Wall clock time and date at job start Tue Mar 31 2020 12:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 C 1.50696 * 109.47432 * 120.00481 * 2 1 3 5 5 H 1.08004 * 120.00484 * 114.23170 * 4 2 1 6 6 C 1.37882 * 120.00211 * 294.23859 * 4 2 1 7 7 N 1.31513 * 120.00140 * 209.34331 * 6 4 2 8 8 Si 1.86797 * 119.99592 * 29.34242 * 6 4 2 9 9 H 1.48506 * 109.46875 * 180.02562 * 8 6 4 10 10 H 1.48496 * 109.47616 * 60.00384 * 8 6 4 11 11 H 1.48503 * 109.47427 * 300.00143 * 8 6 4 12 12 C 1.53004 * 109.46905 * 240.00458 * 2 1 3 13 13 N 1.46498 * 109.47038 * 59.99748 * 12 2 1 14 14 C 1.34779 * 119.99708 * 179.97438 * 13 12 2 15 15 O 1.21274 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99589 * 180.02562 * 14 13 12 17 17 H 1.08995 * 115.54947 * 34.41979 * 16 14 13 18 18 C 1.52999 * 117.49762 * 248.74811 * 16 14 13 19 19 C 1.53000 * 117.49451 * 180.08859 * 16 14 13 20 20 H 1.09004 * 117.50342 * 359.97438 * 19 16 14 21 21 C 1.50703 * 117.49734 * 214.97942 * 19 16 14 22 22 C 1.38245 * 119.98619 * 299.72765 * 21 19 16 23 23 C 1.38213 * 120.00953 * 179.73000 * 22 21 19 24 24 C 1.38355 * 119.98866 * 0.54252 * 23 22 21 25 25 Cl 1.73601 * 120.01053 * 179.75184 * 24 23 22 26 26 C 1.38353 * 119.97196 * 359.73051 * 24 23 22 27 27 C 1.38207 * 119.98635 * 0.02562 * 26 24 23 28 28 H 1.09005 * 109.47219 * 295.40031 * 1 2 3 29 29 H 1.08998 * 109.47325 * 55.40435 * 1 2 3 30 30 H 1.09006 * 109.47262 * 175.40559 * 1 2 3 31 31 H 1.09001 * 109.47398 * 185.31227 * 3 2 1 32 32 H 1.09000 * 109.47333 * 305.32309 * 3 2 1 33 33 H 1.09006 * 109.46401 * 65.31877 * 3 2 1 34 34 H 0.96996 * 119.99717 * 354.99375 * 7 6 4 35 35 H 1.09000 * 109.46887 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.47138 * 299.99834 * 12 2 1 37 37 H 0.97001 * 120.00129 * 0.02562 * 13 12 2 38 38 H 1.09003 * 117.49936 * 359.97438 * 18 16 14 39 39 H 1.08995 * 117.49741 * 145.02421 * 18 16 14 40 40 H 1.07999 * 119.99207 * 359.97438 * 22 21 19 41 41 H 1.08002 * 120.00596 * 180.27621 * 23 22 21 42 42 H 1.07996 * 120.00208 * 179.97438 * 26 24 23 43 43 H 1.08004 * 119.99648 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5743 -1.6397 1.1340 6 6 1.8000 -0.1744 2.4792 7 7 2.6478 -0.3988 3.4593 8 14 0.2811 0.8707 2.7791 9 1 0.2638 1.3246 4.1930 10 1 -0.9359 0.0663 2.5021 11 1 0.3082 2.0528 1.8806 12 6 2.0399 -0.7212 -1.2493 13 7 1.5515 -0.0305 -2.4454 14 6 1.8775 -0.4906 -3.6696 15 8 2.5747 -1.4766 -3.7809 16 6 1.3755 0.2203 -4.9000 17 1 1.2903 1.3035 -4.8151 18 6 0.3394 -0.5046 -5.7613 19 6 1.7785 -0.3523 -6.2604 20 1 2.4071 -1.2429 -6.2655 21 6 2.0267 0.6247 -7.3806 22 6 1.0132 1.4656 -7.8012 23 6 1.2419 2.3657 -8.8248 24 6 2.4820 2.4173 -9.4361 25 17 2.7679 3.5432 -10.7262 26 6 3.4942 1.5716 -9.0185 27 6 3.2658 0.6754 -7.9915 28 1 -0.3634 0.4408 0.9284 29 1 -0.3634 0.5835 -0.8459 30 1 -0.3634 -1.0244 -0.0823 31 1 3.1258 1.4440 -0.0951 32 1 1.6010 1.9831 -0.8385 33 1 1.7565 1.9280 0.9339 34 1 3.3971 -0.9998 3.3242 35 1 3.1299 -0.7208 -1.2496 36 1 1.6766 -1.7489 -1.2494 37 1 0.9941 0.7584 -2.3563 38 1 0.0212 -1.4959 -5.4383 39 1 -0.4272 0.1019 -6.2435 40 1 0.0438 1.4219 -7.3272 41 1 0.4514 3.0257 -9.1503 42 1 4.4622 1.6111 -9.4956 43 1 4.0559 0.0154 -7.6651 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412421814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:20 Heat of formation + Delta-G solvation = 4.500812 kcal Electronic energy + Delta-G solvation = -23781.748053 eV Core-core repulsion = 20239.443522 eV Total energy + Delta-G solvation = -3542.304532 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41139 -39.32257 -37.35109 -36.72419 -35.93041 -33.35943 -31.51552 -31.47098 -30.70542 -26.61347 -26.34815 -24.69705 -24.20302 -23.47056 -22.84471 -20.80485 -19.88881 -19.12170 -17.89006 -17.30636 -16.64521 -15.84001 -15.68181 -15.28220 -15.08657 -14.78816 -14.44976 -14.04196 -13.90056 -13.82425 -13.24727 -12.87788 -12.76896 -12.62096 -12.35614 -12.14403 -12.08536 -12.01266 -11.84017 -11.59154 -11.35549 -11.16057 -10.81866 -10.67786 -10.62656 -10.21607 -10.11158 -9.96153 -9.65190 -9.42057 -9.10507 -8.93001 -8.79102 -8.56200 -8.07279 -6.58999 -4.11182 0.70766 0.91508 1.77318 2.64856 3.14646 3.29394 3.35196 3.50344 3.58190 3.80932 4.29604 4.38466 4.40324 4.50027 4.55208 4.68083 4.88117 4.93847 5.10478 5.11639 5.12988 5.31697 5.38910 5.58631 5.70435 5.74755 5.81285 5.85487 5.93237 6.02731 6.06740 6.22570 6.35388 6.40652 6.46373 6.52114 6.62060 6.68414 6.75496 6.94812 7.23192 7.44330 7.88804 8.10345 8.31127 8.53657 8.84674 9.53424 10.81225 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.002186 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.955559 B =12805.527568 C =13047.122734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.035 3.965 3 C -0.141 4.141 4 C -0.610 4.610 5 H 0.059 0.941 6 C 0.039 3.961 7 N -0.888 5.888 8 Si 1.058 2.942 9 H -0.299 1.299 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.143 3.857 13 N -0.715 5.715 14 C 0.534 3.466 15 O -0.549 6.549 16 C -0.173 4.173 17 H 0.124 0.876 18 C -0.144 4.144 19 C -0.090 4.090 20 H 0.130 0.870 21 C -0.043 4.043 22 C -0.109 4.109 23 C -0.107 4.107 24 C -0.041 4.041 25 Cl -0.075 7.075 26 C -0.107 4.107 27 C -0.097 4.097 28 H 0.042 0.958 29 H 0.027 0.973 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.021 0.979 33 H 0.056 0.944 34 H 0.271 0.729 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.398 0.602 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.548 6.505 -25.679 26.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.034 3.966 3 C -0.199 4.199 4 C -0.647 4.647 5 H 0.077 0.923 6 C -0.168 4.168 7 N -0.520 5.520 8 Si 0.892 3.108 9 H -0.227 1.227 10 H -0.215 1.215 11 H -0.204 1.204 12 C 0.020 3.980 13 N -0.365 5.365 14 C 0.319 3.681 15 O -0.428 6.428 16 C -0.194 4.194 17 H 0.142 0.858 18 C -0.181 4.181 19 C -0.109 4.109 20 H 0.148 0.852 21 C -0.043 4.043 22 C -0.127 4.127 23 C -0.126 4.126 24 C -0.067 4.067 25 Cl -0.046 7.046 26 C -0.126 4.126 27 C -0.115 4.115 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.232 0.768 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.749 6.798 -24.673 26.030 hybrid contribution 0.535 -0.391 -1.158 1.334 sum -4.214 6.407 -25.831 26.946 Atomic orbital electron populations 1.22356 0.99080 1.00403 0.98708 1.18641 0.91390 0.93059 0.93531 1.22232 1.00398 0.97637 0.99624 1.21596 1.41284 1.11376 0.90478 0.92311 1.25721 1.00014 0.98262 0.92842 1.70872 1.12133 1.31398 1.37565 0.84049 0.75961 0.76326 0.74503 1.22737 1.21515 1.20427 1.21551 0.98525 0.95620 0.82278 1.46258 1.52516 1.31842 1.05920 1.19510 0.80389 0.84222 0.83967 1.90677 1.38495 1.26758 1.86825 1.22412 1.05949 1.00431 0.90597 0.85842 1.23143 0.91629 1.02452 1.00904 1.21086 0.99382 0.99757 0.90629 0.85236 1.19279 0.93681 0.95753 0.95589 1.21064 0.99539 0.95229 0.96829 1.21027 0.95671 0.99433 0.96443 1.20957 0.95998 0.95702 0.94051 1.98373 1.96398 1.60751 1.49087 1.21060 0.98716 0.95268 0.97527 1.21016 0.96869 0.98405 0.95189 0.93929 0.95436 0.93116 0.93577 0.96045 0.92491 0.91860 0.92194 0.92336 0.76751 0.87506 0.87477 0.84773 0.84877 0.84812 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 7.74 37.16 0.29 -2.67 16 2 C 0.04 0.77 0.50 -155.66 -0.08 0.69 16 3 C -0.14 -2.92 7.90 37.16 0.29 -2.62 16 4 C -0.61 -16.30 8.42 -34.44 -0.29 -16.59 16 5 H 0.06 1.71 7.99 -52.48 -0.42 1.29 16 6 C 0.04 1.08 5.06 -17.82 -0.09 0.99 16 7 N -0.89 -26.34 13.70 55.43 0.76 -25.58 16 8 Si 1.06 24.67 23.53 -169.99 -4.00 20.67 16 9 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.29 -6.34 6.69 56.52 0.38 -5.97 16 11 H -0.28 -5.87 5.73 56.52 0.32 -5.54 16 12 C 0.14 2.88 4.51 -4.04 -0.02 2.87 16 13 N -0.72 -11.59 5.02 -60.29 -0.30 -11.89 16 14 C 0.53 8.43 7.61 -10.98 -0.08 8.34 16 15 O -0.55 -10.75 16.26 5.56 0.09 -10.66 16 16 C -0.17 -1.92 5.82 -91.77 -0.53 -2.46 16 17 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 18 C -0.14 -1.30 9.57 -26.69 -0.26 -1.55 16 19 C -0.09 -0.92 5.56 -91.73 -0.51 -1.43 16 20 H 0.13 1.50 7.67 -51.93 -0.40 1.10 16 21 C -0.04 -0.39 5.61 -104.62 -0.59 -0.98 16 22 C -0.11 -0.86 9.30 -39.59 -0.37 -1.23 16 23 C -0.11 -0.85 9.83 -39.55 -0.39 -1.24 16 24 C -0.04 -0.35 6.32 -39.50 -0.25 -0.60 16 25 Cl -0.07 -0.62 28.96 -51.86 -1.50 -2.12 16 26 C -0.11 -0.90 9.83 -39.55 -0.39 -1.29 16 27 C -0.10 -0.86 9.74 -39.59 -0.39 -1.24 16 28 H 0.04 0.89 2.27 -51.93 -0.12 0.77 16 29 H 0.03 0.45 7.00 -51.93 -0.36 0.08 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.36 7.02 -51.93 -0.36 -0.01 16 33 H 0.06 1.25 4.40 -51.93 -0.23 1.02 16 34 H 0.27 8.02 8.73 -40.82 -0.36 7.67 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.40 5.55 6.24 -40.82 -0.25 5.29 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.11 0.70 6.17 -51.93 -0.32 0.38 16 40 H 0.13 0.82 6.01 -52.49 -0.32 0.50 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 356.82 15.07 5.38 5.38 Total: -1.00 -30.58 356.82 -9.06 -39.64 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.84 Total: 5.57 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -3.65 Total: -21.01 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.46 Total: -37.47 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -4.00 Total: 20.67 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.58 -9.06 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412421814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.143 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds