Wall clock time and date at job start Tue Mar 31 2020 12:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86799 * 119.99750 * 2 1 4 4 H 1.48495 * 109.47641 * 274.99179 * 3 2 1 5 5 H 1.48507 * 109.46733 * 34.99144 * 3 2 1 6 6 H 1.48499 * 109.47333 * 154.98497 * 3 2 1 7 7 C 1.39905 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00217 * 147.60045 * 7 2 1 9 9 C 1.41153 * 119.99637 * 327.60331 * 7 2 1 10 10 C 1.40870 * 120.16276 * 157.94871 * 9 7 2 11 11 C 1.36367 * 119.82846 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.16971 * 0.02562 * 11 10 9 13 13 N 1.39237 * 119.83344 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00203 * 37.76155 * 13 12 11 15 15 O 1.21282 * 120.00140 * 356.69863 * 14 13 12 16 16 C 1.50701 * 119.99890 * 176.70517 * 14 13 12 17 17 C 1.50707 * 109.47119 * 179.97438 * 16 14 13 18 18 C 1.35099 * 125.68670 * 124.99649 * 17 16 14 19 19 N 1.36835 * 107.18106 * 180.02562 * 18 17 16 20 20 C 1.36480 * 132.57264 * 179.97438 * 19 18 17 21 21 C 1.34956 * 120.61205 * 179.97438 * 20 19 18 22 22 C 1.40477 * 120.29860 * 0.03923 * 21 20 19 23 23 C 1.36025 * 119.69329 * 359.97438 * 22 21 20 24 24 C 1.37084 * 106.99736 * 359.97438 * 19 18 17 25 25 N 1.32560 * 108.03500 * 359.97438 * 24 19 18 26 26 C 1.39480 * 120.33060 * 0.25205 * 12 11 10 27 27 C 1.36373 * 120.16689 * 359.44966 * 26 12 11 28 28 H 0.96995 * 120.00418 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.08251 * 359.97438 * 10 9 7 30 30 H 1.07999 * 119.91728 * 179.97438 * 11 10 9 31 31 H 0.96999 * 119.99790 * 217.76041 * 13 12 11 32 32 H 1.08995 * 109.47792 * 59.99661 * 16 14 13 33 33 H 1.09003 * 109.46680 * 299.99018 * 16 14 13 34 34 H 1.08003 * 126.41318 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.70014 * 0.02562 * 20 19 18 36 36 H 1.07996 * 119.85007 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.15509 * 180.25800 * 22 21 20 38 38 H 1.07997 * 120.33394 * 180.02562 * 23 22 21 39 39 H 1.07999 * 119.91192 * 179.72535 * 26 12 11 40 40 H 1.08001 * 120.08325 * 180.25202 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3847 2.1075 -1.3947 5 1 1.4967 2.6199 0.8029 6 1 3.5889 1.4122 0.5920 7 6 2.0083 -1.2116 -0.0005 8 1 2.9623 -1.2841 -0.5017 9 6 1.4673 -2.3391 0.6539 10 6 1.8855 -3.6351 0.2933 11 6 1.3580 -4.7197 0.9297 12 6 0.4063 -4.5483 1.9350 13 7 -0.1281 -5.6607 2.5798 14 6 0.6571 -6.7201 2.8583 15 8 1.8140 -6.7297 2.4944 16 6 0.0976 -7.8927 3.6218 17 6 1.1714 -8.9352 3.7991 18 6 1.5733 -9.4601 4.9773 19 7 2.5614 -10.3653 4.7004 20 6 3.3170 -11.1789 5.4940 21 6 4.2453 -11.9963 4.9540 22 6 4.4467 -12.0194 3.5639 23 6 3.7006 -11.2134 2.7615 24 6 2.7348 -10.3659 3.3406 25 7 1.8833 -9.4947 2.8179 26 6 -0.0169 -3.2686 2.2936 27 6 0.5061 -2.1741 1.6703 28 1 -0.4850 0.8400 0.0004 29 1 2.6213 -3.7694 -0.4857 30 1 1.6772 -5.7139 0.6541 31 1 -1.0655 -5.6731 2.8287 32 1 -0.7372 -8.3221 3.0679 33 1 -0.2490 -7.5577 4.5994 34 1 1.1871 -9.2117 5.9549 35 1 3.1703 -11.1692 6.5639 36 1 4.8361 -12.6353 5.5935 37 1 5.1873 -12.6774 3.1339 38 1 3.8465 -11.2231 1.6915 39 1 -0.7573 -3.1439 3.0698 40 1 0.1804 -1.1836 1.9518 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032413607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:21 Heat of formation + Delta-G solvation = 57.536111 kcal Electronic energy + Delta-G solvation = -24699.344964 eV Core-core repulsion = 21058.232722 eV Total energy + Delta-G solvation = -3641.112242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.122 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.70627 -41.04100 -39.10668 -38.20637 -36.13238 -34.76830 -34.55453 -32.96837 -31.46825 -30.94222 -30.10837 -28.77332 -26.62927 -24.32736 -23.60803 -23.50442 -22.74965 -21.84003 -20.84693 -19.31445 -18.80045 -18.17459 -17.90282 -17.54471 -17.03151 -16.73445 -16.49403 -16.19686 -15.77970 -15.44993 -15.15341 -15.00675 -14.84058 -14.41145 -13.98680 -13.96206 -13.78790 -13.54894 -13.23870 -12.99139 -12.83553 -12.67500 -12.58374 -12.44212 -12.31928 -11.96259 -11.89889 -11.57220 -11.12448 -10.96850 -10.68647 -10.41431 -9.63134 -9.48091 -8.99627 -8.76355 -8.71516 -6.23460 -0.11107 0.37537 0.84343 1.12746 1.36801 1.43142 1.54902 1.70416 1.84599 1.93361 2.19899 2.51765 2.64334 2.69369 3.26407 3.52070 3.69692 3.85966 3.96454 4.13047 4.22202 4.30907 4.38367 4.41285 4.49414 4.56469 4.60178 4.86582 4.90026 4.99029 5.10869 5.16424 5.17491 5.29395 5.30607 5.47154 5.62099 5.64268 5.66572 5.89859 6.03110 6.12051 6.21746 6.36364 6.61490 6.84376 6.88543 6.99721 7.00837 7.56053 8.20772 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.027392 B = 0.002273 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.957533 B =12317.633919 C =12836.843897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.052 3.948 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.258 1.258 6 H -0.263 1.263 7 C -0.507 4.507 8 H 0.072 0.928 9 C 0.083 3.917 10 C -0.249 4.249 11 C -0.079 4.079 12 C -0.002 4.002 13 N -0.646 5.646 14 C 0.497 3.503 15 O -0.567 6.567 16 C -0.045 4.045 17 C 0.044 3.956 18 C -0.090 4.090 19 N -0.369 5.369 20 C 0.044 3.956 21 C -0.142 4.142 22 C -0.086 4.086 23 C -0.118 4.118 24 C 0.192 3.808 25 N -0.524 5.524 26 C -0.099 4.099 27 C -0.189 4.189 28 H 0.295 0.705 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.418 0.582 32 H 0.128 0.872 33 H 0.153 0.847 34 H 0.223 0.777 35 H 0.200 0.800 36 H 0.192 0.808 37 H 0.174 0.826 38 H 0.144 0.856 39 H 0.129 0.871 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 -20.892 15.579 26.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.168 4.168 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.182 1.182 6 H -0.187 1.187 7 C -0.535 4.535 8 H 0.090 0.910 9 C 0.080 3.920 10 C -0.269 4.269 11 C -0.099 4.099 12 C -0.095 4.095 13 N -0.292 5.292 14 C 0.285 3.715 15 O -0.445 6.445 16 C -0.085 4.085 17 C -0.088 4.088 18 C -0.221 4.221 19 N -0.040 5.040 20 C -0.077 4.077 21 C -0.162 4.162 22 C -0.109 4.109 23 C -0.138 4.138 24 C -0.052 4.052 25 N -0.244 5.244 26 C -0.119 4.119 27 C -0.209 4.209 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.255 0.745 32 H 0.146 0.854 33 H 0.170 0.830 34 H 0.240 0.760 35 H 0.217 0.783 36 H 0.209 0.791 37 H 0.191 0.809 38 H 0.162 0.838 39 H 0.146 0.854 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.085 -20.593 14.553 25.240 hybrid contribution 0.061 0.777 0.116 0.788 sum 1.146 -19.816 14.669 24.681 Atomic orbital electron populations 1.69938 1.09333 1.31499 1.31371 1.26731 0.95123 1.04411 0.90503 0.85357 0.79568 0.76091 0.79709 1.18386 1.18176 1.18729 1.19677 1.05754 0.95410 1.32645 0.91014 1.17895 0.90902 0.92148 0.91017 1.20703 1.07986 0.93013 1.05163 1.20385 0.97548 0.97060 0.94908 1.17122 1.05349 0.86637 1.00436 1.42858 1.13302 1.14856 1.58196 1.21285 0.85958 0.84312 0.79946 1.90716 1.20043 1.80291 1.53468 1.20064 0.95808 0.88794 1.03873 1.20558 0.99549 0.99395 0.89324 1.22864 0.97783 0.99639 1.01795 1.43038 1.25164 1.27245 1.08587 1.22440 0.93945 0.92792 0.98550 1.21381 0.98684 1.00221 0.95925 1.21503 0.98337 0.97429 0.93670 1.20523 0.95087 0.96321 1.01866 1.21427 1.01505 1.01015 0.81270 1.70573 1.09764 1.11053 1.33044 1.20471 1.00825 0.90730 0.99877 1.20667 1.03141 0.97323 0.99762 0.89408 0.89575 0.88980 0.74501 0.85418 0.82967 0.76041 0.78343 0.79059 0.80887 0.83848 0.85351 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.49 11.78 21.82 0.26 -41.23 16 2 C 0.05 2.66 4.77 85.24 0.41 3.06 16 3 Si 0.97 38.46 29.66 68.60 2.03 40.50 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 5 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.51 -28.85 8.94 23.39 0.21 -28.64 16 8 H 0.07 4.04 8.02 -2.91 -0.02 4.01 16 9 C 0.08 4.80 5.57 -21.28 -0.12 4.69 16 10 C -0.25 -14.13 9.74 22.48 0.22 -13.91 16 11 C -0.08 -4.21 8.59 22.13 0.19 -4.02 16 12 C 0.00 -0.10 6.25 38.57 0.24 0.14 16 13 N -0.65 -22.86 5.30 -303.11 -1.61 -24.47 16 14 C 0.50 18.20 7.63 87.66 0.67 18.87 16 15 O -0.57 -27.61 13.18 -3.03 -0.04 -27.65 16 16 C -0.05 -1.08 6.26 29.10 0.18 -0.90 16 17 C 0.04 1.32 5.85 41.58 0.24 1.56 16 18 C -0.09 -2.00 11.63 83.19 0.97 -1.03 16 19 N -0.37 -8.46 2.94 -352.16 -1.04 -9.49 16 20 C 0.04 0.58 10.95 83.21 0.91 1.49 16 21 C -0.14 -1.41 9.99 22.06 0.22 -1.19 16 22 C -0.09 -1.18 10.07 22.30 0.22 -0.96 16 23 C -0.12 -2.74 10.11 22.42 0.23 -2.51 16 24 C 0.19 5.79 7.81 134.10 1.05 6.84 16 25 N -0.52 -19.27 10.67 -182.40 -1.95 -21.22 16 26 C -0.10 -4.60 9.90 22.13 0.22 -4.38 16 27 C -0.19 -10.13 8.74 22.48 0.20 -9.93 16 28 H 0.30 13.53 8.30 -92.71 -0.77 12.76 16 29 H 0.09 4.80 8.06 -2.91 -0.02 4.78 16 30 H 0.09 5.06 6.45 -2.91 -0.02 5.05 16 31 H 0.42 10.63 8.82 -92.71 -0.82 9.81 16 32 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.15 2.14 8.10 -2.39 -0.02 2.12 16 34 H 0.22 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 36 H 0.19 0.21 8.06 -2.91 -0.02 0.19 16 37 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 38 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 39 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.10 5.43 6.52 -2.91 -0.02 5.41 16 Total: -1.00 -86.94 348.39 4.19 -82.76 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.27 Total: 31.65 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: 6.25 Total: -30.84 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -4.33 Total: -96.41 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.04 Total: -27.65 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.50 kcal Total: -86.94 4.19 -82.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032413607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.294 kcal (2) G-P(sol) polarization free energy of solvation -86.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds