Wall clock time and date at job start Tue Mar 31 2020 12:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50695 * 109.47105 * 2 1 4 4 C 1.34807 * 119.99990 * 85.42776 * 3 2 1 5 5 C 1.46431 * 120.00337 * 353.35469 * 4 3 2 6 6 O 1.21702 * 119.99460 * 353.47150 * 5 4 3 7 7 N 1.34775 * 120.00621 * 173.47217 * 5 4 3 8 8 C 1.46494 * 120.00301 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47169 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.47167 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47012 * 180.02562 * 10 9 8 12 12 H 1.07990 * 120.00387 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99473 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00637 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99535 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47540 * 60.00209 * 15 13 11 17 17 H 1.48501 * 109.47337 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47174 * 300.00116 * 15 13 11 19 19 C 1.47207 * 120.00506 * 265.42460 * 3 2 1 20 20 C 1.39864 * 120.15738 * 64.71952 * 19 3 2 21 21 C 1.37881 * 119.85084 * 179.77122 * 20 19 3 22 22 C 1.38404 * 120.18184 * 0.51325 * 21 20 19 23 23 C 1.38496 * 120.33417 * 359.74060 * 22 21 20 24 24 Cl 1.73606 * 119.92823 * 180.02562 * 23 22 21 25 25 C 1.38032 * 120.14381 * 0.02562 * 23 22 21 26 26 H 1.09003 * 109.46990 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46979 * 300.00225 * 1 2 3 28 28 H 1.09005 * 109.46716 * 60.00074 * 1 2 3 29 29 H 1.09005 * 109.46716 * 119.99926 * 2 1 3 30 30 H 1.08998 * 109.46979 * 239.99775 * 2 1 3 31 31 H 1.08004 * 120.00476 * 173.36194 * 4 3 2 32 32 H 0.96997 * 119.99698 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.47223 * 299.99800 * 8 7 5 34 34 H 1.09000 * 109.47214 * 59.99397 * 8 7 5 35 35 H 1.08997 * 109.47186 * 299.99365 * 9 8 7 36 36 H 1.08993 * 109.47192 * 59.99992 * 9 8 7 37 37 H 1.09001 * 109.46792 * 300.00241 * 10 9 8 38 38 H 1.09000 * 109.47177 * 59.99591 * 10 9 8 39 39 H 0.97001 * 120.00605 * 179.97438 * 14 13 11 40 40 H 1.07992 * 120.07823 * 0.02858 * 20 19 3 41 41 H 1.07995 * 119.91002 * 180.23442 * 21 20 19 42 42 H 1.08002 * 119.83504 * 179.76453 * 22 21 20 43 43 H 1.07997 * 120.09385 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1693 2.0873 1.1637 5 6 1.6948 1.4864 2.4119 6 8 1.0716 0.4414 2.3857 7 7 1.9482 2.0904 3.5898 8 6 1.4740 1.4889 4.8385 9 6 1.8923 2.3677 6.0190 10 6 1.3964 1.7398 7.3232 11 6 1.8079 2.6057 8.4859 12 1 2.3674 3.5129 8.3121 13 6 1.4699 2.2397 9.7715 14 7 0.7881 1.1353 9.9831 15 14 1.9806 3.3127 11.2128 16 1 1.3879 4.6654 11.0574 17 1 1.4992 2.7034 12.4786 18 1 3.4611 3.4222 11.2483 19 6 2.3736 2.0809 -1.2707 20 6 1.3791 2.3308 -2.2219 21 6 1.7050 2.9538 -3.4080 22 6 3.0143 3.3224 -3.6636 23 6 4.0060 3.0738 -2.7293 24 17 5.6449 3.5412 -3.0606 25 6 3.6942 2.4553 -1.5354 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 2.6288 3.0646 1.1756 32 1 2.4453 2.9231 3.6107 33 1 0.3873 1.4074 4.8129 34 1 1.9101 0.4964 4.9523 35 1 2.9789 2.4487 6.0446 36 1 1.4565 3.3603 5.9054 37 1 0.3097 1.6591 7.2974 38 1 1.8318 0.7470 7.4370 39 1 0.5506 0.8776 10.8877 40 1 0.3576 2.0403 -2.0261 41 1 0.9372 3.1507 -4.1416 42 1 3.2640 3.8066 -4.5962 43 1 4.4681 2.2623 -0.8072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174292338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:48 Heat of formation + Delta-G solvation = -26.585826 kcal Electronic energy + Delta-G solvation = -23061.923737 eV Core-core repulsion = 19518.271188 eV Total energy + Delta-G solvation = -3543.652549 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19946 -39.36267 -37.00172 -36.04064 -34.92610 -33.33867 -31.75823 -31.31158 -30.93782 -29.82340 -26.86741 -24.85994 -23.12594 -23.09525 -22.84632 -20.91774 -20.53993 -19.06176 -17.33244 -16.86527 -16.43866 -15.94234 -15.86549 -15.29305 -15.22656 -14.94072 -14.46391 -14.20839 -14.03394 -13.96823 -13.55291 -13.47156 -12.89073 -12.50970 -12.29382 -12.21945 -11.99613 -11.85544 -11.82983 -11.75746 -11.36065 -11.22206 -10.92324 -10.76876 -10.72573 -10.62255 -9.86290 -9.71667 -9.67084 -9.34483 -9.28998 -9.13122 -9.01097 -8.65062 -8.37624 -6.02323 -4.05515 0.50568 0.74610 1.21871 1.70853 3.10226 3.31657 3.33725 3.36391 3.37884 3.45195 4.20763 4.36952 4.43922 4.58702 4.62535 4.72821 4.91771 5.03931 5.09197 5.25511 5.33291 5.38645 5.43660 5.50413 5.65706 5.71329 5.77409 5.80948 5.85388 5.92134 6.05668 6.11333 6.16014 6.27175 6.31654 6.42982 6.55411 6.59401 6.84795 7.00093 7.62468 7.73911 7.75266 7.96205 8.36569 8.41911 9.00915 9.58598 11.08866 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.001975 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.496022 B =14174.311656 C =15293.524413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.001 4.001 4 C -0.198 4.198 5 C 0.536 3.464 6 O -0.535 6.535 7 N -0.721 5.721 8 C 0.117 3.883 9 C -0.121 4.121 10 C 0.024 3.976 11 C -0.523 4.523 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.041 4.041 20 C -0.097 4.097 21 C -0.105 4.105 22 C -0.110 4.110 23 C -0.033 4.033 24 Cl -0.069 7.069 25 C -0.097 4.097 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.127 0.873 32 H 0.398 0.602 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 3.502 -30.500 30.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.004 4.004 4 C -0.219 4.219 5 C 0.325 3.675 6 O -0.416 6.416 7 N -0.371 5.371 8 C -0.005 4.005 9 C -0.159 4.159 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.042 4.042 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.060 4.060 24 Cl -0.040 7.040 25 C -0.116 4.116 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.232 0.768 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.794 2.687 -30.357 30.711 hybrid contribution 0.769 1.171 0.866 1.647 sum 4.563 3.858 -29.491 30.090 Atomic orbital electron populations 1.21658 0.93905 1.01974 1.01692 1.20820 0.97304 0.91128 1.03259 1.21021 0.93069 0.95753 0.90509 1.22852 1.05241 1.01619 0.92224 1.18254 0.80532 0.84710 0.84013 1.90775 1.40651 1.22843 1.87296 1.46133 1.57156 1.27149 1.06642 1.21632 0.99436 0.97526 0.81925 1.21889 1.00483 0.98421 0.95141 1.19023 0.96694 0.96170 0.89457 1.21165 1.35454 1.08204 0.91326 0.92710 1.25032 0.95170 0.95227 0.99054 1.69949 1.38785 1.23211 1.21316 0.86639 0.78922 0.80614 0.81690 1.20244 1.21274 1.20248 1.18884 0.92766 0.98307 0.94216 1.21433 0.99519 0.97784 0.92756 1.21073 0.95794 0.98180 0.97266 1.21176 0.92168 1.00466 0.99095 1.20828 0.86280 1.02424 0.96422 1.98387 1.19458 1.90849 1.95318 1.21256 0.96269 0.98064 0.96011 0.92592 0.90791 0.94085 0.88018 0.92253 0.85495 0.76804 0.91740 0.91747 0.92748 0.92755 0.96291 0.96293 0.92864 0.84819 0.84688 0.84856 0.84503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.34 37.16 0.35 -1.11 16 2 C -0.09 -0.95 5.32 -27.88 -0.15 -1.10 16 3 C 0.00 -0.01 4.73 -102.20 -0.48 -0.50 16 4 C -0.20 -2.14 9.63 -37.50 -0.36 -2.50 16 5 C 0.54 7.49 7.59 -12.96 -0.10 7.40 16 6 O -0.54 -8.89 11.15 5.19 0.06 -8.83 16 7 N -0.72 -10.04 5.55 -61.70 -0.34 -10.38 16 8 C 0.12 2.02 5.67 -4.05 -0.02 2.00 16 9 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 10 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 11 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 15 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.04 -0.36 5.29 -105.06 -0.56 -0.92 16 20 C -0.10 -0.73 9.78 -39.10 -0.38 -1.11 16 21 C -0.10 -0.65 10.03 -39.65 -0.40 -1.05 16 22 C -0.11 -0.75 9.82 -39.43 -0.39 -1.13 16 23 C -0.03 -0.26 6.31 -39.56 -0.25 -0.51 16 24 Cl -0.07 -0.55 28.95 -51.86 -1.50 -2.05 16 25 C -0.10 -0.82 9.51 -39.07 -0.37 -1.19 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.97 6.24 -51.93 -0.32 0.65 16 28 H 0.04 0.36 6.77 -51.93 -0.35 0.01 16 29 H 0.10 1.33 6.07 -51.93 -0.32 1.01 16 30 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.40 4.52 8.45 -40.82 -0.35 4.17 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.13 0.88 6.68 -52.49 -0.35 0.53 16 41 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 43 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -31.14 375.19 -10.52 -41.66 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.30 Total: 0.64 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -3.80 Total: -17.12 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.39 Total: -36.40 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.06 Total: -8.83 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.14 -10.52 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174292338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.073 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds