Wall clock time and date at job start Tue Mar 31 2020 12:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47154 * 2 1 4 4 H 1.08996 * 109.47335 * 304.93033 * 3 2 1 5 5 C 1.50707 * 109.47114 * 184.92533 * 3 2 1 6 6 H 1.07998 * 119.99949 * 269.75276 * 5 3 2 7 7 C 1.37879 * 119.99494 * 89.75392 * 5 3 2 8 8 N 1.31510 * 120.00180 * 0.86542 * 7 5 3 9 9 Si 1.86801 * 119.99764 * 180.86343 * 7 5 3 10 10 H 1.48497 * 109.47160 * 270.00134 * 9 7 5 11 11 H 1.48503 * 109.47066 * 30.00025 * 9 7 5 12 12 H 1.48500 * 109.47276 * 150.00067 * 9 7 5 13 13 N 1.46498 * 109.47055 * 64.92833 * 3 2 1 14 14 C 1.34777 * 120.00234 * 251.90297 * 13 3 2 15 15 O 1.21283 * 119.99831 * 4.73338 * 14 13 3 16 16 C 1.50696 * 120.00058 * 184.72841 * 14 13 3 17 17 C 1.53010 * 115.54979 * 68.57387 * 16 14 13 18 18 C 1.50702 * 109.46824 * 298.82782 * 17 16 14 19 19 C 1.38238 * 120.00258 * 272.03518 * 18 17 16 20 20 C 1.38220 * 120.00942 * 179.74471 * 19 18 17 21 21 C 1.38266 * 120.02764 * 0.55919 * 20 19 18 22 22 C 1.38187 * 120.01244 * 359.69492 * 21 20 19 23 23 C 1.38326 * 120.00894 * 92.31084 * 18 17 16 24 24 Cl 1.73595 * 120.01296 * 0.02562 * 23 18 17 25 25 C 1.53002 * 117.50403 * 282.89964 * 16 14 13 26 26 C 1.53002 * 117.50060 * 214.23937 * 16 14 13 27 27 H 1.08997 * 109.47507 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47105 * 300.00004 * 1 2 3 29 29 H 1.09005 * 109.47449 * 60.00071 * 1 2 3 30 30 H 1.09004 * 109.47105 * 239.99996 * 2 1 3 31 31 H 1.08996 * 109.47233 * 119.99924 * 2 1 3 32 32 H 0.96998 * 119.99910 * 354.57867 * 8 7 5 33 33 H 0.97008 * 120.00089 * 71.90602 * 13 3 2 34 34 H 1.08994 * 109.46792 * 58.82173 * 17 16 14 35 35 H 1.08996 * 109.47122 * 178.82711 * 17 16 14 36 36 H 1.08006 * 119.99581 * 0.02562 * 19 18 17 37 37 H 1.08008 * 119.98621 * 180.24721 * 20 19 18 38 38 H 1.07999 * 119.98873 * 179.72146 * 21 20 19 39 39 H 1.07996 * 120.00714 * 180.02562 * 22 21 20 40 40 H 1.09004 * 117.49157 * 0.02562 * 25 16 14 41 41 H 1.09001 * 117.49912 * 145.01792 * 25 16 14 42 42 H 1.09000 * 117.49882 * 214.98660 * 26 16 14 43 43 H 1.09002 * 117.49760 * 0.02562 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6063 1.9812 -0.8425 5 6 3.5420 1.4442 -0.1220 6 1 4.1560 1.4221 0.7662 7 6 4.1324 1.4741 -1.3676 8 7 3.3849 1.5182 -2.4487 9 14 5.9941 1.4518 -1.5196 10 1 6.5076 2.8452 -1.5168 11 1 6.5755 0.7077 -0.3735 12 1 6.3792 0.7850 -2.7893 13 7 1.6509 2.0980 1.2511 14 6 0.6867 3.0397 1.2470 15 8 0.0817 3.2836 0.2246 16 6 0.3604 3.7894 2.5128 17 6 1.4441 4.7484 3.0099 18 6 2.6997 3.9727 3.3150 19 6 2.8829 3.4195 4.5685 20 6 4.0320 2.7035 4.8469 21 6 5.0040 2.5501 3.8756 22 6 4.8242 3.1071 2.6238 23 6 3.6714 3.8190 2.3427 24 17 3.4454 4.5201 0.7708 25 6 -0.4791 3.0646 3.5669 26 6 -1.0980 4.1934 2.7387 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.4201 1.4505 -2.3744 33 1 2.0873 1.8542 2.0825 34 1 1.6537 5.4904 2.2395 35 1 1.0985 5.2503 3.9136 36 1 2.1261 3.5428 5.3291 37 1 4.1730 2.2681 5.8252 38 1 5.9036 1.9944 4.0952 39 1 5.5833 2.9868 1.8651 40 1 -0.7949 2.0452 3.3448 41 1 -0.2594 3.2711 4.6144 42 1 -1.2853 5.1421 3.2416 43 1 -1.8214 3.9165 1.9718 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190752849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:00 Heat of formation + Delta-G solvation = -8.420636 kcal Electronic energy + Delta-G solvation = -26670.416645 eV Core-core repulsion = 23127.551798 eV Total energy + Delta-G solvation = -3542.864848 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.03846 -38.60606 -36.68005 -35.72838 -35.01623 -32.42800 -32.01474 -31.07268 -30.40377 -27.25870 -26.48677 -23.49508 -22.68270 -22.42080 -22.22537 -21.28192 -19.92153 -18.93227 -17.25192 -16.64385 -16.24143 -15.44311 -15.26020 -14.88222 -14.83995 -13.93283 -13.75256 -13.66902 -13.50883 -13.24864 -13.05096 -12.75291 -12.45076 -12.24012 -12.11815 -11.99753 -11.49278 -11.42078 -11.17033 -11.04263 -10.84132 -10.78116 -10.62390 -10.40528 -10.30042 -10.19121 -10.14464 -9.95172 -9.68841 -8.87762 -8.79815 -8.61126 -8.35755 -8.22676 -7.63899 -6.30347 -4.02435 1.39667 1.49141 2.80689 3.37459 3.41196 3.44130 3.57451 3.81679 3.87124 4.16947 4.53888 4.71607 4.86080 4.95517 5.07972 5.14941 5.21623 5.31282 5.42810 5.56069 5.59772 5.67182 5.73371 5.85753 5.95031 5.98849 6.06143 6.07039 6.09443 6.17695 6.22978 6.30182 6.49272 6.60072 6.62380 6.71527 6.87732 7.00896 7.05566 7.20359 7.43165 7.74743 8.04120 8.45332 8.70473 8.89977 9.25159 9.68654 11.07130 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.011480 B = 0.007648 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.526522 B = 3660.290799 C = 4856.315363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C 0.248 3.752 4 H 0.064 0.936 5 C -0.586 4.586 6 H 0.054 0.946 7 C 0.032 3.968 8 N -0.908 5.908 9 Si 1.055 2.945 10 H -0.286 1.286 11 H -0.288 1.288 12 H -0.286 1.286 13 N -0.692 5.692 14 C 0.544 3.456 15 O -0.553 6.553 16 C -0.147 4.147 17 C -0.039 4.039 18 C -0.090 4.090 19 C -0.107 4.107 20 C -0.127 4.127 21 C -0.112 4.112 22 C -0.097 4.097 23 C -0.004 4.004 24 Cl -0.033 7.033 25 C -0.163 4.163 26 C -0.147 4.147 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.273 0.727 33 H 0.384 0.616 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 3.754 16.080 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C 0.146 3.854 4 H 0.082 0.918 5 C -0.625 4.625 6 H 0.072 0.928 7 C -0.174 4.174 8 N -0.544 5.544 9 Si 0.884 3.116 10 H -0.213 1.213 11 H -0.214 1.214 12 H -0.211 1.211 13 N -0.338 5.338 14 C 0.328 3.672 15 O -0.432 6.432 16 C -0.151 4.151 17 C -0.076 4.076 18 C -0.091 4.091 19 C -0.125 4.125 20 C -0.145 4.145 21 C -0.130 4.130 22 C -0.116 4.116 23 C -0.031 4.031 24 Cl -0.004 7.004 25 C -0.200 4.200 26 C -0.184 4.184 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.216 0.784 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.479 4.060 14.055 14.637 hybrid contribution -0.931 -0.313 1.402 1.712 sum -1.410 3.747 15.457 15.967 Atomic orbital electron populations 1.21766 0.98318 0.98978 1.00986 1.22018 0.92883 1.00715 1.00666 1.18980 0.95330 0.87999 0.83107 0.91787 1.21952 0.90225 1.55421 0.94908 0.92790 1.25517 1.06160 0.93605 0.92115 1.70705 1.07577 1.45604 1.30559 0.83748 0.75245 0.76872 0.75722 1.21312 1.21392 1.21149 1.46402 1.36510 1.38561 1.12332 1.19142 0.80302 0.80079 0.87693 1.90633 1.51958 1.67072 1.33554 1.21535 0.93615 1.02482 0.97431 1.20070 0.90227 0.95750 1.01587 1.19628 0.95434 1.00655 0.93368 1.20848 0.97747 0.98320 0.95563 1.21076 0.94287 0.99771 0.99395 1.21079 0.99451 0.99572 0.92905 1.21102 0.97025 0.96388 0.97063 1.20882 0.95371 0.98985 0.87838 1.98439 1.96694 1.81769 1.23491 1.23035 1.03086 0.97794 0.96128 1.22951 0.94097 0.99052 1.02315 0.94855 0.94223 0.93315 0.92054 0.93945 0.91538 0.78409 0.89628 0.90237 0.85909 0.86096 0.85724 0.84986 0.88682 0.88380 0.88357 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.72 37.15 0.36 -2.53 16 2 C -0.12 -2.75 5.59 -26.74 -0.15 -2.90 16 3 C 0.25 5.91 2.03 -69.08 -0.14 5.77 16 4 H 0.06 1.82 5.47 -51.93 -0.28 1.53 16 5 C -0.59 -14.65 7.30 -34.44 -0.25 -14.90 16 6 H 0.05 1.31 6.44 -52.49 -0.34 0.98 16 7 C 0.03 0.85 5.46 -17.82 -0.10 0.76 16 8 N -0.91 -26.62 13.60 55.43 0.75 -25.87 16 9 Si 1.06 24.27 29.90 -169.99 -5.08 19.19 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.69 -14.13 2.43 -54.93 -0.13 -14.26 16 14 C 0.54 10.99 5.00 -10.99 -0.05 10.93 16 15 O -0.55 -13.52 16.17 5.55 0.09 -13.43 16 16 C -0.15 -2.26 1.96 -155.65 -0.31 -2.56 16 17 C -0.04 -0.54 4.90 -27.88 -0.14 -0.67 16 18 C -0.09 -1.29 3.84 -104.59 -0.40 -1.69 16 19 C -0.11 -1.27 9.71 -39.59 -0.38 -1.65 16 20 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 21 C -0.11 -1.45 10.05 -39.59 -0.40 -1.85 16 22 C -0.10 -1.54 8.52 -39.55 -0.34 -1.88 16 23 C 0.00 -0.06 4.46 -39.50 -0.18 -0.24 16 24 Cl -0.03 -0.67 23.92 -51.86 -1.24 -1.91 16 25 C -0.16 -2.01 9.95 -26.69 -0.27 -2.27 16 26 C -0.15 -1.94 9.77 -26.69 -0.26 -2.20 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.78 7.29 -51.93 -0.38 0.40 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.27 8.17 6.64 -40.82 -0.27 7.89 16 33 H 0.38 7.39 7.02 -40.82 -0.29 7.10 16 34 H 0.09 1.31 6.81 -51.93 -0.35 0.96 16 35 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 36 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 40 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.10 1.50 8.05 -51.93 -0.42 1.08 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -30.19 360.65 -9.77 -39.96 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.19 Total: 10.63 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -3.39 Total: -19.74 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.62 Total: -40.13 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.08 Total: 19.19 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.24 Total: -1.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.19 -9.77 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190752849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.540 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds