Wall clock time and date at job start Tue Mar 31 2020 12:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47116 * 2 1 4 4 H 1.09005 * 109.47172 * 55.00435 * 3 2 1 5 5 C 1.50699 * 109.47265 * 175.00467 * 3 2 1 6 6 H 1.07998 * 120.00273 * 119.99959 * 5 3 2 7 7 C 1.37882 * 119.99891 * 300.00121 * 5 3 2 8 8 N 1.31508 * 120.00165 * 179.72321 * 7 5 3 9 9 Si 1.86803 * 119.99995 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46971 * 89.99943 * 9 7 5 11 11 H 1.48494 * 109.47477 * 210.00159 * 9 7 5 12 12 H 1.48505 * 109.47192 * 330.00274 * 9 7 5 13 13 N 1.46497 * 109.47491 * 295.00388 * 3 2 1 14 14 C 1.34780 * 119.99854 * 84.99676 * 13 3 2 15 15 O 1.21275 * 120.00372 * 355.57896 * 14 13 3 16 16 C 1.50702 * 119.99743 * 175.58106 * 14 13 3 17 17 C 1.50707 * 112.84838 * 55.41377 * 16 14 13 18 18 C 1.38233 * 120.00551 * 245.75024 * 17 16 14 19 19 C 1.38228 * 120.00955 * 179.74814 * 18 17 16 20 20 C 1.38259 * 120.02593 * 0.55542 * 19 18 17 21 21 C 1.38192 * 120.01281 * 359.70834 * 20 19 18 22 22 C 1.38331 * 120.00450 * 66.03543 * 17 16 14 23 23 Cl 1.73594 * 120.01430 * 359.97438 * 22 17 16 24 24 C 1.53779 * 113.61526 * 284.22110 * 16 14 13 25 25 C 1.54059 * 86.98317 * 270.83660 * 24 16 14 26 26 C 1.53777 * 87.07553 * 334.56701 * 25 24 16 27 27 H 1.09002 * 109.46749 * 299.99300 * 1 2 3 28 28 H 1.08994 * 109.47115 * 59.99570 * 1 2 3 29 29 H 1.08995 * 109.46911 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46749 * 240.00700 * 2 1 3 31 31 H 1.08993 * 109.47638 * 120.00429 * 2 1 3 32 32 H 0.97003 * 120.00441 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00130 * 265.00385 * 13 3 2 34 34 H 1.08001 * 119.99546 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.98535 * 180.26003 * 19 18 17 36 36 H 1.08000 * 119.99271 * 179.72222 * 20 19 18 37 37 H 1.08005 * 120.00615 * 180.02562 * 21 20 19 38 38 H 1.08997 * 113.61646 * 25.43106 * 24 16 14 39 39 H 1.09004 * 113.61427 * 156.33876 * 24 16 14 40 40 H 1.09005 * 113.61854 * 220.02021 * 25 24 16 41 41 H 1.09002 * 113.61175 * 89.11508 * 25 24 16 42 42 H 1.09000 * 113.61975 * 270.87727 * 26 25 24 43 43 H 1.09004 * 113.61245 * 139.97328 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8784 1.2278 8 7 5.4542 0.8751 1.3332 9 14 3.0965 0.1100 2.5706 10 1 2.8746 -1.3261 2.2644 11 1 3.7943 0.2358 3.8754 12 1 1.7882 0.8093 2.6395 13 7 1.6524 2.0976 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3688 2.5631 -0.4644 16 6 0.0728 3.4243 -2.6168 17 6 0.2412 2.6038 -3.8697 18 6 1.1983 2.9557 -4.8030 19 6 1.3563 2.2002 -5.9498 20 6 0.5495 1.0991 -6.1695 21 6 -0.4113 0.7496 -5.2397 22 6 -0.5660 1.5020 -4.0888 23 17 -1.7727 1.0635 -2.9204 24 6 0.7201 4.8167 -2.7007 25 6 -0.5188 5.3480 -1.9548 26 6 -1.2835 4.1437 -2.5292 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 5.8774 0.4773 2.1102 33 1 2.2718 2.1232 -1.9977 34 1 1.8257 3.8184 -4.6341 35 1 2.1070 2.4731 -6.6767 36 1 0.6704 0.5119 -7.0678 37 1 -1.0411 -0.1108 -5.4112 38 1 1.6451 4.9033 -2.1307 39 1 0.8121 5.1948 -3.7189 40 1 -0.8741 6.3088 -2.3273 41 1 -0.4185 5.3243 -0.8696 42 1 -1.7382 4.3381 -3.5005 43 1 -1.9748 3.6873 -1.8207 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593605092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:17 Heat of formation + Delta-G solvation = -15.076370 kcal Electronic energy + Delta-G solvation = -26215.002672 eV Core-core repulsion = 22671.849210 eV Total energy + Delta-G solvation = -3543.153462 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04757 -39.93950 -38.54614 -37.32932 -36.79368 -34.40084 -33.28330 -32.14239 -31.64290 -29.51733 -27.13614 -26.73074 -24.63335 -23.57497 -23.23399 -22.53790 -21.49692 -20.37852 -18.82782 -18.30457 -17.57619 -17.39685 -16.76672 -16.41250 -16.15351 -15.93647 -15.53560 -15.15387 -14.97727 -14.73730 -14.63206 -14.24127 -13.98977 -13.75876 -13.69535 -13.29578 -13.00920 -12.89341 -12.82981 -12.68315 -12.50588 -12.34313 -12.22693 -11.95394 -11.87333 -11.82233 -11.40689 -11.33293 -11.23339 -11.13527 -10.87521 -10.65418 -9.80071 -9.71455 -9.53112 -8.39649 -6.44064 0.21061 0.32734 1.23802 1.26111 1.31505 1.41596 1.80376 2.23604 2.42532 2.71858 2.96069 3.44602 3.59370 3.65980 3.86708 3.89850 4.03318 4.20691 4.24055 4.30796 4.39005 4.46950 4.48368 4.57009 4.71973 4.76336 4.82429 4.84927 4.97294 5.00515 5.01929 5.11532 5.13097 5.14931 5.28752 5.33747 5.40805 5.42843 5.47774 5.52106 5.53979 5.69215 5.91402 6.14694 6.57373 6.91696 7.19277 7.50095 8.75467 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.014284 B = 0.005036 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.714931 B = 5558.802661 C = 5618.636350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C 0.255 3.745 4 H 0.020 0.980 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.034 3.966 8 N -0.931 5.931 9 Si 0.932 3.068 10 H -0.264 1.264 11 H -0.291 1.291 12 H -0.263 1.263 13 N -0.698 5.698 14 C 0.535 3.465 15 O -0.565 6.565 16 C -0.071 4.071 17 C -0.072 4.072 18 C -0.106 4.106 19 C -0.109 4.109 20 C -0.106 4.106 21 C -0.120 4.120 22 C -0.049 4.049 23 Cl -0.077 7.077 24 C -0.115 4.115 25 C -0.137 4.137 26 C -0.103 4.103 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.270 0.730 33 H 0.400 0.600 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.141 0.859 38 H 0.066 0.934 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 4.714 -17.945 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.150 3.850 4 H 0.038 0.962 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.166 4.166 8 N -0.570 5.570 9 Si 0.759 3.241 10 H -0.190 1.190 11 H -0.218 1.218 12 H -0.188 1.188 13 N -0.346 5.346 14 C 0.321 3.679 15 O -0.444 6.444 16 C -0.075 4.075 17 C -0.073 4.073 18 C -0.124 4.124 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.139 4.139 22 C -0.076 4.076 23 Cl -0.048 7.048 24 C -0.153 4.153 25 C -0.175 4.175 26 C -0.141 4.141 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.234 0.766 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.177 0.823 37 H 0.159 0.841 38 H 0.084 0.916 39 H 0.144 0.856 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.122 0.878 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.382 4.551 -17.059 21.564 hybrid contribution 0.134 -0.792 1.089 1.353 sum -12.248 3.758 -15.970 20.474 Atomic orbital electron populations 1.21996 0.95384 1.00163 1.02980 1.22172 0.95816 0.98791 1.00416 1.18725 0.93204 0.89338 0.83718 0.96192 1.21264 0.90234 1.38450 1.06847 0.92429 1.25466 0.95645 0.95819 0.99682 1.69959 1.10043 1.46182 1.30802 0.86108 0.79389 0.79861 0.78709 1.18975 1.21805 1.18762 1.45911 1.15845 1.56185 1.16636 1.20069 0.81339 0.78434 0.88027 1.90628 1.49984 1.61284 1.42514 1.20931 1.01806 0.94827 0.89909 1.19391 0.97076 0.94990 0.95868 1.21360 0.96559 1.01107 0.93337 1.21623 0.99264 0.94479 0.97353 1.21501 0.94120 0.97346 0.99453 1.21294 1.00168 0.99854 0.92543 1.21113 0.95174 0.98118 0.93178 1.98394 1.55356 1.92528 1.58480 1.23133 0.97891 0.91021 1.03221 1.22826 0.96301 0.98923 0.99404 1.22813 0.93892 0.95303 1.02068 0.94739 0.90244 0.93457 0.92072 0.94133 0.92080 0.76605 0.83008 0.82311 0.82319 0.84096 0.91556 0.85600 0.88347 0.92247 0.87813 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.24 8.47 71.98 0.61 -5.64 16 2 C -0.13 -6.12 5.11 30.59 0.16 -5.97 16 3 C 0.26 12.40 1.83 44.25 0.08 12.48 16 4 H 0.02 1.09 6.70 -2.38 -0.02 1.08 16 5 C -0.53 -29.28 9.31 25.60 0.24 -29.04 16 6 H 0.06 3.37 7.98 -2.91 -0.02 3.34 16 7 C 0.03 1.94 5.45 84.66 0.46 2.40 16 8 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 9 Si 0.93 45.98 24.41 68.60 1.67 47.65 16 10 H -0.26 -12.42 6.83 99.48 0.68 -11.74 16 11 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 12 H -0.26 -13.00 6.53 99.48 0.65 -12.35 16 13 N -0.70 -28.34 4.96 -446.10 -2.21 -30.55 16 14 C 0.53 19.97 4.14 87.66 0.36 20.34 16 15 O -0.56 -24.56 12.50 -3.01 -0.04 -24.60 16 16 C -0.07 -1.97 0.57 -53.15 -0.03 -2.00 16 17 C -0.07 -1.76 4.60 -19.84 -0.09 -1.86 16 18 C -0.11 -1.99 9.05 22.27 0.20 -1.78 16 19 C -0.11 -1.66 10.05 22.27 0.22 -1.44 16 20 C -0.11 -1.66 10.05 22.26 0.22 -1.44 16 21 C -0.12 -2.45 9.83 22.29 0.22 -2.23 16 22 C -0.05 -1.26 6.19 22.32 0.14 -1.12 16 23 Cl -0.08 -2.25 24.04 -2.72 -0.07 -2.32 16 24 C -0.12 -2.57 6.33 31.21 0.20 -2.37 16 25 C -0.14 -3.21 7.81 31.21 0.24 -2.97 16 26 C -0.10 -2.62 5.91 31.12 0.18 -2.44 16 27 H 0.03 1.53 7.80 -2.39 -0.02 1.51 16 28 H 0.08 3.21 3.64 -2.39 -0.01 3.20 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.04 1.94 3.22 -2.39 -0.01 1.93 16 32 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.40 14.98 8.33 -92.71 -0.77 14.21 16 34 H 0.15 2.26 6.41 -2.91 -0.02 2.25 16 35 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 37 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.07 1.67 8.09 -2.39 -0.02 1.65 16 39 H 0.13 1.94 6.79 -2.38 -0.02 1.92 16 40 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.10 2.17 8.09 -2.39 -0.02 2.15 16 43 H 0.06 1.92 7.16 -2.39 -0.02 1.91 16 Total: -1.00 -68.59 344.28 3.26 -65.33 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.18 Total: 25.42 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 3.42 Total: -25.09 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -1.91 Total: -86.40 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.04 Total: -24.60 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.67 Total: 47.65 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.07 Total: -2.32 kcal Total: -68.59 3.26 -65.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593605092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.256 kcal (2) G-P(sol) polarization free energy of solvation -68.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds