Wall clock time and date at job start Tue Mar 31 2020 12:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47195 * 2 1 4 4 C 1.52999 * 109.46871 * 119.99572 * 2 1 3 5 5 C 1.53004 * 115.55046 * 35.90790 * 4 2 1 6 6 C 1.53005 * 117.50257 * 250.19787 * 4 2 1 7 7 C 1.53002 * 60.00069 * 252.50937 * 6 4 2 8 8 H 1.09004 * 117.49873 * 107.48385 * 7 6 4 9 9 C 1.50697 * 117.52028 * 252.51881 * 7 6 4 10 10 O 1.21281 * 120.00224 * 66.77454 * 9 7 6 11 11 N 1.34775 * 119.99817 * 246.77923 * 9 7 6 12 12 C 1.37132 * 120.00082 * 177.94203 * 11 9 7 13 13 H 1.08005 * 120.00390 * 240.96486 * 12 11 9 14 14 C 1.38883 * 119.99985 * 60.96939 * 12 11 9 15 15 N 1.31420 * 120.00495 * 55.72646 * 14 12 11 16 16 Si 1.86803 * 119.99718 * 235.73264 * 14 12 11 17 17 H 1.48490 * 109.47541 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47111 * 119.99686 * 16 14 12 19 19 H 1.48500 * 109.47089 * 239.99356 * 16 14 12 20 20 C 1.39816 * 120.00109 * 357.94663 * 11 9 7 21 21 C 1.38957 * 120.06832 * 77.84471 * 20 11 9 22 22 C 1.38067 * 119.93492 * 179.76983 * 21 20 11 23 23 C 1.38421 * 120.06475 * 0.50692 * 22 21 20 24 24 Cl 1.73595 * 119.93760 * 179.72087 * 23 22 21 25 25 C 1.38425 * 120.12740 * 359.74718 * 23 22 21 26 26 C 1.38067 * 120.06640 * 359.97438 * 25 23 22 27 27 H 1.09001 * 109.46588 * 60.00067 * 1 2 3 28 28 H 1.08994 * 109.47173 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46994 * 300.00692 * 1 2 3 30 30 H 1.08991 * 109.47209 * 239.99471 * 2 1 3 31 31 H 1.08998 * 109.46512 * 174.21411 * 3 2 1 32 32 H 1.08994 * 109.46582 * 294.21123 * 3 2 1 33 33 H 1.08995 * 109.47320 * 54.21048 * 3 2 1 34 34 H 1.08999 * 109.47157 * 205.67175 * 5 4 2 35 35 H 1.09002 * 109.47133 * 325.66603 * 5 4 2 36 36 H 1.08990 * 109.47210 * 85.66843 * 5 4 2 37 37 H 1.08995 * 117.49855 * 145.02272 * 6 4 2 38 38 H 1.09000 * 117.49525 * 359.97438 * 6 4 2 39 39 H 0.97000 * 120.00845 * 184.91683 * 15 14 12 40 40 H 1.08004 * 120.02840 * 359.97438 * 21 20 11 41 41 H 1.08002 * 119.97046 * 180.25327 * 22 21 20 42 42 H 1.08002 * 119.96147 * 180.02562 * 25 23 22 43 43 H 1.07998 * 120.03058 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.2057 -1.9197 1.7062 6 6 2.7089 0.1283 2.3319 7 6 3.5545 -0.7958 1.4533 8 1 4.1876 -0.3311 0.6973 9 6 4.1103 -2.0442 2.0886 10 8 3.3607 -2.9273 2.4477 11 7 5.4406 -2.1791 2.2579 12 6 5.9435 -3.2962 2.8742 13 1 6.5087 -3.1998 3.7895 14 6 5.7262 -4.5515 2.3213 15 7 6.0873 -4.7950 1.0814 16 14 4.9203 -5.8940 3.3402 17 1 4.6117 -5.3696 4.6947 18 1 3.6639 -6.3299 2.6795 19 1 5.8453 -7.0499 3.4563 20 6 6.3078 -1.1802 1.8053 21 6 6.4640 -0.0095 2.5374 22 6 7.3247 0.9731 2.0904 23 6 8.0238 0.7974 0.9087 24 17 9.0997 2.0381 0.3460 25 6 7.8663 -0.3655 0.1745 26 6 7.0113 -1.3540 0.6195 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1251 1.4442 0.1036 32 1 1.7638 1.9255 -0.9372 33 1 1.5946 1.9854 0.8336 34 1 1.3450 -2.0725 2.7763 35 1 0.1524 -1.7288 1.5006 36 1 1.5253 -2.8114 1.1671 37 1 2.5546 -0.1666 3.3698 38 1 2.7861 1.2009 2.1538 39 1 5.8718 -5.6475 0.6719 40 1 5.9150 0.1301 3.4570 41 1 7.4496 1.8814 2.6611 42 1 8.4135 -0.4999 -0.7469 43 1 6.8886 -2.2609 0.0461 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592653976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:28 Heat of formation + Delta-G solvation = 17.125601 kcal Electronic energy + Delta-G solvation = -25673.291075 eV Core-core repulsion = 22131.533995 eV Total energy + Delta-G solvation = -3541.757080 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.124 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.97781 -38.71142 -37.22753 -36.08609 -34.31550 -32.80369 -32.19809 -30.54599 -28.98562 -28.60061 -26.35821 -25.31079 -23.09861 -22.71078 -22.22811 -21.61813 -19.26031 -17.91041 -17.52955 -16.74302 -16.12037 -15.36315 -15.25794 -14.60041 -14.46414 -14.08039 -13.99162 -13.43175 -13.35206 -12.99712 -12.95473 -12.78860 -12.65403 -12.25775 -12.15589 -11.93735 -11.79730 -11.41413 -11.30894 -11.24707 -11.15376 -11.11609 -10.99044 -10.74750 -10.65988 -10.42877 -10.40689 -10.20959 -9.56604 -9.24399 -8.57542 -8.55046 -8.44480 -8.03346 -7.49597 -6.60470 -4.12191 1.65723 1.82202 2.48897 3.23689 3.43178 3.52999 3.57242 4.13526 4.16111 4.35528 4.60166 4.78326 4.95724 5.05053 5.16657 5.26849 5.31019 5.32032 5.46480 5.51779 5.68573 5.76601 5.80935 5.89150 5.91375 5.97130 6.01027 6.02011 6.15473 6.17272 6.26275 6.36325 6.42633 6.45308 6.48478 6.53314 6.63607 6.64106 6.75840 7.04389 7.21805 7.29250 7.40248 8.23383 8.80436 8.89200 9.32661 9.97225 10.31069 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.008372 B = 0.006429 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3343.492243 B = 4354.038094 C = 7037.194800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.060 4.060 3 C -0.149 4.149 4 C -0.093 4.093 5 C -0.103 4.103 6 C -0.154 4.154 7 C -0.171 4.171 8 H 0.108 0.892 9 C 0.522 3.478 10 O -0.539 6.539 11 N -0.412 5.412 12 C -0.399 4.399 13 H 0.082 0.918 14 C 0.124 3.876 15 N -0.786 5.786 16 Si 0.883 3.117 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.294 1.294 20 C 0.170 3.830 21 C -0.126 4.126 22 C -0.106 4.106 23 C -0.059 4.059 24 Cl -0.096 7.096 25 C -0.107 4.107 26 C -0.103 4.103 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.270 0.730 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.408 11.790 -3.148 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 C -0.206 4.206 4 C -0.093 4.093 5 C -0.159 4.159 6 C -0.192 4.192 7 C -0.193 4.193 8 H 0.126 0.874 9 C 0.311 3.689 10 O -0.418 6.418 11 N -0.131 5.131 12 C -0.520 4.520 13 H 0.099 0.901 14 C -0.095 4.095 15 N -0.413 5.413 16 Si 0.708 3.292 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.221 1.221 20 C 0.079 3.921 21 C -0.146 4.146 22 C -0.125 4.125 23 C -0.086 4.086 24 Cl -0.067 7.067 25 C -0.126 4.126 26 C -0.122 4.122 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.614 11.271 -3.163 12.251 hybrid contribution 0.123 -0.578 0.171 0.616 sum -3.491 10.692 -2.992 11.639 Atomic orbital electron populations 1.21876 0.95125 1.01926 1.01144 1.20584 0.95542 0.95262 0.96433 1.21958 1.01358 0.96015 1.01268 1.21497 0.92456 0.98820 0.96550 1.21396 0.96512 0.95679 1.02360 1.23186 1.02819 0.96804 0.96364 1.22407 0.94245 0.99023 1.03594 0.87391 1.19700 0.82583 0.86553 0.80071 1.90499 1.56675 1.42708 1.51891 1.40965 1.02089 1.16843 1.53227 1.18472 1.45024 0.81861 1.06672 0.90096 1.25283 0.91060 0.98522 0.94653 1.70532 1.29050 1.24687 1.17054 0.86741 0.79896 0.79620 0.82948 1.18772 1.20209 1.22121 1.18589 0.93980 0.88449 0.91048 1.21290 0.99329 0.93814 1.00147 1.20742 0.97031 0.99668 0.95062 1.20749 0.98568 0.91531 0.97716 1.98315 1.64706 1.54232 1.89447 1.20892 0.99372 0.92353 0.99983 1.21610 0.95835 0.98853 0.95945 0.93185 0.92062 0.92656 0.91083 0.92365 0.93019 0.92421 0.91641 0.93540 0.91708 0.88836 0.88277 0.91976 0.85690 0.85795 0.85748 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.27 37.16 0.31 -1.31 16 2 C -0.06 -0.78 3.15 -90.62 -0.29 -1.07 16 3 C -0.15 -1.70 7.80 37.16 0.29 -1.41 16 4 C -0.09 -1.47 2.45 -154.50 -0.38 -1.85 16 5 C -0.10 -1.77 7.77 37.16 0.29 -1.48 16 6 C -0.15 -2.36 8.94 -26.73 -0.24 -2.60 16 7 C -0.17 -3.12 4.39 -91.77 -0.40 -3.53 16 8 H 0.11 1.94 6.78 -51.93 -0.35 1.59 16 9 C 0.52 12.08 7.22 -10.99 -0.08 12.00 16 10 O -0.54 -13.90 11.85 5.56 0.07 -13.83 16 11 N -0.41 -9.85 2.58 -58.97 -0.15 -10.00 16 12 C -0.40 -10.66 8.56 -14.94 -0.13 -10.78 16 13 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 14 C 0.12 3.31 4.47 -17.49 -0.08 3.23 16 15 N -0.79 -20.96 13.95 55.49 0.77 -20.19 16 16 Si 0.88 21.62 29.06 -169.99 -4.94 16.68 16 17 H -0.26 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 C 0.17 3.52 3.70 -83.68 -0.31 3.21 16 21 C -0.13 -2.22 9.58 -39.38 -0.38 -2.60 16 22 C -0.11 -1.63 9.82 -39.58 -0.39 -2.02 16 23 C -0.06 -0.93 6.32 -39.45 -0.25 -1.18 16 24 Cl -0.10 -1.31 28.95 -51.86 -1.50 -2.81 16 25 C -0.11 -1.78 9.82 -39.58 -0.39 -2.17 16 26 C -0.10 -2.03 9.96 -39.37 -0.39 -2.43 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.71 6.41 -51.93 -0.33 0.37 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.71 6.63 -51.93 -0.34 0.36 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.61 7.30 -51.93 -0.38 0.23 16 34 H 0.06 1.23 6.97 -51.93 -0.36 0.87 16 35 H 0.05 0.67 5.58 -51.93 -0.29 0.38 16 36 H 0.06 1.28 7.31 -51.93 -0.38 0.90 16 37 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 38 H 0.10 1.28 5.91 -51.93 -0.31 0.97 16 39 H 0.27 6.77 8.32 -40.82 -0.34 6.43 16 40 H 0.13 2.11 8.06 -52.48 -0.42 1.69 16 41 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.14 3.10 8.06 -52.49 -0.42 2.67 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -27.88 362.03 -9.21 -37.09 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.10 Total: 3.57 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -2.81 Total: -15.97 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 0.62 Total: -30.19 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.07 Total: -13.83 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.94 Total: 16.68 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.50 Total: -2.81 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.88 -9.21 -37.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592653976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.215 kcal (2) G-P(sol) polarization free energy of solvation -27.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds