Wall clock time and date at job start Tue Mar 31 2020 12:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86799 * 119.99750 * 2 1 4 4 H 1.48495 * 109.47641 * 274.99179 * 3 2 1 5 5 H 1.48507 * 109.46733 * 34.99144 * 3 2 1 6 6 H 1.48499 * 109.47333 * 154.98497 * 3 2 1 7 7 C 1.39905 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00217 * 147.60045 * 7 2 1 9 9 C 1.41153 * 119.99637 * 327.60331 * 7 2 1 10 10 C 1.40870 * 120.16276 * 157.94871 * 9 7 2 11 11 C 1.36367 * 119.82846 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.16971 * 0.02562 * 11 10 9 13 13 N 1.39237 * 119.83344 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00203 * 37.76155 * 13 12 11 15 15 O 1.21282 * 120.00140 * 356.69863 * 14 13 12 16 16 C 1.50701 * 119.99890 * 176.70517 * 14 13 12 17 17 C 1.50707 * 109.47119 * 179.97438 * 16 14 13 18 18 C 1.35099 * 125.68670 * 124.99649 * 17 16 14 19 19 N 1.36835 * 107.18106 * 180.02562 * 18 17 16 20 20 C 1.36480 * 132.57264 * 179.97438 * 19 18 17 21 21 C 1.34956 * 120.61205 * 179.97438 * 20 19 18 22 22 C 1.40477 * 120.29860 * 0.03923 * 21 20 19 23 23 C 1.36025 * 119.69329 * 359.97438 * 22 21 20 24 24 C 1.37084 * 106.99736 * 359.97438 * 19 18 17 25 25 N 1.32560 * 108.03500 * 359.97438 * 24 19 18 26 26 C 1.39480 * 120.33060 * 0.25205 * 12 11 10 27 27 C 1.36373 * 120.16689 * 359.44966 * 26 12 11 28 28 H 0.96995 * 120.00418 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.08251 * 359.97438 * 10 9 7 30 30 H 1.07999 * 119.91728 * 179.97438 * 11 10 9 31 31 H 0.96999 * 119.99790 * 217.76041 * 13 12 11 32 32 H 1.08995 * 109.47792 * 59.99661 * 16 14 13 33 33 H 1.09003 * 109.46680 * 299.99018 * 16 14 13 34 34 H 1.08003 * 126.41318 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.70014 * 0.02562 * 20 19 18 36 36 H 1.07996 * 119.85007 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.15509 * 180.25800 * 22 21 20 38 38 H 1.07997 * 120.33394 * 180.02562 * 23 22 21 39 39 H 1.07999 * 119.91192 * 179.72535 * 26 12 11 40 40 H 1.08001 * 120.08325 * 180.25202 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3847 2.1075 -1.3947 5 1 1.4967 2.6199 0.8029 6 1 3.5889 1.4122 0.5920 7 6 2.0083 -1.2116 -0.0005 8 1 2.9623 -1.2841 -0.5017 9 6 1.4673 -2.3391 0.6539 10 6 1.8855 -3.6351 0.2933 11 6 1.3580 -4.7197 0.9297 12 6 0.4063 -4.5483 1.9350 13 7 -0.1281 -5.6607 2.5798 14 6 0.6571 -6.7201 2.8583 15 8 1.8140 -6.7297 2.4944 16 6 0.0976 -7.8927 3.6218 17 6 1.1714 -8.9352 3.7991 18 6 1.5733 -9.4601 4.9773 19 7 2.5614 -10.3653 4.7004 20 6 3.3170 -11.1789 5.4940 21 6 4.2453 -11.9963 4.9540 22 6 4.4467 -12.0194 3.5639 23 6 3.7006 -11.2134 2.7615 24 6 2.7348 -10.3659 3.3406 25 7 1.8833 -9.4947 2.8179 26 6 -0.0169 -3.2686 2.2936 27 6 0.5061 -2.1741 1.6703 28 1 -0.4850 0.8400 0.0004 29 1 2.6213 -3.7694 -0.4857 30 1 1.6772 -5.7139 0.6541 31 1 -1.0655 -5.6731 2.8287 32 1 -0.7372 -8.3221 3.0679 33 1 -0.2490 -7.5577 4.5994 34 1 1.1871 -9.2117 5.9549 35 1 3.1703 -11.1692 6.5639 36 1 4.8361 -12.6353 5.5935 37 1 5.1873 -12.6774 3.1339 38 1 3.8465 -11.2231 1.6915 39 1 -0.7573 -3.1439 3.0698 40 1 0.1804 -1.1836 1.9518 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032413607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:23 Heat of formation + Delta-G solvation = 79.763355 kcal Electronic energy + Delta-G solvation = -24698.381119 eV Core-core repulsion = 21058.232722 eV Total energy + Delta-G solvation = -3640.148397 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.122 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.86305 -39.45646 -37.67899 -36.98153 -34.33750 -33.73361 -32.97077 -31.93127 -29.60667 -29.41759 -28.91839 -27.70585 -24.83233 -23.48037 -22.79907 -21.85288 -21.04834 -20.36123 -19.41326 -17.93960 -17.33786 -17.00527 -16.70711 -16.25878 -15.74826 -15.72310 -15.15848 -14.94181 -14.59758 -14.16225 -13.96001 -13.52680 -13.27179 -12.91175 -12.63871 -12.58355 -12.17567 -12.00471 -11.95105 -11.87141 -11.67223 -11.26699 -11.13705 -11.10432 -10.89339 -10.47563 -10.08177 -10.00040 -9.64697 -9.32085 -8.99552 -8.75098 -8.58670 -7.94910 -7.47216 -7.07112 -6.81825 -4.20833 0.58712 1.14460 2.46719 2.67474 2.74011 3.03349 3.08078 3.16805 3.18076 3.41449 3.50348 3.93143 3.95280 4.07008 4.24957 4.51917 4.56273 4.62297 4.87212 5.02870 5.12935 5.24236 5.42876 5.45946 5.60928 5.69011 5.75759 5.86023 5.97915 6.25600 6.32025 6.51114 6.54828 6.86269 6.97040 7.05158 7.06911 7.23059 7.37541 7.64389 7.79094 7.90841 7.99191 8.09548 8.33169 8.40885 8.61966 8.90232 8.91564 9.10382 10.07742 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.027392 B = 0.002273 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.957533 B =12317.633919 C =12836.843897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.088 3.912 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.467 4.467 8 H 0.081 0.919 9 C 0.112 3.888 10 C -0.223 4.223 11 C -0.066 4.066 12 C -0.016 4.016 13 N -0.655 5.655 14 C 0.500 3.500 15 O -0.512 6.512 16 C -0.060 4.060 17 C 0.086 3.914 18 C -0.097 4.097 19 N -0.363 5.363 20 C 0.055 3.945 21 C -0.146 4.146 22 C -0.111 4.111 23 C -0.071 4.071 24 C 0.218 3.782 25 N -0.457 5.457 26 C -0.104 4.104 27 C -0.172 4.172 28 H 0.282 0.718 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.393 0.607 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.182 0.818 35 H 0.160 0.840 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.089 0.911 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 -19.808 12.165 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.495 4.495 8 H 0.099 0.901 9 C 0.109 3.891 10 C -0.243 4.243 11 C -0.086 4.086 12 C -0.108 4.108 13 N -0.299 5.299 14 C 0.286 3.714 15 O -0.387 6.387 16 C -0.102 4.102 17 C -0.048 4.048 18 C -0.228 4.228 19 N -0.036 5.036 20 C -0.068 4.068 21 C -0.167 4.167 22 C -0.135 4.135 23 C -0.091 4.091 24 C -0.025 4.025 25 N -0.176 5.176 26 C -0.124 4.124 27 C -0.192 4.192 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.226 0.774 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.199 0.801 35 H 0.177 0.823 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.168 0.832 39 H 0.107 0.893 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.530 -19.477 11.116 22.478 hybrid contribution -0.121 0.693 1.115 1.318 sum 1.409 -18.784 12.231 22.460 Atomic orbital electron populations 1.69951 1.08047 1.29746 1.31666 1.25926 0.94348 1.01442 0.91590 0.86529 0.81542 0.80940 0.79160 1.19498 1.19932 1.18145 1.19489 1.05422 0.93788 1.30777 0.90096 1.17588 0.89771 0.91829 0.89905 1.20608 1.07039 0.92358 1.04342 1.20341 0.96388 0.98077 0.93762 1.17051 1.07020 0.84866 1.01856 1.42920 1.11937 1.16166 1.58834 1.20212 0.86697 0.83623 0.80910 1.90730 1.17316 1.79226 1.51432 1.20010 0.96027 0.91823 1.02305 1.20117 0.98259 0.97984 0.88461 1.22304 0.98610 1.00662 1.01177 1.42800 1.24868 1.26838 1.09070 1.21569 0.94549 0.93727 0.96928 1.20767 0.99233 1.00664 0.96085 1.20990 0.99945 0.99519 0.93067 1.20323 0.93315 0.94128 1.01335 1.21037 1.01066 1.00709 0.79684 1.70691 1.07461 1.08742 1.30676 1.20169 1.00809 0.91639 0.99788 1.20607 1.02611 0.96611 0.99363 0.90690 0.88836 0.87847 0.77393 0.87572 0.87643 0.80086 0.82259 0.83447 0.84185 0.83222 0.89316 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.85 11.78 55.55 0.65 -19.20 16 2 C 0.09 2.23 4.77 -17.34 -0.08 2.15 16 3 Si 0.89 18.61 29.66 -169.99 -5.04 13.57 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.47 -12.69 8.94 -37.85 -0.34 -13.03 16 8 H 0.08 2.14 8.02 -52.49 -0.42 1.72 16 9 C 0.11 3.09 5.57 -106.80 -0.60 2.49 16 10 C -0.22 -5.96 9.74 -39.26 -0.38 -6.34 16 11 C -0.07 -1.67 8.59 -39.79 -0.34 -2.02 16 12 C -0.02 -0.37 6.25 -83.57 -0.52 -0.89 16 13 N -0.65 -11.95 5.30 -9.74 -0.05 -12.00 16 14 C 0.50 9.22 7.63 -10.99 -0.08 9.13 16 15 O -0.51 -11.99 13.18 5.56 0.07 -11.91 16 16 C -0.06 -0.78 6.26 -29.03 -0.18 -0.96 16 17 C 0.09 1.28 5.85 -82.97 -0.48 0.80 16 18 C -0.10 -1.16 11.63 -16.44 -0.19 -1.36 16 19 N -0.36 -4.42 2.94 -62.66 -0.18 -4.61 16 20 C 0.05 0.45 10.95 -16.65 -0.18 0.27 16 21 C -0.15 -1.01 9.99 -39.90 -0.40 -1.41 16 22 C -0.11 -0.89 10.07 -39.53 -0.40 -1.28 16 23 C -0.07 -0.80 10.11 -39.36 -0.40 -1.19 16 24 C 0.22 3.20 7.81 -156.04 -1.22 1.98 16 25 N -0.46 -7.99 10.67 -9.00 -0.10 -8.09 16 26 C -0.10 -2.44 9.90 -39.79 -0.39 -2.83 16 27 C -0.17 -4.52 8.74 -39.26 -0.34 -4.86 16 28 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 29 H 0.09 2.39 8.06 -52.49 -0.42 1.96 16 30 H 0.10 2.66 6.45 -52.49 -0.34 2.32 16 31 H 0.39 5.51 8.82 -40.82 -0.36 5.15 16 32 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.11 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.18 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.11 2.81 6.52 -52.49 -0.34 2.47 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -35.99 348.39 -10.33 -46.33 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.40 Total: 10.00 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -6.54 Total: -19.35 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.32 Total: -43.89 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.07 Total: -11.91 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.04 Total: 13.57 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.99 -10.33 -46.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032413607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.090 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds