Wall clock time and date at job start Tue Mar 31 2020 13:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 N 1.46495 * 109.47059 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00359 * 263.78476 * 4 3 2 6 6 H 1.08001 * 120.00241 * 142.61849 * 5 4 3 7 7 C 1.38810 * 119.99750 * 322.61705 * 5 4 3 8 8 N 1.31626 * 119.99634 * 157.40352 * 7 5 4 9 9 Si 1.86793 * 120.00174 * 337.40197 * 7 5 4 10 10 H 1.48501 * 109.47117 * 95.72247 * 9 7 5 11 11 H 1.48504 * 109.47111 * 215.71788 * 9 7 5 12 12 H 1.48494 * 109.47449 * 335.71536 * 9 7 5 13 13 C 1.46505 * 119.99804 * 83.78916 * 4 3 2 14 14 C 1.52997 * 109.47428 * 89.99821 * 13 4 3 15 15 C 1.52992 * 109.47375 * 180.02562 * 14 13 4 16 16 C 1.50704 * 109.47303 * 179.97438 * 15 14 13 17 17 N 1.30933 * 126.39971 * 90.29553 * 16 15 14 18 18 C 1.35391 * 105.57847 * 180.08479 * 17 16 15 19 19 C 1.47730 * 126.45409 * 179.89975 * 18 17 16 20 20 C 1.34856 * 125.27702 * 179.73062 * 19 18 17 21 21 C 1.37816 * 114.72694 * 179.97438 * 20 19 18 22 22 C 1.33716 * 115.07097 * 0.02562 * 21 20 19 23 23 S 1.75862 * 109.74897 * 359.97438 * 22 21 20 24 24 N 1.31042 * 107.10054 * 359.64584 * 18 17 16 25 25 O 1.21290 * 110.04241 * 0.22058 * 24 18 17 26 26 H 1.09004 * 109.47180 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47495 * 300.00247 * 1 2 3 28 28 H 1.08999 * 109.46992 * 60.00319 * 1 2 3 29 29 H 1.08993 * 109.47537 * 240.00219 * 2 1 3 30 30 H 1.08999 * 109.46992 * 119.99681 * 2 1 3 31 31 H 1.09004 * 109.47128 * 59.99528 * 3 2 1 32 32 H 1.08999 * 109.46917 * 299.99727 * 3 2 1 33 33 H 0.96995 * 119.99738 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.47032 * 329.99608 * 13 4 3 35 35 H 1.09002 * 109.47318 * 210.00067 * 13 4 3 36 36 H 1.09004 * 109.47188 * 59.99883 * 14 13 4 37 37 H 1.09002 * 109.47072 * 300.00396 * 14 13 4 38 38 H 1.08999 * 109.47330 * 60.00183 * 15 14 13 39 39 H 1.09000 * 109.47466 * 299.99688 * 15 14 13 40 40 H 1.08000 * 122.63223 * 359.97438 * 20 19 18 41 41 H 1.08003 * 122.46254 * 179.97438 * 21 20 19 42 42 H 1.08007 * 125.12888 * 180.26448 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.5711 1.1798 6 1 5.1028 1.0170 1.3372 7 6 3.7086 2.4136 2.1728 8 7 4.0680 2.2268 3.4251 9 14 2.5520 3.8125 1.7317 10 1 1.1472 3.3766 1.9367 11 1 2.8383 4.9836 2.5988 12 1 2.7508 4.1895 0.3093 13 6 4.2379 1.3051 -1.2604 14 6 4.4932 2.6911 -1.8557 15 6 5.2581 2.5475 -3.1729 16 6 5.5090 3.9128 -3.7596 17 7 6.5535 4.6718 -3.5425 18 6 6.3453 5.7939 -4.2709 19 6 7.2445 6.9628 -4.3588 20 6 7.0155 8.0678 -5.0972 21 6 8.0010 9.0280 -5.0188 22 6 9.0317 8.7185 -4.2251 23 16 8.7795 7.1290 -3.5162 24 7 5.1987 5.6457 -4.8877 25 8 4.7094 4.5729 -4.6035 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7319 2.8152 4.1191 34 1 3.6491 0.7119 -1.9601 35 1 5.1903 0.8083 -1.0748 36 1 5.0820 3.2843 -1.1560 37 1 3.5408 3.1879 -2.0413 38 1 4.6689 1.9546 -3.8725 39 1 6.2105 2.0507 -2.9878 40 1 6.1294 8.1905 -5.7024 41 1 7.9452 9.9614 -5.5593 42 1 9.8876 9.3515 -4.0428 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058910783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:50 Heat of formation + Delta-G solvation = 92.529309 kcal Electronic energy + Delta-G solvation = -23833.137082 eV Core-core repulsion = 20328.986210 eV Total energy + Delta-G solvation = -3504.150872 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.66835 -38.97885 -38.58012 -37.06770 -35.86387 -34.32975 -33.66679 -32.13845 -30.55448 -28.20784 -27.32772 -26.23941 -25.13029 -24.24726 -22.97062 -22.65157 -21.50746 -20.00238 -19.49750 -19.20581 -18.75609 -17.77502 -17.31781 -16.77432 -16.32794 -15.99688 -15.66892 -15.12145 -14.94243 -14.80681 -14.57864 -14.51056 -14.15360 -13.87733 -13.74267 -13.50791 -13.29114 -13.14836 -13.00566 -12.84430 -12.65537 -12.54827 -12.33306 -12.30659 -12.21632 -11.82438 -11.81508 -11.66102 -11.43565 -11.31292 -11.21398 -10.61787 -9.71125 -9.61667 -8.74229 -8.19955 -5.54544 -0.66044 0.15803 0.34350 0.91082 1.12257 1.25918 1.37561 1.45920 1.71119 1.80681 2.36280 2.40159 2.95839 3.06563 3.39146 3.77400 4.06922 4.09409 4.20035 4.24942 4.27766 4.33772 4.37783 4.50884 4.60913 4.64846 4.70821 4.76372 4.78927 4.84694 4.90903 4.96391 4.97769 5.15531 5.15927 5.24180 5.29104 5.32748 5.43968 5.50354 5.59768 5.98264 6.21032 6.95969 7.03763 7.68238 8.08995 9.00453 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.002925 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.214449 B = 9570.542060 C =10395.636726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.128 3.872 4 N -0.618 5.618 5 C -0.246 4.246 6 H 0.047 0.953 7 C -0.018 4.018 8 N -0.950 5.950 9 Si 0.930 3.070 10 H -0.275 1.275 11 H -0.317 1.317 12 H -0.260 1.260 13 C 0.151 3.849 14 C -0.130 4.130 15 C -0.017 4.017 16 C 0.209 3.791 17 N -0.506 5.506 18 C 0.228 3.772 19 C -0.174 4.174 20 C -0.084 4.084 21 C -0.145 4.145 22 C -0.185 4.185 23 S 0.158 5.842 24 N -0.392 5.392 25 O 0.078 5.922 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.027 0.973 32 H 0.060 0.940 33 H 0.260 0.740 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.054 0.946 38 H 0.144 0.856 39 H 0.126 0.874 40 H 0.150 0.850 41 H 0.181 0.819 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 7.721 -20.884 22.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.003 3.997 4 N -0.340 5.340 5 C -0.376 4.376 6 H 0.065 0.935 7 C -0.214 4.214 8 N -0.594 5.594 9 Si 0.760 3.240 10 H -0.202 1.202 11 H -0.246 1.246 12 H -0.185 1.185 13 C 0.026 3.974 14 C -0.171 4.171 15 C -0.056 4.056 16 C -0.011 4.011 17 N -0.240 5.240 18 C -0.042 4.042 19 C -0.292 4.292 20 C -0.120 4.120 21 C -0.174 4.174 22 C -0.322 4.322 23 S 0.423 5.577 24 N -0.102 5.102 25 O 0.020 5.980 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.162 0.838 39 H 0.144 0.856 40 H 0.167 0.833 41 H 0.198 0.802 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.487 7.518 -20.088 22.140 hybrid contribution -1.313 1.654 -0.126 2.116 sum 4.173 9.172 -20.214 22.587 Atomic orbital electron populations 1.21714 0.94934 1.02168 1.01507 1.21910 0.95919 0.97887 1.01394 1.21332 0.83313 0.96111 0.98907 1.44332 1.01237 1.85425 1.03022 1.18715 1.07903 1.19138 0.91857 0.93526 1.25989 1.00350 0.99871 0.95201 1.69990 1.49421 1.39626 1.00400 0.86053 0.79325 0.80404 0.78214 1.20215 1.24608 1.18456 1.21053 0.96801 0.93264 0.86273 1.22160 0.99076 1.01623 0.94233 1.20558 1.05292 0.83185 0.96607 1.29487 0.83871 0.98977 0.88729 1.72115 1.25183 1.03089 1.23601 1.23140 0.92145 0.94365 0.94533 1.21522 1.00925 0.96187 1.10599 1.20645 1.01442 0.91544 0.98388 1.20338 0.93061 1.01816 1.02219 1.26510 1.04864 0.99012 1.01858 1.84661 1.12520 1.15157 1.45364 1.74935 1.11481 1.00924 1.22845 1.85234 1.42978 1.21184 1.48650 0.91416 0.94430 0.91416 0.90756 0.94614 0.95445 0.92191 0.93097 0.89666 0.92536 0.94603 0.92744 0.83804 0.85608 0.83273 0.80192 0.77607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.91 71.98 0.71 -3.25 16 2 C -0.13 -4.43 6.25 30.59 0.19 -4.24 16 3 C 0.13 5.08 4.29 86.38 0.37 5.45 16 4 N -0.62 -26.99 2.08 -701.99 -1.46 -28.45 16 5 C -0.25 -13.52 9.91 84.03 0.83 -12.69 16 6 H 0.05 2.83 8.06 -2.91 -0.02 2.81 16 7 C -0.02 -1.05 5.26 84.86 0.45 -0.60 16 8 N -0.95 -59.74 13.97 21.65 0.30 -59.43 16 9 Si 0.93 46.95 25.05 68.60 1.72 48.67 16 10 H -0.28 -13.22 6.69 99.48 0.67 -12.56 16 11 H -0.32 -16.57 7.11 99.48 0.71 -15.86 16 12 H -0.26 -12.56 7.11 99.48 0.71 -11.86 16 13 C 0.15 4.92 5.69 86.38 0.49 5.41 16 14 C -0.13 -4.00 5.52 30.59 0.17 -3.83 16 15 C -0.02 -0.37 5.84 29.85 0.17 -0.20 16 16 C 0.21 5.86 7.75 88.35 0.68 6.54 16 17 N -0.51 -16.48 11.58 -302.26 -3.50 -19.98 16 18 C 0.23 7.24 8.02 136.95 1.10 8.34 16 19 C -0.17 -4.67 6.44 24.00 0.15 -4.51 16 20 C -0.08 -1.79 10.05 21.39 0.22 -1.57 16 21 C -0.15 -2.15 10.16 21.14 0.21 -1.94 16 22 C -0.19 -2.65 11.23 66.79 0.75 -1.90 16 23 S 0.16 3.52 23.32 -56.49 -1.32 2.21 16 24 N -0.39 -12.29 12.16 -58.77 -0.71 -13.00 16 25 O 0.08 2.26 11.29 74.49 0.84 3.10 16 26 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 2.15 8.12 -2.39 -0.02 2.13 16 30 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.03 1.26 3.60 -2.38 -0.01 1.25 16 32 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 33 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.09 2.12 8.05 -2.38 -0.02 2.10 16 35 H 0.06 1.85 8.04 -2.39 -0.02 1.83 16 36 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 41 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -73.75 368.28 3.35 -70.40 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 0.97 Total: 5.48 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 6.51 Total: -8.99 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -5.38 Total: -120.87 kcal Atomic # 8 Polarization: 2.26 SS G_CDS: 0.84 Total: 3.10 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.72 Total: 48.67 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.32 Total: 2.21 kcal Total: -73.75 3.35 -70.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058910783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.932 kcal (2) G-P(sol) polarization free energy of solvation -73.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds