Wall clock time and date at job start Tue Mar 31 2020 13:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00191 * 2 1 4 4 N 1.46500 * 109.46896 * 124.99955 * 3 2 1 5 5 C 1.37841 * 119.99958 * 180.02562 * 4 3 2 6 6 N 1.30230 * 124.74644 * 359.97049 * 5 4 3 7 7 C 1.30880 * 117.26279 * 180.02562 * 6 5 4 8 8 C 1.36707 * 114.03057 * 0.02562 * 7 6 5 9 9 C 1.46225 * 126.11016 * 179.97438 * 8 7 6 10 10 O 1.21744 * 119.99984 * 6.72532 * 9 8 7 11 11 N 1.34781 * 119.99623 * 186.72122 * 9 8 7 12 12 C 1.46500 * 119.99443 * 185.92914 * 11 9 8 13 13 C 1.50710 * 109.47049 * 269.72336 * 12 11 9 14 14 H 1.07995 * 119.99635 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99957 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00308 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99790 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47182 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47376 * 119.99839 * 17 15 13 20 20 H 1.48501 * 109.46980 * 239.99644 * 17 15 13 21 21 C 1.46496 * 120.00140 * 5.64943 * 11 9 8 22 22 C 1.52997 * 109.47477 * 274.30802 * 21 11 9 23 23 C 1.53000 * 117.50122 * 245.16511 * 22 21 11 24 24 C 1.53001 * 117.49989 * 176.50175 * 22 21 11 25 25 S 1.70924 * 124.74616 * 180.33287 * 5 4 3 26 26 H 1.08000 * 120.00399 * 179.97438 * 1 2 3 27 27 H 1.08008 * 119.99863 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.99553 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46664 * 5.00396 * 3 2 1 30 30 H 1.08997 * 109.47042 * 245.00151 * 3 2 1 31 31 H 0.96999 * 120.00225 * 0.02562 * 4 3 2 32 32 H 1.08004 * 122.98349 * 180.02562 * 7 6 5 33 33 H 1.08998 * 109.47644 * 29.72408 * 12 11 9 34 34 H 1.09004 * 109.47308 * 149.72779 * 12 11 9 35 35 H 0.97004 * 119.99978 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.47243 * 34.31155 * 21 11 9 37 37 H 1.09006 * 109.46561 * 154.31142 * 21 11 9 38 38 H 1.09004 * 115.54560 * 30.82870 * 22 21 11 39 39 H 1.09006 * 117.49588 * 359.97438 * 23 22 21 40 40 H 1.08997 * 117.50131 * 145.01550 * 23 22 21 41 41 H 1.08998 * 117.49712 * 214.97984 * 24 22 21 42 42 H 1.08996 * 117.49801 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 3.7962 2.4334 1.3381 6 7 3.8037 3.4975 0.5874 7 6 4.6271 4.4593 0.9190 8 6 5.3744 4.1933 2.0324 9 6 6.3716 5.0784 2.6326 10 8 6.5117 6.2120 2.2113 11 7 7.1357 4.6391 3.6524 12 6 8.0422 5.5628 4.3390 13 6 9.3882 5.5423 3.6614 14 1 9.5521 4.9048 2.8053 15 6 10.4106 6.3368 4.1352 16 7 10.2111 7.1128 5.1781 17 14 12.0787 6.3119 3.2948 18 1 12.0439 5.3627 2.1534 19 1 12.4027 7.6731 2.7975 20 1 13.1158 5.8799 4.2660 21 6 7.0553 3.2397 4.0780 22 6 5.9098 3.0760 5.0789 23 6 6.2744 2.6817 6.5116 24 6 5.6085 1.6631 5.5829 25 16 4.9268 2.5901 2.6104 26 1 -0.5401 -0.9353 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 3.0451 0.5743 1.7352 32 1 4.7089 5.3813 0.3624 33 1 7.6311 6.5715 4.3001 34 1 8.1543 5.2560 5.3790 35 1 10.9304 7.6720 5.5112 36 1 6.8729 2.6058 3.2102 37 1 7.9941 2.9489 4.5495 38 1 5.0660 3.7523 4.9423 39 1 7.3304 2.5385 6.7409 40 1 5.6702 3.0982 7.3175 41 1 4.5664 1.4101 5.7782 42 1 6.2266 0.8503 5.2017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136316752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:12 Heat of formation + Delta-G solvation = 47.927489 kcal Electronic energy + Delta-G solvation = -24399.287779 eV Core-core repulsion = 20893.202827 eV Total energy + Delta-G solvation = -3506.084952 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.03660 -40.37405 -38.40531 -37.55100 -36.13017 -34.66241 -34.14510 -31.13040 -29.45052 -28.00573 -27.39651 -25.72019 -24.51640 -23.20564 -22.41497 -21.60216 -21.00656 -20.21591 -19.35337 -18.63272 -17.94954 -17.81510 -16.72451 -16.62754 -16.36060 -16.21408 -16.01734 -15.72358 -15.27809 -15.12074 -14.85430 -14.38250 -14.19488 -14.12606 -13.81315 -13.46321 -13.36073 -12.97928 -12.69683 -12.60601 -12.42704 -12.26369 -12.17676 -12.01707 -11.72199 -11.38998 -11.25833 -11.07864 -10.95673 -10.64721 -10.55354 -10.30733 -9.95883 -9.56598 -8.65557 -8.21507 -6.36233 -0.41193 0.14037 0.69676 1.22462 1.35964 1.39043 1.50734 1.64905 2.18623 2.34100 2.38632 2.44047 2.95064 3.07553 3.56314 3.66715 3.88537 3.93530 3.99504 4.15307 4.18444 4.33314 4.43052 4.50395 4.58753 4.73270 4.74784 4.89123 4.93256 5.01467 5.03065 5.09910 5.21418 5.26277 5.37055 5.55349 5.63910 5.70878 5.81141 5.82481 6.05934 6.14611 6.63967 6.72760 6.96776 7.25081 7.40332 8.85399 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.003331 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.588790 B = 8403.118969 C = 9269.893361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.183 4.183 3 C 0.157 3.843 4 N -0.666 5.666 5 C 0.275 3.725 6 N -0.580 5.580 7 C 0.170 3.830 8 C -0.378 4.378 9 C 0.582 3.418 10 O -0.591 6.591 11 N -0.596 5.596 12 C 0.269 3.731 13 C -0.541 4.541 14 H 0.050 0.950 15 C 0.010 3.990 16 N -0.926 5.926 17 Si 0.967 3.033 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.130 3.870 22 C -0.200 4.200 23 C -0.177 4.177 24 C -0.136 4.136 25 S 0.257 5.743 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.132 0.868 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.429 0.571 32 H 0.175 0.825 33 H -0.003 1.003 34 H 0.030 0.970 35 H 0.267 0.733 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.120 0.880 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.045 -21.830 -3.610 28.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.201 4.201 3 C 0.032 3.968 4 N -0.305 5.305 5 C -0.092 4.092 6 N -0.306 5.306 7 C 0.010 3.990 8 C -0.504 4.504 9 C 0.372 3.628 10 O -0.474 6.474 11 N -0.325 5.325 12 C 0.148 3.852 13 C -0.579 4.579 14 H 0.068 0.932 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.791 3.209 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.191 1.191 21 C 0.006 3.994 22 C -0.221 4.221 23 C -0.214 4.214 24 C -0.173 4.173 25 S 0.511 5.489 26 H 0.139 0.861 27 H 0.116 0.884 28 H 0.150 0.850 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.269 0.731 32 H 0.192 0.808 33 H 0.015 0.985 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.138 0.862 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -18.091 -21.846 -3.483 28.577 hybrid contribution 1.130 1.609 -0.697 2.087 sum -16.961 -20.237 -4.180 26.733 Atomic orbital electron populations 1.24189 0.95659 1.03260 0.96332 1.22942 0.96333 0.97344 1.03504 1.20501 0.91049 0.96680 0.88581 1.43960 1.39547 1.15030 1.31931 1.25101 0.95617 0.91424 0.97008 1.66295 1.28451 1.02221 1.33636 1.21966 0.88114 0.97133 0.91816 1.25263 1.13457 1.03019 1.08666 1.17200 0.80134 0.85929 0.79585 1.90751 1.71406 1.21915 1.63351 1.47976 1.40254 1.11494 1.32791 1.18746 0.87126 0.87659 0.91635 1.21692 0.96817 1.25050 1.14377 0.93177 1.25821 1.03032 0.94454 0.95643 1.70054 1.34414 1.26868 1.25287 0.85383 0.78916 0.77956 0.78645 1.19348 1.20766 1.19139 1.21495 0.99286 0.81100 0.97542 1.22692 1.00062 1.02001 0.97378 1.23104 1.01892 1.04064 0.92366 1.23135 1.03134 0.90451 1.00628 1.84358 1.30604 1.10010 1.23903 0.86074 0.88372 0.85038 0.91969 0.91540 0.73067 0.80837 0.98507 0.95223 0.92360 0.89170 0.89019 0.88621 0.88991 0.88377 0.86206 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 14.32 67.78 0.97 -0.18 16 2 C -0.18 -1.57 9.63 25.64 0.25 -1.32 16 3 C 0.16 2.25 6.36 85.63 0.54 2.79 16 4 N -0.67 -10.26 5.67 -355.08 -2.01 -12.28 16 5 C 0.28 6.49 8.05 179.43 1.44 7.93 16 6 N -0.58 -17.35 10.06 -200.63 -2.02 -19.37 16 7 C 0.17 5.87 11.15 84.48 0.94 6.81 16 8 C -0.38 -13.74 6.22 23.99 0.15 -13.59 16 9 C 0.58 27.51 7.59 86.32 0.65 28.16 16 10 O -0.59 -33.69 16.51 -4.49 -0.07 -33.76 16 11 N -0.60 -27.25 2.46 -831.35 -2.05 -29.29 16 12 C 0.27 15.03 5.10 85.64 0.44 15.47 16 13 C -0.54 -32.11 9.39 25.60 0.24 -31.87 16 14 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 15 C 0.01 0.56 5.46 84.65 0.46 1.02 16 16 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 17 Si 0.97 45.89 29.54 68.60 2.03 47.92 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 C 0.13 4.34 5.21 86.38 0.45 4.79 16 22 C -0.20 -5.28 3.66 -10.79 -0.04 -5.32 16 23 C -0.18 -4.06 10.18 30.62 0.31 -3.74 16 24 C -0.14 -2.24 9.59 30.62 0.29 -1.94 16 25 S 0.26 6.11 15.41 -56.49 -0.87 5.24 16 26 H 0.12 0.49 8.06 -2.91 -0.02 0.47 16 27 H 0.10 0.78 7.84 -2.91 -0.02 0.76 16 28 H 0.13 0.73 8.06 -2.91 -0.02 0.71 16 29 H 0.06 1.04 7.79 -2.38 -0.02 1.02 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.43 3.91 8.59 -92.71 -0.80 3.11 16 32 H 0.17 6.05 8.06 -2.91 -0.02 6.02 16 33 H 0.00 -0.21 7.50 -2.39 -0.02 -0.22 16 34 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.09 2.65 4.92 -18.72 -0.09 2.55 16 37 H 0.09 3.12 7.78 -2.38 -0.02 3.10 16 38 H 0.10 2.82 7.63 -2.39 -0.02 2.80 16 39 H 0.09 2.24 8.04 -2.38 -0.02 2.22 16 40 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -79.28 367.19 2.55 -76.73 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.16 Total: 12.24 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 7.11 Total: 9.02 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -5.80 Total: -117.38 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.07 Total: -33.76 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 16 Polarization: 6.11 SS G_CDS: -0.87 Total: 5.24 kcal Total: -79.28 2.55 -76.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136316752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.655 kcal (2) G-P(sol) polarization free energy of solvation -79.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds