Wall clock time and date at job start Tue Mar 31 2020 12:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47025 * 2 1 4 4 H 1.09008 * 110.05777 * 302.65944 * 3 2 1 5 5 C 1.54269 * 110.03481 * 64.07207 * 3 2 1 6 6 C 1.54888 * 104.19556 * 142.89481 * 5 3 2 7 7 C 1.54884 * 102.75017 * 322.05893 * 6 5 3 8 8 C 1.53872 * 110.03532 * 181.24156 * 3 2 1 9 9 H 1.09001 * 110.03686 * 121.43014 * 8 3 2 10 10 C 1.50705 * 110.03013 * 0.04752 * 8 3 2 11 11 O 1.21283 * 119.99725 * 272.89381 * 10 8 3 12 12 N 1.34767 * 119.99910 * 92.89770 * 10 8 3 13 13 C 1.39157 * 119.99954 * 184.40015 * 12 10 8 14 14 C 1.38604 * 120.21069 * 330.77357 * 13 12 10 15 15 C 1.38185 * 120.17690 * 179.97438 * 14 13 12 16 16 C 1.39006 * 120.59803 * 0.04754 * 15 14 13 17 17 Cl 1.73599 * 119.78856 * 179.97438 * 16 15 14 18 18 C 1.37545 * 120.42180 * 359.97438 * 16 15 14 19 19 C 1.40739 * 119.80949 * 359.66760 * 18 16 15 20 20 C 1.41077 * 120.29129 * 180.33852 * 19 18 16 21 21 H 1.07991 * 120.00046 * 148.23316 * 20 19 18 22 22 C 1.39948 * 119.99813 * 328.22979 * 20 19 18 23 23 N 1.30854 * 120.00398 * 347.72797 * 22 20 19 24 24 Si 1.86799 * 119.99937 * 167.73277 * 22 20 19 25 25 H 1.48497 * 109.46910 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47257 * 119.99663 * 24 22 20 27 27 H 1.48496 * 109.47349 * 239.99714 * 24 22 20 28 28 H 1.08997 * 109.47505 * 300.00604 * 1 2 3 29 29 H 1.09000 * 109.47055 * 60.00785 * 1 2 3 30 30 H 1.09003 * 109.47146 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47395 * 239.99871 * 2 1 3 32 32 H 1.09000 * 109.47055 * 119.99215 * 2 1 3 33 33 H 1.09005 * 110.48158 * 24.22138 * 5 3 2 34 34 H 1.09001 * 110.60202 * 261.63036 * 5 3 2 35 35 H 1.08997 * 110.75404 * 80.37825 * 6 5 3 36 36 H 1.09001 * 110.75861 * 203.74497 * 6 5 3 37 37 H 1.08999 * 110.48538 * 156.61987 * 7 6 5 38 38 H 1.09002 * 110.48929 * 279.26629 * 7 6 5 39 39 H 0.97001 * 120.00552 * 4.39523 * 12 10 8 40 40 H 1.08007 * 119.90939 * 0.02562 * 14 13 12 41 41 H 1.07995 * 119.70695 * 180.02562 * 15 14 13 42 42 H 1.08000 * 120.09398 * 179.97438 * 18 16 15 43 43 H 0.97001 * 120.00307 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6436 1.9792 -0.8621 5 6 1.6186 2.1520 1.3035 6 6 2.8271 3.0561 1.6515 7 6 4.0381 2.1759 1.2542 8 6 3.5783 1.4578 -0.0313 9 1 3.9285 2.0018 -0.9085 10 6 4.1081 0.0471 -0.0535 11 8 4.2932 -0.5475 0.9872 12 7 4.3765 -0.5534 -1.2297 13 6 4.7782 -1.8855 -1.2551 14 6 5.4721 -2.4252 -0.1836 15 6 5.8703 -3.7482 -0.2093 16 6 5.5825 -4.5526 -1.3059 17 17 6.0932 -6.2117 -1.3163 18 6 4.8956 -4.0423 -2.3828 19 6 4.4752 -2.6992 -2.3718 20 6 3.7637 -2.1672 -3.4678 21 1 3.0262 -1.3946 -3.3091 22 6 4.0139 -2.6408 -4.7607 23 7 5.0599 -3.3925 -4.9912 24 14 2.8547 -2.1998 -6.1575 25 1 1.7566 -1.3456 -5.6384 26 1 3.6024 -1.4620 -7.2072 27 1 2.2832 -3.4417 -6.7374 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 1.4465 1.4235 2.0958 34 1 0.7254 2.7551 1.1404 35 1 2.8060 3.9729 1.0623 36 1 2.8467 3.2814 2.7178 37 1 4.9111 2.7967 1.0529 38 1 4.2567 1.4513 2.0386 39 1 4.2895 -0.0573 -2.0587 40 1 5.7016 -1.8103 0.6741 41 1 6.4102 -4.1611 0.6299 42 1 4.6751 -4.6718 -3.2322 43 1 5.2335 -3.7205 -5.8875 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410968685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:17 Heat of formation + Delta-G solvation = -64.198481 kcal Electronic energy + Delta-G solvation = -25370.220520 eV Core-core repulsion = 21824.936963 eV Total energy + Delta-G solvation = -3545.283557 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.124 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.73538 -39.70191 -38.21706 -37.16868 -35.52480 -35.26547 -34.00943 -31.65393 -31.05545 -29.33644 -28.42359 -27.18432 -24.21761 -23.59902 -23.02573 -21.72253 -21.39280 -20.03498 -19.29180 -18.16689 -17.79507 -17.12857 -16.79432 -16.34568 -15.91279 -15.85384 -15.35636 -15.07790 -14.71876 -14.48675 -14.32249 -14.17261 -14.01319 -13.49179 -13.31761 -13.23219 -12.93489 -12.85915 -12.60572 -12.41224 -12.28724 -12.20061 -12.10525 -11.93851 -11.83303 -11.73952 -11.44920 -11.43260 -11.40429 -11.30332 -11.08488 -10.76648 -10.32006 -9.42641 -8.80816 -8.51312 -6.38106 0.65091 0.92548 1.42811 1.48081 1.52999 1.56205 1.83207 2.20912 2.46437 2.70482 3.53652 3.56214 3.68880 3.76190 4.12948 4.24402 4.38088 4.43960 4.49694 4.53858 4.58068 4.63310 4.71875 4.80926 4.83194 4.89613 4.97971 5.00823 5.08745 5.17792 5.19664 5.24664 5.25164 5.26828 5.31149 5.41762 5.47358 5.54212 5.58111 5.69975 5.87618 5.98263 6.14127 6.48229 6.73626 6.84273 6.95473 7.44229 8.34416 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.010982 B = 0.004805 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.951799 B = 5826.270536 C = 7482.157757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C -0.070 4.070 4 H 0.100 0.900 5 C -0.114 4.114 6 C -0.114 4.114 7 C -0.114 4.114 8 C -0.107 4.107 9 H 0.112 0.888 10 C 0.513 3.487 11 O -0.571 6.571 12 N -0.638 5.638 13 C 0.030 3.970 14 C -0.099 4.099 15 C -0.217 4.217 16 C -0.026 4.026 17 Cl -0.104 7.104 18 C -0.158 4.158 19 C 0.085 3.915 20 C -0.482 4.482 21 H 0.089 0.911 22 C 0.039 3.961 23 N -0.825 5.825 24 Si 0.979 3.021 25 H -0.251 1.251 26 H -0.267 1.267 27 H -0.274 1.274 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.412 0.588 40 H 0.128 0.872 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.395 12.401 4.377 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C -0.089 4.089 4 H 0.119 0.881 5 C -0.152 4.152 6 C -0.151 4.151 7 C -0.152 4.152 8 C -0.128 4.128 9 H 0.130 0.870 10 C 0.303 3.697 11 O -0.451 6.451 12 N -0.280 5.280 13 C -0.065 4.065 14 C -0.120 4.120 15 C -0.237 4.237 16 C -0.053 4.053 17 Cl -0.076 7.076 18 C -0.179 4.179 19 C 0.081 3.919 20 C -0.511 4.511 21 H 0.107 0.893 22 C -0.176 4.176 23 N -0.451 5.451 24 Si 0.800 3.200 25 H -0.174 1.174 26 H -0.192 1.192 27 H -0.199 1.199 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.249 0.751 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.129 0.871 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.115 11.767 4.914 14.142 hybrid contribution 0.090 -0.752 -1.130 1.360 sum -6.024 11.016 3.784 13.113 Atomic orbital electron populations 1.21699 0.94073 1.01383 1.02725 1.21770 0.97648 0.96791 1.00675 1.21745 0.91060 0.95517 1.00589 0.88141 1.22435 0.98947 0.98175 0.95598 1.22465 0.92838 0.97920 1.01881 1.22368 0.99367 0.98305 0.95132 1.22152 0.97644 0.90634 1.02410 0.87010 1.21199 0.76104 0.89834 0.82609 1.90563 1.54090 1.66915 1.33528 1.43086 1.65019 1.10062 1.09861 1.17985 1.04581 0.85073 0.98858 1.20943 0.97674 0.94983 0.98363 1.20423 1.10229 0.94402 0.98662 1.20845 1.02916 0.84189 0.97301 1.98245 1.90292 1.20272 1.98764 1.20937 1.04213 0.95651 0.97085 1.17571 0.91855 0.89988 0.92468 1.19525 1.20097 1.20665 0.90859 0.89293 1.26680 0.95586 0.92866 1.02476 1.69864 1.23872 1.26954 1.24412 0.85189 0.78782 0.78988 0.77042 1.17450 1.19192 1.19913 0.91295 0.91520 0.93956 0.93725 0.94144 0.92809 0.89342 0.89384 0.90653 0.90248 0.92382 0.75055 0.85419 0.86415 0.87089 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.73 71.98 0.70 -2.58 16 2 C -0.13 -3.77 4.11 30.59 0.13 -3.65 16 3 C -0.07 -1.56 2.97 -10.07 -0.03 -1.59 16 4 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 5 C -0.11 -2.09 5.36 31.67 0.17 -1.92 16 6 C -0.11 -1.87 6.91 31.88 0.22 -1.64 16 7 C -0.11 -2.54 6.31 31.67 0.20 -2.34 16 8 C -0.11 -2.65 3.29 -10.81 -0.04 -2.69 16 9 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 10 C 0.51 18.07 4.59 87.66 0.40 18.48 16 11 O -0.57 -24.09 12.03 -3.04 -0.04 -24.12 16 12 N -0.64 -24.53 4.51 -302.31 -1.36 -25.89 16 13 C 0.03 1.42 6.43 38.86 0.25 1.67 16 14 C -0.10 -4.68 8.73 22.34 0.20 -4.48 16 15 C -0.22 -10.07 9.82 22.44 0.22 -9.85 16 16 C -0.03 -1.23 6.31 22.29 0.14 -1.09 16 17 Cl -0.10 -4.33 28.94 -2.72 -0.08 -4.41 16 18 C -0.16 -8.14 8.40 22.72 0.19 -7.95 16 19 C 0.09 4.30 5.51 -21.18 -0.12 4.18 16 20 C -0.48 -23.00 8.24 23.38 0.19 -22.80 16 21 H 0.09 3.95 7.45 -2.91 -0.02 3.93 16 22 C 0.04 1.82 5.20 85.25 0.44 2.26 16 23 N -0.83 -40.76 11.14 21.83 0.24 -40.52 16 24 Si 0.98 35.07 29.58 68.60 2.03 37.10 16 25 H -0.25 -8.55 7.11 99.48 0.71 -7.85 16 26 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 27 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 28 H 0.07 1.35 7.35 -2.39 -0.02 1.33 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 1.52 7.04 -2.39 -0.02 1.50 16 32 H 0.04 1.41 6.98 -2.39 -0.02 1.39 16 33 H 0.05 1.16 7.79 -2.38 -0.02 1.14 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.65 6.88 -2.39 -0.02 1.63 16 39 H 0.41 14.23 7.84 -92.71 -0.73 13.50 16 40 H 0.13 5.98 5.77 -2.91 -0.02 5.96 16 41 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 42 H 0.11 6.01 6.51 -2.91 -0.02 5.99 16 43 H 0.29 13.02 8.30 -92.71 -0.77 12.25 16 Total: -1.00 -58.89 354.52 4.36 -54.53 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: 0.30 Total: 39.30 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 3.27 Total: -35.99 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -1.12 Total: -66.41 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.04 Total: -24.12 kcal Atomic # 14 Polarization: 35.07 SS G_CDS: 2.03 Total: 37.10 kcal Atomic # 17 Polarization: -4.33 SS G_CDS: -0.08 Total: -4.41 kcal Total: -58.89 4.36 -54.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410968685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.670 kcal (2) G-P(sol) polarization free energy of solvation -58.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds