Wall clock time and date at job start Tue Mar 31 2020 12:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 N 1.29031 * 124.91620 * 119.71617 * 4 2 1 6 6 C 1.31783 * 117.12504 * 179.81258 * 5 4 2 7 7 C 1.50695 * 122.75219 * 180.22834 * 6 5 4 8 8 C 1.50705 * 109.47008 * 265.25016 * 7 6 5 9 9 N 1.29946 * 126.28377 * 269.68283 * 8 7 6 10 10 O 1.21305 * 110.25150 * 179.84258 * 9 8 7 11 11 C 1.33647 * 109.80596 * 0.43062 * 10 9 8 12 12 C 1.50701 * 126.54677 * 179.71819 * 11 10 9 13 13 C 1.53007 * 109.46866 * 270.01943 * 12 11 10 14 14 C 1.52994 * 109.47052 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47053 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99865 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00031 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00093 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99962 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46940 * 90.00170 * 19 17 15 21 21 H 1.48495 * 109.47036 * 210.00075 * 19 17 15 22 22 H 1.48498 * 109.46845 * 329.99811 * 19 17 15 23 23 N 1.31124 * 106.90030 * 359.73547 * 11 10 9 24 24 C 1.33646 * 114.49875 * 0.47947 * 6 5 4 25 25 S 1.70972 * 124.91751 * 300.02763 * 4 2 1 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.08995 * 109.47139 * 25.24323 * 7 6 5 34 34 H 1.08998 * 109.46992 * 145.24868 * 7 6 5 35 35 H 1.08997 * 109.47374 * 30.02226 * 12 11 10 36 36 H 1.09001 * 109.47292 * 150.02524 * 12 11 10 37 37 H 1.09005 * 109.47023 * 300.00411 * 13 12 11 38 38 H 1.09001 * 109.46690 * 60.00212 * 13 12 11 39 39 H 1.09005 * 109.47309 * 299.99950 * 14 13 12 40 40 H 1.09001 * 109.47433 * 60.00381 * 14 13 12 41 41 H 0.96996 * 119.99977 * 179.97438 * 18 17 15 42 42 H 1.07995 * 126.03807 * 179.70752 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7731 -1.7669 1.2225 6 6 3.1280 -2.2606 2.3917 7 6 3.9943 -3.4859 2.5302 8 6 3.1207 -4.7022 2.6997 9 7 2.6988 -5.1951 3.8255 10 8 2.0128 -6.1751 3.6240 11 6 1.9372 -6.4127 2.3110 12 6 1.1883 -7.5377 1.6444 13 6 2.1104 -8.7504 1.5021 14 6 1.3503 -9.8924 0.8247 15 6 2.2583 -11.0870 0.6851 16 1 3.2759 -11.0365 1.0433 17 6 1.7903 -12.2440 0.0991 18 7 2.5829 -13.2863 -0.0232 19 14 0.0304 -12.3310 -0.5211 20 1 -0.0175 -11.8889 -1.9380 21 1 -0.4609 -13.7288 -0.4218 22 1 -0.8294 -11.4443 0.3034 23 7 2.6395 -5.4802 1.7138 24 6 2.6524 -1.5887 3.4445 25 16 1.6972 -0.2376 2.8389 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 4.6071 -3.6005 1.6362 34 1 4.6398 -3.3778 3.4018 35 1 0.3235 -7.8079 2.2504 36 1 0.8545 -7.2174 0.6574 37 1 2.9752 -8.4801 0.8960 38 1 2.4442 -9.0707 2.4890 39 1 0.4853 -10.1628 1.4304 40 1 1.0168 -9.5718 -0.1623 41 1 2.2535 -14.1004 -0.4351 42 1 2.8227 -1.8314 4.4829 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594535310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:03 Heat of formation + Delta-G solvation = 84.390657 kcal Electronic energy + Delta-G solvation = -23300.442763 eV Core-core repulsion = 19795.938972 eV Total energy + Delta-G solvation = -3504.503791 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.125 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.45638 -40.32135 -36.48016 -35.87869 -35.24365 -33.15901 -31.97209 -30.93964 -28.43115 -28.17298 -27.67562 -25.41166 -24.25984 -23.29500 -21.71719 -20.96619 -20.29536 -20.05462 -18.09248 -17.68755 -17.33945 -16.67812 -16.12354 -15.46322 -14.95138 -14.89791 -14.58728 -14.40088 -14.12611 -13.84341 -13.51209 -13.21354 -13.01522 -12.80429 -12.65418 -12.43909 -12.36498 -12.13148 -11.93734 -11.70644 -11.69057 -11.44402 -11.31156 -11.13254 -10.90252 -10.82649 -10.16794 -10.00984 -9.92344 -9.81295 -9.72053 -9.51855 -9.23167 -9.09581 -8.55853 -6.05787 -4.04747 0.35968 1.00602 1.24302 1.41548 2.22459 2.49225 2.98400 3.30188 3.37749 3.39664 3.53872 3.77720 4.08028 4.35000 4.43355 4.52355 4.59955 4.76530 4.87803 5.02518 5.10141 5.10814 5.19022 5.27435 5.30350 5.33872 5.38076 5.48788 5.50236 5.59013 5.63928 5.72523 5.74705 5.83617 5.99129 6.08810 6.36135 6.43937 6.75034 7.19995 7.33097 7.44506 7.74893 8.26668 8.50837 8.98805 9.55613 11.07592 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.002263 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.977974 B =12372.298772 C =13160.471185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.022 4.022 3 C -0.146 4.146 4 C 0.059 3.941 5 N -0.457 5.457 6 C 0.074 3.926 7 C 0.048 3.952 8 C 0.172 3.828 9 N -0.389 5.389 10 O 0.074 5.926 11 C 0.203 3.797 12 C -0.035 4.035 13 C -0.099 4.099 14 C -0.012 4.012 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.902 5.902 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 N -0.478 5.478 24 C -0.249 4.249 25 S 0.121 5.879 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.263 0.737 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 31.458 4.696 31.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.044 4.044 3 C -0.205 4.205 4 C -0.220 4.220 5 N -0.171 5.171 6 C -0.059 4.059 7 C 0.007 3.993 8 C -0.102 4.102 9 N -0.098 5.098 10 O 0.016 5.984 11 C -0.017 4.017 12 C -0.074 4.074 13 C -0.137 4.137 14 C -0.049 4.049 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 N -0.211 5.211 24 C -0.388 4.388 25 S 0.377 5.623 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.039 0.961 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.394 32.429 5.033 32.992 hybrid contribution -0.365 -1.195 -0.192 1.264 sum -3.759 31.234 4.841 31.829 Atomic orbital electron populations 1.21935 0.93043 1.02928 1.02718 1.19860 0.96196 0.95417 0.92922 1.21926 1.01825 0.93983 1.02739 1.27142 0.99646 0.96239 0.98939 1.66095 1.13022 1.09814 1.28124 1.19785 1.01135 0.98286 0.86737 1.18310 0.92762 0.82527 1.05730 1.25383 1.01050 0.99398 0.84320 1.74570 1.10866 1.00493 1.23907 1.85281 1.50526 1.34295 1.28330 1.29258 0.95322 0.96789 0.80358 1.20650 0.97731 0.88905 1.00109 1.21550 0.97899 0.92340 1.01935 1.19574 0.96383 0.93573 0.95403 1.21086 0.99596 0.95732 1.39617 0.90991 1.25039 0.97551 0.95565 0.95377 1.69914 1.36035 1.03535 1.44630 0.86765 0.85508 0.77284 0.79643 1.20249 1.21407 1.18897 1.71956 1.13387 1.05186 1.30585 1.26903 1.06376 1.00865 1.04653 1.83850 1.48298 1.28276 1.01911 0.92266 0.91874 0.90955 0.87817 0.92253 0.91931 0.91013 0.86683 0.87342 0.88317 0.87506 0.91707 0.91900 0.96148 0.96566 0.92689 0.80382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.09 37.16 0.34 -0.60 16 2 C -0.02 -0.16 3.35 -91.78 -0.31 -0.47 16 3 C -0.15 -0.80 9.09 37.16 0.34 -0.46 16 4 C 0.06 0.60 6.03 -13.46 -0.08 0.52 16 5 N -0.46 -5.80 10.53 -8.06 -0.08 -5.88 16 6 C 0.07 0.88 5.98 -84.22 -0.50 0.37 16 7 C 0.05 0.56 6.25 -29.03 -0.18 0.38 16 8 C 0.17 2.58 7.45 -156.37 -1.17 1.42 16 9 N -0.39 -6.06 12.16 30.90 0.38 -5.68 16 10 O 0.07 1.16 11.31 18.09 0.20 1.37 16 11 C 0.20 3.20 7.77 -13.06 -0.10 3.10 16 12 C -0.03 -0.52 5.84 -27.88 -0.16 -0.68 16 13 C -0.10 -1.84 5.13 -26.73 -0.14 -1.98 16 14 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 15 C -0.52 -14.62 9.66 -34.44 -0.33 -14.96 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 19 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 23 N -0.48 -7.99 11.55 -9.86 -0.11 -8.10 16 24 C -0.25 -2.51 11.14 29.12 0.32 -2.18 16 25 S 0.12 1.04 22.53 -107.50 -2.42 -1.38 16 26 H 0.06 0.34 7.93 -51.93 -0.41 -0.07 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.29 7.93 -51.93 -0.41 -0.12 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 40 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -33.05 371.11 -8.78 -41.83 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -6.25 Total: -3.28 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -2.18 Total: -14.12 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.95 Total: -46.57 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: 0.20 Total: 1.37 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.42 Total: -1.38 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.05 -8.78 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594535310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.219 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds