Wall clock time and date at job start Tue Mar 31 2020 13:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 120.00206 * 2 1 4 4 N 1.46495 * 109.47292 * 125.00287 * 3 2 1 5 5 C 1.46496 * 120.00124 * 270.00568 * 4 3 2 6 6 C 1.50699 * 109.46880 * 269.99854 * 5 4 3 7 7 H 1.08001 * 120.00345 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00335 * 179.97438 * 6 5 4 9 9 N 1.31523 * 119.99361 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00528 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46752 * 90.00244 * 10 8 6 12 12 H 1.48502 * 109.47610 * 210.00065 * 10 8 6 13 13 H 1.48500 * 109.47185 * 330.00338 * 10 8 6 14 14 C 1.34783 * 119.99953 * 90.00133 * 4 3 2 15 15 O 1.21276 * 119.99835 * 180.02562 * 14 4 3 16 16 C 1.50696 * 119.99881 * 0.02562 * 14 4 3 17 17 H 1.09004 * 115.56566 * 34.31030 * 16 14 4 18 18 C 1.52998 * 117.49877 * 179.97438 * 16 14 4 19 19 H 1.09004 * 117.52058 * 214.96843 * 18 16 14 20 20 C 1.50693 * 117.49785 * 359.97438 * 18 16 14 21 21 C 1.38233 * 120.00479 * 282.97905 * 20 18 16 22 22 C 1.38229 * 120.00295 * 179.72667 * 21 20 18 23 23 C 1.38239 * 120.00202 * 0.25621 * 22 21 20 24 24 C 1.38230 * 119.99860 * 359.97438 * 23 22 21 25 25 C 1.38241 * 120.00093 * 0.03183 * 24 23 22 26 26 C 1.52999 * 117.49974 * 248.62111 * 16 14 4 27 27 F 1.39898 * 117.50190 * 145.02270 * 26 16 14 28 28 F 1.39904 * 117.51800 * 359.97438 * 26 16 14 29 29 H 1.07999 * 119.99844 * 180.02562 * 1 2 3 30 30 H 1.07992 * 120.00044 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.00488 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46853 * 5.00192 * 3 2 1 33 33 H 1.09005 * 109.47266 * 245.00777 * 3 2 1 34 34 H 1.08999 * 109.47402 * 29.99953 * 5 4 3 35 35 H 1.08998 * 109.47181 * 150.00255 * 5 4 3 36 36 H 0.97001 * 119.99637 * 179.97438 * 9 8 6 37 37 H 1.07999 * 119.99602 * 359.97438 * 21 20 18 38 38 H 1.08001 * 120.00396 * 180.27689 * 22 21 20 39 39 H 1.08001 * 120.00081 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.00412 * 180.02562 * 24 23 22 41 41 H 1.08003 * 120.00165 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.5590 1.8648 2.4248 6 6 2.8444 3.3435 2.4804 7 1 3.3041 3.8369 1.6368 8 6 2.5186 4.0666 3.6082 9 7 1.9593 3.4657 4.6358 10 14 2.8730 5.8993 3.6775 11 1 1.7007 6.6500 3.1602 12 1 3.1364 6.2999 5.0830 13 1 4.0635 6.2051 2.8442 14 6 4.2498 0.8661 0.9822 15 8 5.0198 0.8879 1.9189 16 6 4.6972 0.3184 -0.3485 17 1 4.2718 0.8067 -1.2252 18 6 6.1348 -0.1946 -0.4540 19 1 6.6550 -0.0443 -1.4000 20 6 6.9951 -0.1128 0.7806 21 6 7.5411 1.0979 1.1637 22 6 8.3256 1.1739 2.2993 23 6 8.5685 0.0382 3.0489 24 6 8.0264 -1.1735 2.6632 25 6 7.2420 -1.2496 1.5275 26 6 4.9679 -1.1848 -0.4388 27 9 4.6504 -1.8273 -1.6402 28 9 4.7818 -1.9459 0.7203 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9352 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4027 -0.9315 34 1 1.4889 1.6964 2.5460 35 1 3.0992 1.3602 3.2258 36 1 1.7304 3.9743 5.4294 37 1 7.3514 1.9852 0.5780 38 1 8.7485 2.1208 2.6011 39 1 9.1811 0.0977 3.9364 40 1 8.2158 -2.0608 3.2490 41 1 6.8188 -2.1964 1.2259 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359441182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:49 Heat of formation + Delta-G solvation = -39.110673 kcal Electronic energy + Delta-G solvation = -27824.827828 eV Core-core repulsion = 23728.835480 eV Total energy + Delta-G solvation = -4095.992348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.128 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.73377 -47.38293 -39.83386 -38.49063 -36.08528 -35.33880 -33.18781 -32.10208 -30.52603 -30.41090 -27.90395 -25.63552 -24.58509 -23.35240 -22.40158 -21.83564 -20.78115 -19.92761 -18.62362 -17.96291 -16.93012 -16.49942 -16.26168 -16.18804 -15.99642 -15.40662 -14.69724 -14.64718 -14.35446 -14.32248 -14.03372 -13.80443 -13.68126 -13.48563 -13.02032 -12.96582 -12.87264 -12.45691 -12.23519 -12.15603 -11.73698 -11.43137 -11.18816 -11.07299 -10.95388 -10.90920 -10.68449 -10.60515 -10.21360 -10.01927 -9.67391 -9.22253 -9.14595 -8.49316 -8.45736 -8.13759 -7.73376 -6.06549 -4.11590 1.66887 1.82037 2.42165 2.55989 2.87579 3.27554 3.34596 3.37867 3.65128 3.75699 3.95351 4.38469 4.40142 4.49549 4.57084 4.86250 5.00914 5.21678 5.26475 5.27833 5.32041 5.39309 5.44202 5.47644 5.57048 5.63985 5.84932 5.94763 5.99521 6.16047 6.28977 6.37428 6.78713 6.79299 6.84570 6.88703 6.89107 7.03613 7.35655 7.41647 7.48682 7.89099 8.19607 8.30912 8.84327 8.99845 9.53286 11.01529 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.010191 B = 0.005807 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.769950 B = 4820.768858 C = 6799.889668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.168 4.168 3 C 0.134 3.866 4 N -0.585 5.585 5 C 0.250 3.750 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.530 3.470 15 O -0.500 6.500 16 C -0.178 4.178 17 H 0.146 0.854 18 C -0.080 4.080 19 H 0.144 0.856 20 C -0.040 4.040 21 C -0.070 4.070 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.122 4.122 25 C -0.106 4.106 26 C 0.224 3.776 27 F -0.158 7.158 28 F -0.145 7.145 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.911 -8.410 -11.987 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.188 4.188 3 C 0.010 3.990 4 N -0.316 5.316 5 C 0.132 3.868 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.314 3.686 15 O -0.375 6.375 16 C -0.200 4.200 17 H 0.164 0.836 18 C -0.100 4.100 19 H 0.162 0.838 20 C -0.040 4.040 21 C -0.088 4.088 22 C -0.133 4.133 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.124 4.124 26 C 0.187 3.813 27 F -0.138 7.138 28 F -0.125 7.125 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.223 -8.385 -11.245 15.778 hybrid contribution -0.338 0.827 0.032 0.894 sum 6.885 -7.557 -11.214 15.175 Atomic orbital electron populations 1.23811 0.95774 1.01791 1.00431 1.23400 0.96451 0.98899 1.00008 1.20635 0.93166 0.95523 0.89631 1.48161 1.09845 1.59795 1.13762 1.19295 0.95456 0.93744 0.78349 1.21398 1.40663 0.93180 1.01273 0.92457 1.24926 0.95060 0.98691 0.95326 1.69940 1.41931 1.36130 1.05169 0.86515 0.78585 0.85055 0.77370 1.20653 1.21093 1.19906 1.18869 0.83008 0.79552 0.87182 1.90792 1.51654 1.54914 1.40146 1.24063 0.99305 0.94074 1.02583 0.83643 1.22370 0.89615 0.97181 1.00811 0.83837 1.18473 0.96926 0.94413 0.94199 1.20597 0.95574 0.96004 0.96616 1.20955 0.99118 0.98085 0.95161 1.21033 1.00293 0.93047 0.99269 1.20929 0.98569 0.97675 0.96804 1.20919 0.98360 0.97724 0.95410 1.19733 1.05163 0.83576 0.72846 1.93036 1.93670 1.83620 1.43478 1.93059 1.95613 1.77406 1.46411 0.88743 0.88218 0.88018 0.89205 0.90913 0.94899 0.93756 0.92704 0.86709 0.86457 0.86696 0.86631 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 14.32 29.02 0.42 -1.98 16 2 C -0.17 -2.48 9.85 -36.02 -0.35 -2.84 16 3 C 0.13 2.16 5.67 -5.19 -0.03 2.13 16 4 N -0.58 -12.09 2.44 -176.44 -0.43 -12.52 16 5 C 0.25 6.45 5.16 -5.20 -0.03 6.42 16 6 C -0.53 -14.57 9.39 -34.44 -0.32 -14.90 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.75 5.46 -17.81 -0.10 1.66 16 9 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 10 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.53 10.58 7.07 -10.98 -0.08 10.50 16 15 O -0.50 -11.73 12.48 5.56 0.07 -11.66 16 16 C -0.18 -2.61 5.27 -91.77 -0.48 -3.10 16 17 H 0.15 1.69 6.44 -51.93 -0.33 1.35 16 18 C -0.08 -1.07 5.91 -91.75 -0.54 -1.61 16 19 H 0.14 1.39 8.14 -51.93 -0.42 0.96 16 20 C -0.04 -0.62 3.40 -104.62 -0.36 -0.98 16 21 C -0.07 -1.12 8.09 -39.59 -0.32 -1.44 16 22 C -0.12 -1.79 10.05 -39.58 -0.40 -2.18 16 23 C -0.12 -1.75 10.05 -39.58 -0.40 -2.14 16 24 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 25 C -0.11 -1.65 8.69 -39.58 -0.34 -1.99 16 26 C 0.22 3.19 4.95 -26.71 -0.13 3.06 16 27 F -0.16 -2.05 17.60 2.25 0.04 -2.01 16 28 F -0.14 -2.42 14.37 2.25 0.03 -2.39 16 29 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 31 H 0.10 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.09 1.48 7.72 -51.93 -0.40 1.08 16 33 H 0.07 0.95 6.00 -51.93 -0.31 0.64 16 34 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.12 1.71 6.36 -52.48 -0.33 1.38 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -32.33 356.85 -8.16 -40.50 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.10 Total: 3.36 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -3.86 Total: -11.59 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.31 Total: -38.14 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.07 Total: -4.39 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.33 -8.16 -40.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359441182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.386 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds