Wall clock time and date at job start Tue Mar 31 2020 12:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 H 1.07999 * 119.99515 * 120.00667 * 4 2 1 6 6 C 1.37870 * 120.00176 * 300.00134 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47293 * 89.99746 * 8 6 4 10 10 H 1.48504 * 109.47104 * 209.99992 * 8 6 4 11 11 H 1.48495 * 109.47249 * 329.99739 * 8 6 4 12 12 C 1.52997 * 109.47143 * 239.99871 * 2 1 3 13 13 N 1.46496 * 109.47294 * 59.99994 * 12 2 1 14 14 C 1.34779 * 120.00447 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99695 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99877 * 180.02562 * 14 13 12 17 17 H 1.08996 * 115.55228 * 34.27913 * 16 14 13 18 18 C 1.53007 * 117.49547 * 248.60444 * 16 14 13 19 19 C 1.53001 * 60.00079 * 252.51646 * 18 16 14 20 20 H 1.08996 * 117.50095 * 107.48975 * 19 18 16 21 21 C 1.50699 * 117.49777 * 252.51575 * 19 18 16 22 22 C 1.38238 * 120.00809 * 8.62021 * 21 19 18 23 23 C 1.38219 * 120.01370 * 179.97438 * 22 21 19 24 24 C 1.38266 * 120.02661 * 0.03536 * 23 22 21 25 25 C 1.38194 * 120.01428 * 359.97438 * 24 23 22 26 26 C 1.38333 * 120.00494 * 188.35101 * 21 19 18 27 27 Cl 1.73596 * 120.01633 * 359.97109 * 26 21 19 28 28 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 29 29 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 33 33 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 34 34 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.46832 * 179.97438 * 12 2 1 36 36 H 1.09004 * 109.47261 * 299.99863 * 12 2 1 37 37 H 0.97006 * 119.99755 * 359.97438 * 13 12 2 38 38 H 1.08996 * 117.50089 * 0.02562 * 18 16 14 39 39 H 1.09001 * 117.49598 * 145.00288 * 18 16 14 40 40 H 1.08000 * 119.99149 * 0.02562 * 22 21 19 41 41 H 1.07998 * 119.98967 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.98924 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.00580 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5653 3.7123 12 6 2.0400 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4909 -3.6695 15 8 2.5758 -1.4764 -3.7808 16 6 1.3758 0.2199 -4.8999 17 1 1.2883 1.3030 -4.8144 18 6 0.3422 -0.5065 -5.7631 19 6 1.7808 -0.3514 -6.2603 20 1 2.4103 -1.2412 -6.2652 21 6 2.0285 0.6265 -7.3798 22 6 1.0162 1.4703 -7.7973 23 6 1.2434 2.3677 -8.8237 24 6 2.4830 2.4216 -9.4339 25 6 3.4957 1.5785 -9.0175 26 6 3.2706 0.6840 -7.9860 27 17 4.5447 -0.3698 -7.4570 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.7087 1.1612 3.4844 35 1 3.1300 -0.7208 -1.2494 36 1 1.6767 -1.7490 -1.2492 37 1 0.9937 0.7578 -2.3564 38 1 0.0250 -1.4982 -5.4408 39 1 -0.4253 0.0988 -6.2454 40 1 0.0479 1.4288 -7.3209 41 1 0.4524 3.0269 -9.1493 42 1 2.6598 3.1228 -10.2361 43 1 4.4640 1.6210 -9.4939 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457989054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:29 Heat of formation + Delta-G solvation = -5.186242 kcal Electronic energy + Delta-G solvation = -24059.279299 eV Core-core repulsion = 20516.554705 eV Total energy + Delta-G solvation = -3542.724594 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30402 -39.16114 -36.92530 -36.55302 -35.88290 -33.24726 -31.10862 -31.00614 -30.68963 -26.15995 -25.72750 -25.24507 -24.28290 -23.33120 -22.62269 -20.74604 -19.74378 -18.75585 -17.80467 -17.07148 -15.92007 -15.70496 -15.58341 -15.05595 -14.88922 -14.65450 -14.25633 -14.09958 -13.83019 -13.59471 -12.95820 -12.85632 -12.53107 -12.22891 -12.16605 -11.96184 -11.71213 -11.54542 -11.39285 -11.19610 -10.93822 -10.86259 -10.82140 -10.68955 -10.56982 -10.37813 -10.20310 -9.63577 -9.57299 -9.29056 -9.12474 -8.81082 -8.75859 -8.44926 -8.30269 -6.02334 -4.12346 0.83728 0.92515 2.00107 2.81252 3.25932 3.28311 3.35234 3.39157 3.65732 3.91488 4.33241 4.41433 4.44925 4.64537 4.68906 4.79214 4.94715 5.04918 5.13636 5.24483 5.27927 5.33476 5.53871 5.62588 5.83463 5.85177 5.95682 6.08827 6.22939 6.24937 6.33144 6.47448 6.51115 6.78213 6.82600 6.93851 7.01869 7.04334 7.35522 7.55542 7.69341 8.00897 8.06578 8.16118 8.38514 8.71795 8.88561 9.53524 10.99089 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.024080 B = 0.002530 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.528438 B =11063.890069 C =11506.312860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.132 3.868 13 N -0.711 5.711 14 C 0.532 3.468 15 O -0.549 6.549 16 C -0.168 4.168 17 H 0.123 0.877 18 C -0.143 4.143 19 C -0.094 4.094 20 H 0.133 0.867 21 C -0.039 4.039 22 C -0.110 4.110 23 C -0.113 4.113 24 C -0.114 4.114 25 C -0.110 4.110 26 C -0.029 4.029 27 Cl -0.059 7.059 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.006 0.994 33 H 0.085 0.915 34 H 0.260 0.740 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.398 0.602 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.356 4.758 -23.225 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.010 3.990 13 N -0.361 5.361 14 C 0.317 3.683 15 O -0.428 6.428 16 C -0.190 4.190 17 H 0.141 0.859 18 C -0.180 4.180 19 C -0.113 4.113 20 H 0.151 0.849 21 C -0.040 4.040 22 C -0.128 4.128 23 C -0.131 4.131 24 C -0.133 4.133 25 C -0.128 4.128 26 C -0.056 4.056 27 Cl -0.030 7.030 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.025 0.975 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.234 0.766 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.815 4.060 -23.056 23.425 hybrid contribution 0.231 -0.023 0.993 1.020 sum -0.584 4.037 -22.062 22.436 Atomic orbital electron populations 1.21831 0.97750 0.99179 1.00102 1.18351 0.92804 0.92742 0.90542 1.21832 0.98602 0.98364 1.00080 1.20992 1.31421 1.12108 0.89910 0.92453 1.24878 0.94845 0.94946 0.98847 1.69808 1.36664 1.22811 1.23207 0.86572 0.78562 0.80165 0.82586 1.20709 1.21257 1.19908 1.21730 0.98151 0.95776 0.83384 1.46228 1.52297 1.31810 1.05764 1.19483 0.80510 0.84291 0.83978 1.90671 1.38467 1.26798 1.86817 1.22393 1.05624 1.00372 0.90575 0.85926 1.23124 0.91490 1.02474 1.00947 1.21102 0.99503 1.00022 0.90650 0.84891 1.19043 0.92048 0.96733 0.96190 1.21085 0.98943 0.95305 0.97432 1.21226 0.97348 0.98468 0.96081 1.21118 0.92960 0.98949 1.00246 1.21071 1.00339 0.95309 0.96116 1.20836 0.90017 0.96397 0.98316 1.98401 1.49940 1.64866 1.89744 0.89588 0.97455 0.95447 0.95449 0.97492 0.89588 0.93017 0.92729 0.92728 0.76644 0.87487 0.87528 0.84816 0.85333 0.85183 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.51 -13.30 8.01 -34.44 -0.28 -13.58 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.62 9.35 55.43 0.52 -23.10 16 8 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.13 2.83 4.50 -4.05 -0.02 2.81 16 13 N -0.71 -12.73 4.96 -60.30 -0.30 -13.03 16 14 C 0.53 9.28 7.61 -10.99 -0.08 9.20 16 15 O -0.55 -11.55 16.26 5.55 0.09 -11.46 16 16 C -0.17 -2.17 5.82 -91.77 -0.53 -2.70 16 17 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 18 C -0.14 -1.50 9.56 -26.73 -0.26 -1.76 16 19 C -0.09 -1.15 5.06 -91.77 -0.46 -1.62 16 20 H 0.13 1.91 6.70 -51.93 -0.35 1.56 16 21 C -0.04 -0.43 5.61 -104.59 -0.59 -1.01 16 22 C -0.11 -0.95 9.30 -39.59 -0.37 -1.31 16 23 C -0.11 -0.83 10.05 -39.58 -0.40 -1.23 16 24 C -0.11 -0.84 10.05 -39.59 -0.40 -1.24 16 25 C -0.11 -0.98 9.83 -39.55 -0.39 -1.36 16 26 C -0.03 -0.32 6.31 -39.49 -0.25 -0.57 16 27 Cl -0.06 -0.72 27.42 -51.86 -1.42 -2.14 16 28 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 29 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 33 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 34 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.40 6.41 6.16 -40.82 -0.25 6.16 16 38 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.11 0.82 6.18 -51.93 -0.32 0.50 16 40 H 0.13 0.91 6.02 -52.49 -0.32 0.60 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -29.36 362.38 -10.19 -39.55 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.93 Total: 5.75 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -3.59 Total: -16.81 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.22 Total: -36.13 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.42 Total: -2.14 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.36 -10.19 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.365 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds