.83804 0.83192 0.83278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.08 71.98 0.58 -4.84 16 2 C 0.05 2.29 0.50 -52.93 -0.03 2.26 16 3 C -0.12 -5.42 8.08 71.98 0.58 -4.84 16 4 C -0.52 -25.99 8.01 25.60 0.21 -25.78 16 5 H 0.06 2.76 7.74 -2.91 -0.02 2.73 16 6 C 0.02 1.23 5.15 84.66 0.44 1.67 16 7 N -0.90 -48.10 9.35 21.45 0.20 -47.90 16 8 Si 0.95 41.35 29.54 68.60 2.03 43.37 16 9 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 12 C 0.14 5.25 3.73 86.38 0.32 5.58 16 13 N -0.72 -23.56 5.09 -339.24 -1.73 -25.28 16 14 C 0.25 7.15 6.65 38.28 0.25 7.41 16 15 C -0.20 -5.16 9.29 22.36 0.21 -4.95 16 16 C -0.01 -0.26 9.69 22.46 0.22 -0.04 16 17 C -0.09 -2.26 5.88 -20.02 -0.12 -2.38 16 18 C 0.23 5.30 7.93 137.36 1.09 6.39 16 19 N -0.30 -7.11 12.23 -52.20 -0.64 -7.75 16 20 N -0.06 -1.12 13.47 37.02 0.50 -0.62 16 21 N -0.20 -2.73 7.90 37.02 0.29 -2.44 16 22 H 0.49 1.50 8.96 -347.53 -3.12 -1.62 16 23 N -0.31 -5.87 12.08 -52.15 -0.63 -6.49 16 24 C -0.01 -0.28 9.47 22.47 0.21 -0.07 16 25 C -0.14 -3.63 6.33 22.41 0.14 -3.49 16 26 Cl -0.07 -1.86 27.57 -2.72 -0.08 -1.94 16 27 H 0.02 0.99 6.86 -2.39 -0.02 0.98 16 28 H 0.06 2.95 6.07 -2.38 -0.01 2.93 16 29 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 2.95 6.07 -2.39 -0.01 2.94 16 32 H 0.02 0.99 6.86 -2.39 -0.02 0.97 16 33 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 34 H 0.06 2.02 7.94 -2.39 -0.02 2.00 16 35 H 0.06 2.02 7.94 -2.39 -0.02 2.00 16 36 H 0.40 13.49 4.82 -92.70 -0.45 13.05 16 37 H 0.14 3.62 6.71 -2.91 -0.02 3.60 16 38 H 0.15 3.09 7.88 -2.91 -0.02 3.07 16 39 H 0.15 3.10 7.88 -2.91 -0.02 3.08 16 Total: -1.00 -57.68 337.68 1.62 -56.06 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -2.44 Total: 16.08 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 4.11 Total: -23.10 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -2.00 Total: -90.49 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.94 kcal Total: -57.68 1.62 -56.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603134943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.524 kcal (2) G-P(sol) polarization free energy of solvation -57.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds