Wall clock time and date at job start Tue Mar 31 2020 12:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34998 * 127.27442 * 2 1 4 4 C 1.39487 * 111.68548 * 179.97438 * 3 2 1 5 5 C 1.47696 * 122.10194 * 179.97438 * 4 3 2 6 6 O 1.21576 * 120.00052 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99698 * 179.97438 * 5 4 3 8 8 C 1.47172 * 136.00174 * 359.63966 * 7 5 4 9 9 C 1.52649 * 87.96898 * 206.71555 * 8 7 5 10 10 C 1.47156 * 135.99925 * 180.02562 * 7 5 4 11 11 C 1.52549 * 113.89804 * 88.16985 * 9 8 7 12 12 C 1.53353 * 109.13272 * 190.30450 * 11 9 8 13 13 N 1.46880 * 108.74822 * 307.76123 * 12 11 9 14 14 C 1.36939 * 120.46291 * 235.59881 * 13 12 11 15 15 H 1.08001 * 119.99560 * 28.47412 * 14 13 12 16 16 C 1.38814 * 120.00216 * 208.47025 * 14 13 12 17 17 N 1.31613 * 120.00023 * 17.65340 * 16 14 13 18 18 Si 1.86801 * 119.99649 * 197.64961 * 16 14 13 19 19 H 1.48495 * 109.46892 * 90.00546 * 18 16 14 20 20 H 1.48507 * 109.46695 * 210.00064 * 18 16 14 21 21 H 1.48493 * 109.47353 * 329.99831 * 18 16 14 22 22 C 1.46892 * 119.07557 * 55.62620 * 13 12 11 23 23 C 1.52555 * 114.25711 * 220.76324 * 9 8 7 24 24 N 1.30602 * 115.79168 * 0.24805 * 4 3 2 25 25 S 1.56140 * 109.79985 * 359.60879 * 24 4 3 26 26 H 1.08998 * 109.47320 * 90.00695 * 1 2 3 27 27 H 1.08998 * 109.46974 * 210.00211 * 1 2 3 28 28 H 1.08998 * 109.47294 * 330.00143 * 1 2 3 29 29 H 1.08007 * 124.15860 * 359.92478 * 3 2 1 30 30 H 1.08999 * 113.48456 * 321.40232 * 8 7 5 31 31 H 1.08995 * 113.48979 * 91.91401 * 8 7 5 32 32 H 1.09005 * 113.48866 * 268.08514 * 10 7 5 33 33 H 1.09004 * 113.49100 * 38.59110 * 10 7 5 34 34 H 1.09001 * 109.53120 * 310.20316 * 11 9 8 35 35 H 1.09003 * 109.52684 * 70.41009 * 11 9 8 36 36 H 1.09000 * 109.58975 * 187.97730 * 12 11 9 37 37 H 1.09002 * 109.59124 * 67.53954 * 12 11 9 38 38 H 0.96997 * 120.00374 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.59330 * 184.58859 * 22 13 12 40 40 H 1.08998 * 109.59750 * 64.14314 * 22 13 12 41 41 H 1.09002 * 109.52752 * 289.75011 * 23 9 8 42 42 H 1.08993 * 109.52801 * 49.88994 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0742 0.0000 4 6 3.6681 0.6994 0.0006 5 6 4.7604 1.6936 0.0001 6 8 4.5012 2.8814 -0.0012 7 7 6.0444 1.2840 0.0013 8 6 6.7423 -0.0117 0.0094 9 6 7.9173 0.6869 0.6887 10 6 7.3635 1.9361 0.0017 11 6 7.8206 0.7198 2.2108 12 6 8.9022 1.6563 2.7630 13 7 10.2008 1.2600 2.2026 14 6 11.2508 0.9596 3.0287 15 1 11.0648 0.5652 4.0168 16 6 12.5542 1.1620 2.5961 17 7 12.7914 1.9458 1.5659 18 14 13.9714 0.3217 3.4764 19 1 14.2315 -0.9983 2.8480 20 1 15.1883 1.1669 3.3743 21 1 13.6213 0.1289 4.9065 22 6 10.3576 1.1909 0.7437 23 6 9.2867 0.2507 0.1770 24 7 3.8995 -0.5860 -0.0041 25 16 2.5473 -1.3668 0.0009 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.9806 2.0981 -0.0012 30 1 6.2612 -0.7603 0.6390 31 1 6.9763 -0.3854 -0.9874 32 1 7.7685 2.0981 -0.9973 33 1 7.4063 2.8295 0.6248 34 1 6.8370 1.0854 2.5056 35 1 7.9711 -0.2844 2.6072 36 1 8.9336 1.5776 3.8497 37 1 8.6780 2.6834 2.4751 38 1 13.7021 2.0870 1.2633 39 1 11.3478 0.8057 0.5004 40 1 10.2345 2.1855 0.3153 41 1 9.4889 -0.7699 0.5020 42 1 9.3000 0.2957 -0.9119 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050501502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:30 Heat of formation + Delta-G solvation = 48.661277 kcal Electronic energy + Delta-G solvation = -24852.159110 eV Core-core repulsion = 21346.105977 eV Total energy + Delta-G solvation = -3506.053133 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.19915 -40.76841 -38.99122 -37.58655 -34.48549 -34.08875 -32.28663 -31.45761 -29.33560 -28.96163 -27.55612 -26.20388 -25.38964 -23.98381 -22.63092 -21.57435 -20.52059 -19.57734 -19.23629 -18.37662 -17.86560 -17.16495 -17.04942 -16.78422 -16.05363 -15.67215 -15.35307 -15.30953 -14.90513 -14.88955 -14.57484 -14.10019 -13.97034 -13.90278 -13.77541 -13.48753 -13.37672 -13.09056 -12.96152 -12.91168 -12.58128 -12.32957 -12.24889 -12.01341 -11.86866 -11.82029 -11.44698 -11.31249 -11.18975 -10.84796 -10.49036 -10.48222 -9.98237 -9.64984 -8.64715 -7.85186 -5.30954 -0.48355 0.43939 0.65506 0.76865 1.48720 1.49806 1.58544 1.71466 2.07882 2.53077 3.17924 3.29579 3.42004 3.67690 3.73081 3.81322 3.98057 4.16740 4.20984 4.26853 4.35715 4.45784 4.54920 4.58306 4.67422 4.70445 4.76216 4.77364 4.77954 4.90692 4.91216 5.00640 5.10253 5.15517 5.20246 5.32160 5.33240 5.34572 5.54002 5.67379 5.80718 6.42149 6.56042 6.89282 7.17893 7.88581 8.40095 9.20516 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.031955 B = 0.002740 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.034810 B =10214.927871 C =10502.464493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.235 4.235 3 C -0.165 4.165 4 C 0.039 3.961 5 C 0.606 3.394 6 O -0.577 6.577 7 N -0.625 5.625 8 C 0.132 3.868 9 C -0.078 4.078 10 C 0.113 3.887 11 C -0.090 4.090 12 C 0.146 3.854 13 N -0.607 5.607 14 C -0.262 4.262 15 H 0.064 0.936 16 C -0.049 4.049 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.283 1.283 20 H -0.297 1.297 21 H -0.271 1.271 22 C 0.176 3.824 23 C -0.107 4.107 24 N -0.542 5.542 25 S 0.528 5.472 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.166 0.834 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.007 0.993 38 H 0.250 0.750 39 H 0.058 0.942 40 H -0.002 1.002 41 H 0.065 0.935 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.230 -10.185 -5.926 27.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.365 4.365 3 C -0.196 4.196 4 C -0.133 4.133 5 C 0.392 3.608 6 O -0.457 6.457 7 N -0.358 5.358 8 C 0.010 3.990 9 C -0.079 4.079 10 C -0.009 4.009 11 C -0.129 4.129 12 C 0.020 3.980 13 N -0.330 5.330 14 C -0.392 4.392 15 H 0.082 0.918 16 C -0.244 4.244 17 N -0.579 5.579 18 Si 0.794 3.206 19 H -0.209 1.209 20 H -0.224 1.224 21 H -0.196 1.196 22 C 0.051 3.949 23 C -0.146 4.146 24 N -0.379 5.379 25 S 0.683 5.317 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.183 0.817 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.025 0.975 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.016 0.984 41 H 0.084 0.916 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.679 -11.428 -5.975 27.845 hybrid contribution 0.966 2.310 0.382 2.532 sum -23.713 -9.118 -5.593 26.014 Atomic orbital electron populations 1.20427 0.83347 1.05110 1.04647 1.26526 1.05001 0.99217 1.05795 1.21265 0.89890 1.02731 1.05735 1.20740 0.94389 0.89155 1.09066 1.17208 0.80688 0.86629 0.76248 1.90761 1.83262 1.17933 1.53724 1.49475 1.03397 1.12752 1.70135 1.23092 0.87959 0.86398 1.01569 1.21561 0.94930 0.95663 0.95721 1.23155 0.79028 0.97591 1.01174 1.21491 0.97786 1.00662 0.92992 1.20956 0.85813 0.94560 0.96675 1.44283 1.07816 1.78745 1.02197 1.19498 0.85846 1.35060 0.98802 0.91830 1.25765 0.99954 0.98923 0.99774 1.70180 1.19548 1.38253 1.29949 0.85294 0.78785 0.77892 0.78632 1.20934 1.22368 1.19581 1.20632 0.97188 0.94680 0.82445 1.21831 0.92801 1.00097 0.99882 1.72106 1.31532 1.10412 1.23832 1.80196 0.85727 1.10752 1.55059 0.88567 0.88457 0.89653 0.81695 0.89207 0.87947 0.88355 0.92225 0.92471 0.91235 0.92979 0.97499 0.94087 0.92359 0.98402 0.91635 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.46 71.23 0.75 0.27 16 2 C -0.23 -3.31 6.58 24.94 0.16 -3.15 16 3 C -0.16 -3.55 9.92 21.83 0.22 -3.33 16 4 C 0.04 1.04 6.66 42.13 0.28 1.32 16 5 C 0.61 20.32 8.06 86.74 0.70 21.02 16 6 O -0.58 -22.93 17.43 -3.95 -0.07 -23.00 16 7 N -0.63 -19.63 3.46 -862.22 -2.98 -22.62 16 8 C 0.13 3.52 6.72 83.21 0.56 4.08 16 9 C -0.08 -2.46 0.83 -52.61 -0.04 -2.50 16 10 C 0.11 3.68 7.56 83.31 0.63 4.31 16 11 C -0.09 -3.12 5.25 30.56 0.16 -2.96 16 12 C 0.15 6.22 6.41 86.43 0.55 6.78 16 13 N -0.61 -30.33 2.96 -698.65 -2.07 -32.40 16 14 C -0.26 -14.38 9.56 84.03 0.80 -13.58 16 15 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 16 C -0.05 -2.71 4.89 84.86 0.42 -2.29 16 17 N -0.93 -54.99 11.21 21.65 0.24 -54.75 16 18 Si 0.97 44.74 29.59 68.60 2.03 46.77 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C 0.18 8.21 5.27 86.43 0.46 8.67 16 23 C -0.11 -3.67 5.31 30.57 0.16 -3.51 16 24 N -0.54 -12.53 9.34 -75.32 -0.70 -13.23 16 25 S 0.53 7.40 23.20 -56.49 -1.31 6.09 16 26 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.17 3.57 7.99 -2.91 -0.02 3.55 16 30 H 0.09 2.33 7.28 -2.39 -0.02 2.31 16 31 H 0.10 2.36 8.09 -2.39 -0.02 2.34 16 32 H 0.10 2.94 8.06 -2.38 -0.02 2.92 16 33 H 0.06 2.19 7.53 -2.38 -0.02 2.17 16 34 H 0.06 1.91 7.95 -2.39 -0.02 1.89 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.05 2.21 7.92 -2.39 -0.02 2.19 16 37 H 0.01 0.32 7.59 -2.39 -0.02 0.30 16 38 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 39 H 0.06 3.09 5.97 -2.38 -0.01 3.08 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.08 2.36 8.10 -2.39 -0.02 2.34 16 Total: -1.00 -71.16 353.54 1.96 -69.20 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.02 Total: 8.84 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 5.80 Total: 15.11 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -5.51 Total: -123.00 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.07 Total: -23.00 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 7.40 SS G_CDS: -1.31 Total: 6.09 kcal Total: -71.16 1.96 -69.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050501502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.858 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds