Wall clock time and date at job start Tue Mar 31 2020 12:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47585 * 2 1 4 4 C 1.50707 * 109.47003 * 120.00200 * 2 1 3 5 5 N 1.29426 * 124.80191 * 299.69320 * 4 2 1 6 6 C 1.30944 * 117.36650 * 179.77188 * 5 4 2 7 7 C 1.35664 * 114.18830 * 0.51472 * 6 5 4 8 8 C 1.46680 * 126.13387 * 179.69778 * 7 6 5 9 9 O 1.21684 * 119.99766 * 354.60033 * 8 7 6 10 10 N 1.34774 * 120.00110 * 174.60677 * 8 7 6 11 11 C 1.47873 * 126.94649 * 4.54521 * 10 8 7 12 12 C 1.56001 * 105.11173 * 181.87808 * 11 10 8 13 13 H 1.09006 * 116.80811 * 159.41739 * 12 11 10 14 14 C 1.57084 * 99.47806 * 33.16067 * 12 11 10 15 15 C 1.49292 * 126.94373 * 184.85984 * 10 8 7 16 16 H 1.08999 * 116.15340 * 15.83888 * 15 10 8 17 17 C 1.56026 * 104.09326 * 246.69798 * 15 10 8 18 18 N 1.47870 * 105.10307 * 288.76771 * 17 15 10 19 19 C 1.36933 * 126.94778 * 182.02290 * 18 17 15 20 20 H 1.07999 * 120.00231 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99481 * 359.97271 * 19 18 17 22 22 N 1.31614 * 120.00530 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99645 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47119 * 60.00271 * 23 21 19 25 25 H 1.48509 * 109.46960 * 179.97438 * 23 21 19 26 26 H 1.48490 * 109.47261 * 300.00149 * 23 21 19 27 27 S 1.70949 * 124.80504 * 120.00088 * 4 2 1 28 28 H 1.08996 * 109.47007 * 59.99964 * 1 2 3 29 29 H 1.09004 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47063 * 300.00282 * 1 2 3 31 31 H 1.09001 * 109.47063 * 239.99718 * 2 1 3 32 32 H 1.08991 * 109.47579 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46661 * 300.00111 * 3 2 1 34 34 H 1.09001 * 109.47150 * 59.99771 * 3 2 1 35 35 H 1.07996 * 122.90642 * 180.25007 * 6 5 4 36 36 H 1.08999 * 110.30839 * 300.90658 * 11 10 8 37 37 H 1.08997 * 110.31404 * 63.09646 * 11 10 8 38 38 H 1.09001 * 112.36116 * 191.51321 * 14 12 11 39 39 H 1.08996 * 112.36714 * 64.07384 * 14 12 11 40 40 H 1.09003 * 110.31364 * 47.66809 * 17 15 10 41 41 H 1.08991 * 110.31297 * 169.75904 * 17 15 10 42 42 H 0.97003 * 120.00689 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7822 -0.3470 2.4472 6 6 2.2903 -1.0752 3.4095 7 6 3.0330 -2.1257 2.9788 8 6 3.7242 -3.1020 3.8276 9 8 3.7417 -2.9538 5.0352 10 7 4.3401 -4.1632 3.2699 11 6 4.4950 -4.4434 1.8262 12 6 5.2370 -5.8139 1.7553 13 1 5.1519 -6.3713 0.8224 14 6 4.6405 -6.4976 3.0376 15 6 4.9980 -5.2967 3.9848 16 1 4.7527 -5.4056 5.0412 17 6 6.5114 -5.1354 3.6411 18 7 6.6241 -5.5068 2.2142 19 6 7.7692 -5.5591 1.4652 20 1 7.7218 -5.8472 0.4255 21 6 8.9911 -5.2418 2.0425 22 7 9.0489 -4.8902 3.3095 23 14 10.5534 -5.3138 1.0210 24 1 10.4414 -4.3724 -0.1219 25 1 11.7144 -4.9315 1.8646 26 1 10.7465 -6.6940 0.5084 27 16 3.0193 -2.1062 1.2168 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.1353 -0.8560 4.4556 36 1 3.5182 -4.5147 1.3478 37 1 5.0939 -3.6660 1.3520 38 1 5.1723 -7.4104 3.3062 39 1 3.5654 -6.6587 2.9597 40 1 6.8250 -4.1020 3.7890 41 1 7.1126 -5.8046 4.2565 42 1 9.9027 -4.6688 3.7131 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032823357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:09 Heat of formation + Delta-G solvation = 42.946373 kcal Electronic energy + Delta-G solvation = -25083.995795 eV Core-core repulsion = 21577.694845 eV Total energy + Delta-G solvation = -3506.300950 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75323 -40.94650 -39.27497 -36.33472 -35.53888 -33.50613 -31.47913 -30.42902 -30.22588 -28.04056 -27.20274 -26.96012 -25.33442 -23.79196 -22.52405 -21.55332 -20.96324 -19.76542 -19.24227 -18.60721 -17.68964 -17.53331 -16.96319 -16.50804 -16.11392 -15.78820 -15.54570 -15.23817 -15.17520 -14.81547 -14.73067 -13.91537 -13.79074 -13.65702 -13.45840 -13.15928 -12.97595 -12.91476 -12.71403 -12.66668 -12.60764 -12.40452 -12.21649 -12.14642 -12.12787 -11.95858 -11.93075 -11.57158 -11.33649 -10.75339 -10.60253 -10.53771 -10.08751 -9.59912 -8.94259 -7.85228 -5.21722 -0.81965 0.12641 0.55213 1.34310 1.47523 1.50203 1.56337 1.77776 2.06569 2.48143 2.97722 3.28372 3.33601 3.51212 3.73334 3.77690 3.79490 3.97081 4.04573 4.13774 4.15848 4.19247 4.40429 4.49145 4.55717 4.71622 4.82152 4.82822 4.84450 4.95513 4.97671 5.00335 5.08380 5.11112 5.18801 5.34727 5.40540 5.42763 5.47577 5.64048 6.07582 6.40720 6.56548 6.90080 7.01078 7.69497 8.39118 9.25811 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.015902 B = 0.003839 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.368311 B = 7291.577829 C = 8090.790044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.022 4.022 3 C -0.139 4.139 4 C 0.050 3.950 5 N -0.493 5.493 6 C 0.117 3.883 7 C -0.318 4.318 8 C 0.601 3.399 9 O -0.580 6.580 10 N -0.605 5.605 11 C 0.079 3.921 12 C 0.142 3.858 13 H 0.144 0.856 14 C -0.128 4.128 15 C 0.102 3.898 16 H 0.119 0.881 17 C 0.186 3.814 18 N -0.615 5.615 19 C -0.232 4.232 20 H 0.099 0.901 21 C -0.070 4.070 22 N -0.957 5.957 23 Si 0.977 3.023 24 H -0.276 1.276 25 H -0.305 1.305 26 H -0.272 1.272 27 S 0.224 5.776 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.114 0.886 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.184 0.816 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.105 0.895 40 H -0.006 1.006 41 H 0.023 0.977 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.349 4.944 -10.827 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.044 4.044 3 C -0.198 4.198 4 C -0.224 4.224 5 N -0.207 5.207 6 C -0.042 4.042 7 C -0.442 4.442 8 C 0.390 3.610 9 O -0.463 6.463 10 N -0.336 5.336 11 C -0.047 4.047 12 C 0.036 3.964 13 H 0.162 0.838 14 C -0.167 4.167 15 C 0.000 4.000 16 H 0.137 0.863 17 C 0.060 3.940 18 N -0.339 5.339 19 C -0.361 4.361 20 H 0.117 0.883 21 C -0.262 4.262 22 N -0.606 5.606 23 Si 0.806 3.194 24 H -0.202 1.202 25 H -0.232 1.232 26 H -0.197 1.197 27 S 0.485 5.515 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.132 0.868 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.201 0.799 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.013 0.987 41 H 0.042 0.958 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -17.972 4.955 -10.936 21.614 hybrid contribution 1.464 0.529 1.478 2.147 sum -16.507 5.484 -9.458 19.800 Atomic orbital electron populations 1.21794 0.91573 1.02653 1.03421 1.20181 0.97880 0.96347 0.90022 1.21812 1.00856 0.93623 1.03486 1.28445 0.98175 0.98058 0.97673 1.66222 1.24774 1.30690 0.98974 1.22207 0.92439 0.88810 1.00735 1.25578 1.13807 1.06402 0.98412 1.16694 0.78055 0.79867 0.86368 1.90764 1.64028 1.76163 1.15340 1.49125 1.53554 1.21571 1.09387 1.23407 1.00849 1.00751 0.79659 1.23576 0.82814 0.91695 0.98357 0.83813 1.24100 1.01809 0.95902 0.94860 1.24295 0.92410 0.85680 0.97648 0.86324 1.21533 0.90473 0.96155 0.85803 1.45492 1.02396 1.78888 1.07120 1.19520 0.84261 1.38199 0.94099 0.88320 1.25670 1.01037 1.02270 0.97245 1.70151 1.24291 1.53452 1.12745 0.85167 0.78645 0.78291 0.77320 1.20211 1.23171 1.19735 1.84079 1.44001 1.24262 0.99184 0.89085 0.92386 0.92826 0.86837 0.93199 0.88951 0.92775 0.79889 0.88379 0.92244 0.89305 0.87715 0.98745 0.95840 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.17 71.98 0.66 -1.01 16 2 C -0.02 -0.33 3.35 -11.54 -0.04 -0.37 16 3 C -0.14 -1.97 9.17 71.98 0.66 -1.31 16 4 C 0.05 1.12 5.90 88.47 0.52 1.65 16 5 N -0.49 -13.26 10.49 -190.30 -2.00 -15.26 16 6 C 0.12 3.52 11.10 84.23 0.93 4.46 16 7 C -0.32 -10.22 6.41 23.88 0.15 -10.07 16 8 C 0.60 23.49 7.85 86.45 0.68 24.17 16 9 O -0.58 -26.37 17.24 -4.30 -0.07 -26.44 16 10 N -0.60 -22.45 2.95 -772.99 -2.28 -24.73 16 11 C 0.08 2.49 4.60 87.16 0.40 2.89 16 12 C 0.14 4.72 5.52 46.92 0.26 4.98 16 13 H 0.14 3.84 8.14 -2.38 -0.02 3.82 16 14 C -0.13 -3.84 6.80 33.46 0.23 -3.61 16 15 C 0.10 3.94 5.24 46.93 0.25 4.19 16 16 H 0.12 4.49 8.07 -2.39 -0.02 4.47 16 17 C 0.19 9.25 4.77 87.17 0.42 9.66 16 18 N -0.61 -28.84 3.03 -648.55 -1.96 -30.81 16 19 C -0.23 -12.01 10.37 84.03 0.87 -11.13 16 20 H 0.10 4.64 7.83 -2.91 -0.02 4.62 16 21 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 22 N -0.96 -58.01 10.56 21.65 0.23 -57.78 16 23 Si 0.98 44.54 29.55 68.60 2.03 46.56 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 S 0.22 5.39 18.92 -56.49 -1.07 4.32 16 28 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.11 1.19 8.12 -2.39 -0.02 1.17 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.18 5.33 8.06 -2.91 -0.02 5.31 16 36 H 0.10 2.36 6.82 -2.39 -0.02 2.35 16 37 H 0.06 2.13 7.38 -2.39 -0.02 2.11 16 38 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 40 H -0.01 -0.34 7.68 -2.39 -0.02 -0.36 16 41 H 0.02 1.30 7.46 -2.39 -0.02 1.29 16 42 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -73.06 352.81 2.35 -70.71 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.02 Total: 12.33 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 6.46 Total: 21.10 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -6.01 Total: -128.57 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.07 Total: -26.44 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 5.39 SS G_CDS: -1.07 Total: 4.32 kcal Total: -73.06 2.35 -70.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032823357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.652 kcal (2) G-P(sol) polarization free energy of solvation -73.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds