Wall clock time and date at job start Tue Mar 31 2020 13:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00227 * 2 1 4 4 O 1.42904 * 109.47275 * 134.99833 * 3 2 1 5 5 C 1.35921 * 117.00134 * 179.97438 * 4 3 2 6 6 C 1.38708 * 120.06156 * 0.25367 * 5 4 3 7 7 C 1.38146 * 119.95634 * 180.25327 * 6 5 4 8 8 C 1.38270 * 120.08047 * 359.49086 * 7 6 5 9 9 C 1.50700 * 119.94563 * 180.27770 * 8 7 6 10 10 N 1.46905 * 109.47235 * 92.43109 * 9 8 7 11 11 C 1.46903 * 110.99992 * 288.01390 * 10 9 8 12 12 C 1.50702 * 109.46847 * 299.27146 * 11 10 9 13 13 C 1.31003 * 119.99990 * 123.00602 * 12 11 10 14 14 C 1.46892 * 110.99793 * 164.05737 * 10 9 8 15 15 C 1.50702 * 109.47115 * 189.99958 * 14 10 9 16 16 H 1.08007 * 119.99695 * 0.02562 * 15 14 10 17 17 C 1.37872 * 120.00327 * 180.02562 * 15 14 10 18 18 N 1.31509 * 120.00077 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00118 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47342 * 89.99654 * 19 17 15 21 21 H 1.48499 * 109.46839 * 209.99786 * 19 17 15 22 22 H 1.48504 * 109.46959 * 329.99779 * 19 17 15 23 23 C 1.38250 * 120.11696 * 0.25878 * 8 7 6 24 24 C 1.38252 * 120.04309 * 359.97438 * 23 8 7 25 25 Cl 1.73600 * 120.04201 * 180.02562 * 24 23 8 26 26 H 1.08002 * 120.00454 * 179.97438 * 1 2 3 27 27 H 1.08007 * 119.99659 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.99659 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47317 * 14.99714 * 3 2 1 30 30 H 1.08999 * 109.47127 * 255.00133 * 3 2 1 31 31 H 1.08003 * 120.01670 * 0.02562 * 6 5 4 32 32 H 1.08003 * 119.95990 * 179.77199 * 7 6 5 33 33 H 1.09002 * 109.47266 * 212.43353 * 9 8 7 34 34 H 1.09001 * 109.47026 * 332.43406 * 9 8 7 35 35 H 1.08996 * 109.47106 * 59.26626 * 11 10 9 36 36 H 1.08996 * 109.46954 * 179.26969 * 11 10 9 37 37 H 1.07999 * 119.99699 * 302.99777 * 12 11 10 38 38 H 1.08000 * 119.99676 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.00015 * 359.97438 * 13 12 11 40 40 H 1.09006 * 109.47512 * 309.99994 * 14 10 9 41 41 H 1.08999 * 109.47442 * 70.00549 * 14 10 9 42 42 H 0.97000 * 120.00243 * 179.97438 * 18 17 15 43 43 H 1.08005 * 119.98064 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9099 2.3450 1.0783 6 6 3.6570 3.4681 0.3044 7 6 4.4576 4.5869 0.4300 8 6 5.5041 4.5923 1.3337 9 6 6.3717 5.8166 1.4727 10 7 5.8381 6.6766 2.5375 11 6 4.5935 7.3307 2.1118 12 6 4.8659 8.1924 0.9059 13 6 4.1972 7.9969 -0.2035 14 6 6.8351 7.6680 2.9626 15 6 6.3516 8.3642 4.2087 16 1 5.3990 8.0965 4.6417 17 6 7.1252 9.3428 4.7960 18 7 8.2853 9.6684 4.2690 19 14 6.5261 10.2052 6.3410 20 1 6.9984 9.4627 7.5371 21 1 7.0620 11.5897 6.3743 22 1 5.0417 10.2487 6.3396 23 6 5.7559 3.4765 2.1103 24 6 4.9608 2.3525 1.9852 25 17 5.2765 0.9517 2.9609 26 1 -0.5401 -0.9353 -0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.8499 -0.9354 0.0004 29 1 1.3856 2.1161 0.2659 30 1 2.4755 1.4867 -0.9926 31 1 2.8370 3.4665 -0.3984 32 1 4.2630 5.4600 -0.1751 33 1 7.3884 5.5149 1.7246 34 1 6.3785 6.3659 0.5312 35 1 3.8534 6.5723 1.8566 36 1 4.2131 7.9511 2.9233 37 1 5.6124 8.9713 0.9563 38 1 4.3922 8.6148 -1.0676 39 1 3.4509 7.2178 -0.2540 40 1 7.7805 7.1667 3.1701 41 1 6.9792 8.4016 2.1695 42 1 8.8294 10.3571 4.6820 43 1 6.5742 3.4830 2.8152 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430086749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:56 Heat of formation + Delta-G solvation = 13.402152 kcal Electronic energy + Delta-G solvation = -24129.413861 eV Core-core repulsion = 20587.495320 eV Total energy + Delta-G solvation = -3541.918541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32122 -39.63469 -38.18299 -37.26876 -35.04245 -34.86002 -33.80156 -31.82522 -31.80028 -28.96031 -27.89708 -27.13562 -25.35460 -23.83287 -23.05770 -21.98250 -20.86362 -20.35863 -19.21394 -18.40077 -17.55189 -17.02456 -16.90939 -16.74456 -16.52324 -15.81997 -15.60713 -15.41862 -15.33762 -14.85307 -14.52961 -14.47756 -14.06775 -13.80032 -13.64330 -13.27949 -13.15231 -12.88755 -12.62395 -12.58179 -12.48957 -12.29050 -12.20036 -12.13085 -11.96914 -11.86719 -11.74304 -11.67832 -11.26962 -10.59906 -10.41163 -10.23231 -9.85170 -9.14218 -8.88853 -8.17535 -6.26148 0.16329 0.29885 1.13158 1.22208 1.41090 1.42090 1.42458 1.52935 2.32385 2.40897 2.57782 3.15345 3.55082 3.70494 3.81778 3.97860 4.02057 4.10919 4.14597 4.27418 4.28975 4.32977 4.36714 4.55126 4.59479 4.64677 4.77034 4.84845 4.96911 4.99727 5.06877 5.11476 5.18467 5.28233 5.38011 5.57203 5.62394 5.64196 5.66764 5.72984 5.77008 5.86088 6.11219 6.31442 6.37931 6.67311 6.89780 7.42802 8.92851 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.015834 B = 0.002999 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.870214 B = 9332.699902 C =10104.927848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.176 4.176 3 C 0.078 3.922 4 O -0.316 6.316 5 C 0.130 3.870 6 C -0.189 4.189 7 C -0.069 4.069 8 C -0.095 4.095 9 C 0.095 3.905 10 N -0.532 5.532 11 C 0.091 3.909 12 C -0.191 4.191 13 C -0.174 4.174 14 C 0.207 3.793 15 C -0.517 4.517 16 H 0.059 0.941 17 C 0.004 3.996 18 N -0.933 5.933 19 Si 0.962 3.038 20 H -0.276 1.276 21 H -0.283 1.283 22 H -0.265 1.265 23 C -0.063 4.063 24 C -0.082 4.082 25 Cl -0.068 7.068 26 H 0.120 0.880 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.167 0.833 32 H 0.147 0.853 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.000 1.000 41 H -0.022 1.022 42 H 0.263 0.737 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.496 -16.269 -13.002 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.194 4.194 3 C 0.004 3.996 4 O -0.230 6.230 5 C 0.083 3.917 6 C -0.207 4.207 7 C -0.087 4.087 8 C -0.096 4.096 9 C -0.032 4.032 10 N -0.255 5.255 11 C -0.036 4.036 12 C -0.211 4.211 13 C -0.212 4.212 14 C 0.081 3.919 15 C -0.555 4.555 16 H 0.078 0.922 17 C -0.194 4.194 18 N -0.574 5.574 19 Si 0.787 3.213 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.189 1.189 23 C -0.082 4.082 24 C -0.109 4.109 25 Cl -0.040 7.040 26 H 0.138 0.862 27 H 0.128 0.872 28 H 0.134 0.866 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.184 0.816 32 H 0.164 0.836 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.135 0.865 40 H 0.018 0.982 41 H -0.004 1.004 42 H 0.072 0.928 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.413 -16.776 -12.363 25.338 hybrid contribution 0.706 1.248 0.377 1.482 sum -13.707 -15.528 -11.986 23.931 Atomic orbital electron populations 1.24111 0.94977 1.03729 0.96775 1.22667 0.96164 0.97376 1.03187 1.22128 0.87362 0.97903 0.92189 1.86149 1.42586 1.34782 1.59523 1.18686 0.90650 0.87579 0.94780 1.21400 1.03825 0.92348 1.03156 1.21247 0.92643 0.98297 0.96531 1.19635 0.98260 0.94307 0.97418 1.20931 0.96690 0.91514 0.94092 1.62291 1.05730 1.22126 1.35339 1.21222 0.92639 0.95350 0.94430 1.23547 1.00292 0.99878 0.97386 1.23980 0.99218 1.01560 0.96424 1.19392 0.89862 0.88556 0.94046 1.21440 1.04864 1.18770 1.10450 0.92239 1.25810 0.95046 0.97801 1.00751 1.70070 1.12800 1.32555 1.41987 0.85488 0.78818 0.77510 0.79450 1.20167 1.20864 1.18947 1.20803 0.98649 0.90626 0.98104 1.20226 0.99804 0.91136 0.99717 1.98338 1.95236 1.40609 1.69767 0.86198 0.87183 0.86642 0.90121 0.89509 0.81580 0.83573 0.91655 0.93361 0.89743 0.91911 0.90221 0.87507 0.86471 0.98226 1.00436 0.92832 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 14.31 67.78 0.97 -0.57 16 2 C -0.18 -2.32 9.89 25.65 0.25 -2.06 16 3 C 0.08 1.14 5.15 71.24 0.37 1.51 16 4 O -0.32 -7.14 9.58 -92.66 -0.89 -8.03 16 5 C 0.13 3.18 6.68 22.52 0.15 3.33 16 6 C -0.19 -3.84 9.04 22.36 0.20 -3.63 16 7 C -0.07 -1.61 8.26 22.26 0.18 -1.43 16 8 C -0.10 -2.80 4.99 -19.85 -0.10 -2.89 16 9 C 0.10 3.31 4.97 85.56 0.43 3.74 16 10 N -0.53 -22.29 4.65 -909.94 -4.23 -26.52 16 11 C 0.09 3.36 5.39 85.56 0.46 3.82 16 12 C -0.19 -6.41 7.43 25.64 0.19 -6.22 16 13 C -0.17 -4.26 13.43 67.78 0.91 -3.35 16 14 C 0.21 10.79 4.55 85.56 0.39 11.18 16 15 C -0.52 -29.03 8.47 25.60 0.22 -28.81 16 16 H 0.06 3.31 7.12 -2.91 -0.02 3.29 16 17 C 0.00 0.21 5.46 84.65 0.46 0.68 16 18 N -0.93 -55.91 13.29 21.44 0.28 -55.62 16 19 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 C -0.06 -1.88 9.49 22.28 0.21 -1.67 16 24 C -0.08 -2.31 6.33 22.41 0.14 -2.16 16 25 Cl -0.07 -1.88 28.50 -2.72 -0.08 -1.96 16 26 H 0.12 0.84 8.06 -2.91 -0.02 0.81 16 27 H 0.11 0.84 7.90 -2.91 -0.02 0.81 16 28 H 0.12 1.57 8.06 -2.91 -0.02 1.54 16 29 H 0.08 0.97 7.37 -2.39 -0.02 0.95 16 30 H 0.09 0.99 7.67 -2.39 -0.02 0.97 16 31 H 0.17 2.17 6.30 -2.91 -0.02 2.15 16 32 H 0.15 2.92 5.69 -2.91 -0.02 2.90 16 33 H 0.06 2.38 7.77 -2.39 -0.02 2.36 16 34 H 0.05 1.60 6.66 -2.39 -0.02 1.59 16 35 H 0.08 2.66 6.08 -2.39 -0.01 2.64 16 36 H 0.06 2.63 6.78 -2.39 -0.02 2.62 16 37 H 0.08 3.21 6.80 -2.91 -0.02 3.19 16 38 H 0.11 2.28 8.06 -2.91 -0.02 2.25 16 39 H 0.12 2.26 6.54 -2.91 -0.02 2.24 16 40 H 0.00 -0.02 7.86 -2.38 -0.02 -0.04 16 41 H -0.02 -1.22 6.31 -2.39 -0.02 -1.23 16 42 H 0.26 14.88 8.31 -92.71 -0.77 14.10 16 43 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -65.47 368.11 3.56 -61.91 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.00 Total: 12.22 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 5.44 Total: -28.56 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -3.94 Total: -82.14 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.89 Total: -8.03 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.96 kcal Total: -65.47 3.56 -61.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430086749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.316 kcal (2) G-P(sol) polarization free energy of solvation -65.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds