Wall clock time and date at job start Tue Mar 31 2020 12:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34998 * 127.27442 * 2 1 4 4 C 1.39487 * 111.68548 * 179.97438 * 3 2 1 5 5 C 1.47696 * 122.10194 * 179.97438 * 4 3 2 6 6 O 1.21576 * 120.00052 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99698 * 179.97438 * 5 4 3 8 8 C 1.47172 * 136.00174 * 359.63966 * 7 5 4 9 9 C 1.52649 * 87.96898 * 206.71555 * 8 7 5 10 10 C 1.47156 * 135.99925 * 180.02562 * 7 5 4 11 11 C 1.52549 * 113.89804 * 88.16985 * 9 8 7 12 12 C 1.53353 * 109.13272 * 190.30450 * 11 9 8 13 13 N 1.46880 * 108.74822 * 307.76123 * 12 11 9 14 14 C 1.36939 * 120.46291 * 235.59881 * 13 12 11 15 15 H 1.08001 * 119.99560 * 28.47412 * 14 13 12 16 16 C 1.38814 * 120.00216 * 208.47025 * 14 13 12 17 17 N 1.31613 * 120.00023 * 17.65340 * 16 14 13 18 18 Si 1.86801 * 119.99649 * 197.64961 * 16 14 13 19 19 H 1.48495 * 109.46892 * 90.00546 * 18 16 14 20 20 H 1.48507 * 109.46695 * 210.00064 * 18 16 14 21 21 H 1.48493 * 109.47353 * 329.99831 * 18 16 14 22 22 C 1.46892 * 119.07557 * 55.62620 * 13 12 11 23 23 C 1.52555 * 114.25711 * 220.76324 * 9 8 7 24 24 N 1.30602 * 115.79168 * 0.24805 * 4 3 2 25 25 S 1.56140 * 109.79985 * 359.60879 * 24 4 3 26 26 H 1.08998 * 109.47320 * 90.00695 * 1 2 3 27 27 H 1.08998 * 109.46974 * 210.00211 * 1 2 3 28 28 H 1.08998 * 109.47294 * 330.00143 * 1 2 3 29 29 H 1.08007 * 124.15860 * 359.92478 * 3 2 1 30 30 H 1.08999 * 113.48456 * 321.40232 * 8 7 5 31 31 H 1.08995 * 113.48979 * 91.91401 * 8 7 5 32 32 H 1.09005 * 113.48866 * 268.08514 * 10 7 5 33 33 H 1.09004 * 113.49100 * 38.59110 * 10 7 5 34 34 H 1.09001 * 109.53120 * 310.20316 * 11 9 8 35 35 H 1.09003 * 109.52684 * 70.41009 * 11 9 8 36 36 H 1.09000 * 109.58975 * 187.97730 * 12 11 9 37 37 H 1.09002 * 109.59124 * 67.53954 * 12 11 9 38 38 H 0.96997 * 120.00374 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.59330 * 184.58859 * 22 13 12 40 40 H 1.08998 * 109.59750 * 64.14314 * 22 13 12 41 41 H 1.09002 * 109.52752 * 289.75011 * 23 9 8 42 42 H 1.08993 * 109.52801 * 49.88994 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0742 0.0000 4 6 3.6681 0.6994 0.0006 5 6 4.7604 1.6936 0.0001 6 8 4.5012 2.8814 -0.0012 7 7 6.0444 1.2840 0.0013 8 6 6.7423 -0.0117 0.0094 9 6 7.9173 0.6869 0.6887 10 6 7.3635 1.9361 0.0017 11 6 7.8206 0.7198 2.2108 12 6 8.9022 1.6563 2.7630 13 7 10.2008 1.2600 2.2026 14 6 11.2508 0.9596 3.0287 15 1 11.0648 0.5652 4.0168 16 6 12.5542 1.1620 2.5961 17 7 12.7914 1.9458 1.5659 18 14 13.9714 0.3217 3.4764 19 1 14.2315 -0.9983 2.8480 20 1 15.1883 1.1669 3.3743 21 1 13.6213 0.1289 4.9065 22 6 10.3576 1.1909 0.7437 23 6 9.2867 0.2507 0.1770 24 7 3.8995 -0.5860 -0.0041 25 16 2.5473 -1.3668 0.0009 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.9806 2.0981 -0.0012 30 1 6.2612 -0.7603 0.6390 31 1 6.9763 -0.3854 -0.9874 32 1 7.7685 2.0981 -0.9973 33 1 7.4063 2.8295 0.6248 34 1 6.8370 1.0854 2.5056 35 1 7.9711 -0.2844 2.6072 36 1 8.9336 1.5776 3.8497 37 1 8.6780 2.6834 2.4751 38 1 13.7021 2.0870 1.2633 39 1 11.3478 0.8057 0.5004 40 1 10.2345 2.1855 0.3153 41 1 9.4889 -0.7699 0.5020 42 1 9.3000 0.2957 -0.9119 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050501502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:31 Heat of formation + Delta-G solvation = 67.842657 kcal Electronic energy + Delta-G solvation = -24851.327342 eV Core-core repulsion = 21346.105977 eV Total energy + Delta-G solvation = -3505.221366 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96286 -39.72193 -37.74520 -35.88585 -33.64142 -32.42517 -30.65358 -29.76608 -28.51806 -27.64971 -26.24123 -24.84534 -23.94152 -22.34924 -21.10842 -20.60077 -19.35323 -18.38712 -17.98377 -16.98064 -16.44271 -15.90101 -15.81945 -15.02825 -14.83330 -14.44483 -14.00044 -13.79499 -13.57813 -13.51407 -13.34525 -13.16847 -13.12650 -12.88397 -12.56653 -12.29069 -11.86828 -11.63087 -11.40651 -11.34519 -11.12535 -11.05319 -10.73392 -10.44348 -10.31347 -10.05912 -9.98516 -9.77990 -9.75208 -9.59164 -9.35160 -9.06555 -8.52704 -8.44457 -6.65006 -5.78027 -3.20639 0.34761 1.14126 1.58419 1.58688 2.88019 3.22177 3.38521 3.45722 3.46771 4.21169 4.49423 4.51320 4.66654 4.83304 4.90379 5.07089 5.12496 5.26568 5.36234 5.39807 5.50834 5.54293 5.58530 5.63018 5.66427 5.72783 5.86534 5.96836 6.08340 6.12473 6.23345 6.29953 6.49338 6.59582 6.65243 6.68270 6.84413 6.98152 7.34581 7.65784 7.78621 7.81045 8.13123 8.46933 9.22721 9.86047 10.42640 11.30110 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.031955 B = 0.002740 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.034810 B =10214.927871 C =10502.464493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.250 4.250 3 C -0.142 4.142 4 C 0.064 3.936 5 C 0.612 3.388 6 O -0.537 6.537 7 N -0.622 5.622 8 C 0.113 3.887 9 C -0.078 4.078 10 C 0.116 3.884 11 C -0.105 4.105 12 C 0.147 3.853 13 N -0.590 5.590 14 C -0.252 4.252 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.902 5.902 18 Si 0.901 3.099 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.171 3.829 23 C -0.123 4.123 24 N -0.510 5.510 25 S 0.452 5.548 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.170 0.830 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.018 0.982 38 H 0.254 0.746 39 H 0.090 0.910 40 H 0.019 0.981 41 H 0.063 0.937 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.861 -7.497 -5.624 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.380 4.380 3 C -0.174 4.174 4 C -0.111 4.111 5 C 0.397 3.603 6 O -0.414 6.414 7 N -0.355 5.355 8 C -0.010 4.010 9 C -0.079 4.079 10 C -0.006 4.006 11 C -0.144 4.144 12 C 0.021 3.979 13 N -0.313 5.313 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.731 3.269 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.045 3.955 23 C -0.163 4.163 24 N -0.344 5.344 25 S 0.607 5.393 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.188 0.812 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.037 0.963 41 H 0.081 0.919 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.284 -8.724 -5.679 24.596 hybrid contribution 0.350 1.511 0.264 1.573 sum -21.934 -7.213 -5.415 23.716 Atomic orbital electron populations 1.20203 0.86087 1.03698 1.03208 1.26084 1.03311 1.00142 1.08492 1.21257 0.90266 1.01944 1.03928 1.21054 0.94682 0.89232 1.06098 1.16687 0.80058 0.86369 0.77182 1.90802 1.82581 1.16111 1.51916 1.49425 1.03575 1.12261 1.70286 1.23182 0.89916 0.87150 1.00702 1.21685 0.94818 0.94893 0.96539 1.23158 0.78149 0.98403 1.00856 1.21701 0.99086 1.01569 0.92073 1.20885 0.86071 0.94242 0.96733 1.44024 1.07257 1.78372 1.01634 1.19200 0.84842 1.35641 0.98459 0.91739 1.25037 0.97710 0.98142 0.98742 1.70028 1.19464 1.36766 1.28377 0.86302 0.82111 0.79102 0.79335 1.21461 1.21821 1.20476 1.20793 0.96990 0.94730 0.82972 1.22063 0.94047 1.01686 0.98510 1.72449 1.28154 1.10731 1.23075 1.80510 0.87966 1.12737 1.58092 0.90199 0.90681 0.90223 0.81248 0.89923 0.90073 0.89617 0.90061 0.93142 0.91720 0.92656 0.96367 0.93636 0.89163 0.96323 0.91855 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.46 36.00 0.38 0.01 16 2 C -0.25 -2.12 6.58 -35.46 -0.23 -2.35 16 3 C -0.14 -1.60 9.92 -40.27 -0.40 -2.00 16 4 C 0.06 0.89 6.66 -84.06 -0.56 0.33 16 5 C 0.61 10.22 8.06 -12.40 -0.10 10.12 16 6 O -0.54 -10.33 17.43 5.30 0.09 -10.24 16 7 N -0.62 -9.96 3.46 -186.50 -0.65 -10.60 16 8 C 0.11 1.63 6.72 -8.36 -0.06 1.58 16 9 C -0.08 -1.28 0.83 -155.18 -0.13 -1.41 16 10 C 0.12 1.89 7.56 -8.22 -0.06 1.83 16 11 C -0.10 -1.85 5.25 -26.78 -0.14 -1.99 16 12 C 0.15 3.09 6.41 -3.65 -0.02 3.06 16 13 N -0.59 -14.46 2.96 -172.18 -0.51 -14.97 16 14 C -0.25 -6.81 9.56 -15.06 -0.14 -6.96 16 15 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16 16 C 0.00 0.06 4.89 -17.43 -0.09 -0.02 16 17 N -0.90 -25.85 11.21 55.49 0.62 -25.23 16 18 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 C 0.17 3.90 5.27 -3.64 -0.02 3.88 16 23 C -0.12 -2.19 5.31 -26.77 -0.14 -2.33 16 24 N -0.51 -6.44 9.34 24.84 0.23 -6.21 16 25 S 0.45 3.92 23.20 -107.50 -2.49 1.43 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.17 1.82 7.99 -52.48 -0.42 1.40 16 30 H 0.08 1.18 7.28 -51.93 -0.38 0.80 16 31 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 32 H 0.09 1.30 8.06 -51.93 -0.42 0.88 16 33 H 0.08 1.44 7.53 -51.93 -0.39 1.05 16 34 H 0.05 0.86 7.95 -51.93 -0.41 0.45 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 1.15 7.92 -51.93 -0.41 0.74 16 37 H 0.02 0.40 7.59 -51.93 -0.39 0.00 16 38 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.09 2.33 5.97 -51.93 -0.31 2.02 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 353.54 15.07 5.33 5.33 Total: -1.00 -31.76 353.54 -10.18 -41.94 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -6.06 Total: -1.69 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.72 Total: 3.76 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.30 Total: -57.01 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -2.49 Total: 1.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.76 -10.18 -41.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050501502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.785 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds