Wall clock time and date at job start Tue Mar 31 2020 12:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38282 * 119.94632 * 2 1 4 4 C 1.38121 * 120.05845 * 179.97438 * 3 2 1 5 5 C 1.38751 * 119.94246 * 0.02562 * 4 3 2 6 6 O 1.35905 * 120.05870 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99604 * 0.02562 * 6 5 4 8 8 C 1.50704 * 109.46992 * 179.97438 * 7 6 5 9 9 O 1.20821 * 119.99761 * 359.97438 * 8 7 6 10 10 O 1.34227 * 119.99635 * 180.02562 * 8 7 6 11 11 C 1.45200 * 116.99849 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47357 * 180.02562 * 11 10 8 13 13 O 1.21279 * 120.00117 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99952 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99969 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47280 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99865 * 0.02562 * 16 15 14 18 18 C 1.37883 * 120.00238 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99799 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 119.99860 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47233 * 89.99667 * 20 18 16 22 22 H 1.48499 * 109.47392 * 209.99983 * 20 18 16 23 23 H 1.48507 * 109.47371 * 330.00155 * 20 18 16 24 24 C 1.38715 * 119.88999 * 0.27515 * 5 4 3 25 25 C 1.50697 * 120.02923 * 179.72445 * 24 5 4 26 26 C 1.38164 * 119.93880 * 359.40263 * 24 5 4 27 27 H 1.09003 * 109.46874 * 90.00479 * 1 2 3 28 28 H 1.08999 * 109.47586 * 210.00475 * 1 2 3 29 29 H 1.09004 * 109.47443 * 330.00381 * 1 2 3 30 30 H 1.08007 * 119.97230 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.02792 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.47352 * 299.99771 * 7 6 5 33 33 H 1.08999 * 109.47144 * 59.99795 * 7 6 5 34 34 H 1.09005 * 109.46884 * 299.99985 * 11 10 8 35 35 H 1.08996 * 109.47616 * 59.99443 * 11 10 8 36 36 H 0.96999 * 120.00050 * 0.02562 * 14 12 11 37 37 H 1.08997 * 109.47627 * 300.00650 * 15 14 12 38 38 H 1.09002 * 109.47012 * 60.00397 * 15 14 12 39 39 H 0.97005 * 119.99354 * 179.97438 * 19 18 16 40 40 H 1.09007 * 109.47246 * 89.99992 * 25 24 5 41 41 H 1.09000 * 109.47282 * 209.99769 * 25 24 5 42 42 H 1.08999 * 109.47028 * 329.99951 * 25 24 5 43 43 H 1.08003 * 119.96792 * 180.31516 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 0.0000 0.0005 6 8 5.6324 -0.0001 0.0016 7 6 6.2812 1.2731 0.0032 8 6 7.7752 1.0756 0.0048 9 8 8.2369 -0.0409 0.0051 10 8 8.5928 2.1401 0.0071 11 6 10.0204 1.8748 0.0079 12 6 10.7739 3.1799 0.0111 13 8 10.1676 4.2302 0.0120 14 7 12.1217 3.1799 0.0129 15 6 12.8542 4.4486 0.0154 16 6 14.3358 4.1732 0.0177 17 1 14.6958 3.1549 0.0169 18 6 15.2319 5.2211 0.0207 19 7 16.5249 4.9807 0.0222 20 14 14.6092 6.9823 0.0228 21 1 14.4421 7.4466 1.4234 22 1 15.5884 7.8543 -0.6743 23 1 13.3020 7.0461 -0.6791 24 6 3.5786 -1.2007 -0.0058 25 6 4.3302 -2.5068 -0.0121 26 6 2.1970 -1.1979 0.0004 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6559 2.1328 -0.0004 31 1 4.1171 2.1370 0.0001 32 1 5.9891 1.8309 -0.8865 33 1 5.9876 1.8293 0.8935 34 1 10.2829 1.3020 0.8974 35 1 10.2846 1.3045 -0.8825 36 1 12.6066 2.3398 0.0118 37 1 12.5921 5.0213 -0.8742 38 1 12.5897 5.0190 0.9057 39 1 17.1552 5.7181 0.0240 40 1 4.5111 -2.8270 1.0141 41 1 3.7402 -3.2630 -0.5299 42 1 5.2830 -2.3753 -0.5249 43 1 1.6557 -2.1325 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010090115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:44 Heat of formation + Delta-G solvation = -159.168043 kcal Electronic energy + Delta-G solvation = -25199.602155 eV Core-core repulsion = 21209.491245 eV Total energy + Delta-G solvation = -3990.110910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.01172 -41.21068 -40.41907 -38.78359 -37.57397 -36.22025 -34.47464 -34.21364 -32.54381 -31.53682 -30.28145 -28.54411 -28.11450 -26.86403 -24.30811 -23.54630 -22.06680 -21.75176 -21.64958 -19.46191 -19.45089 -18.55428 -18.26318 -18.24309 -17.45555 -17.01317 -16.95717 -16.55743 -16.10389 -15.94564 -15.69536 -15.28429 -14.90043 -14.87001 -14.50851 -14.39877 -14.18550 -14.08406 -13.98416 -13.77695 -13.57533 -13.32159 -13.09208 -12.85284 -12.74017 -12.71251 -12.23106 -12.01320 -11.94620 -11.93504 -11.84874 -11.68002 -11.60859 -11.00834 -10.92797 -10.05914 -9.77467 -8.98766 -8.40417 -6.48288 0.35945 0.41278 0.74453 0.89206 1.33739 1.36539 1.47208 1.49466 2.11805 2.28131 2.61092 2.73571 2.95089 3.40710 3.62968 3.78519 3.87234 3.92611 3.94497 4.02492 4.02645 4.05861 4.32344 4.38524 4.54270 4.68886 4.73629 4.78618 4.79422 4.90322 4.99922 5.01754 5.05670 5.16011 5.23040 5.33292 5.35726 5.38034 5.47061 5.68874 5.82096 6.04504 6.27716 6.44636 6.51911 6.69583 7.10029 7.25261 8.74122 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.034809 B = 0.001777 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.193118 B =15751.631994 C =16519.468129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.124 4.124 3 C -0.094 4.094 4 C -0.205 4.205 5 C 0.098 3.902 6 O -0.314 6.314 7 C 0.072 3.928 8 C 0.469 3.531 9 O -0.515 6.515 10 O -0.337 6.337 11 C 0.059 3.941 12 C 0.506 3.494 13 O -0.576 6.576 14 N -0.697 5.697 15 C 0.232 3.768 16 C -0.550 4.550 17 H 0.061 0.939 18 C 0.027 3.973 19 N -0.930 5.930 20 Si 0.938 3.062 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.125 4.125 25 C -0.105 4.105 26 C -0.091 4.091 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.413 0.587 37 H 0.019 0.981 38 H 0.017 0.983 39 H 0.273 0.727 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.096 -11.890 -0.066 35.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.124 4.124 3 C -0.112 4.112 4 C -0.223 4.223 5 C 0.054 3.946 6 O -0.228 6.228 7 C -0.004 4.004 8 C 0.312 3.688 9 O -0.402 6.402 10 O -0.253 6.253 11 C -0.018 4.018 12 C 0.292 3.708 13 O -0.457 6.457 14 N -0.348 5.348 15 C 0.109 3.891 16 C -0.588 4.588 17 H 0.079 0.921 18 C -0.174 4.174 19 N -0.569 5.569 20 Si 0.761 3.239 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.182 1.182 24 C -0.126 4.126 25 C -0.162 4.162 26 C -0.108 4.108 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.164 0.836 31 H 0.166 0.834 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.249 0.751 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -33.009 -11.554 -0.065 34.972 hybrid contribution 0.998 0.531 0.014 1.131 sum -32.010 -11.022 -0.052 33.855 Atomic orbital electron populations 1.20776 0.89230 1.03599 1.02941 1.20211 0.97665 0.92784 1.01727 1.21153 0.93099 0.98860 0.98058 1.21529 0.96168 0.97012 1.07636 1.19009 0.80800 0.94979 0.99798 1.86008 1.17618 1.29655 1.89540 1.22035 0.84407 0.85915 1.08042 1.23476 0.90597 0.82325 0.72435 1.90712 1.78007 1.26278 1.45233 1.86475 1.18217 1.36718 1.83886 1.22787 0.76780 0.94749 1.07451 1.20497 0.82844 0.90758 0.76709 1.90683 1.68806 1.34785 1.51386 1.45860 1.04982 1.11292 1.72653 1.19182 0.90482 0.83192 0.96256 1.21285 0.89506 0.95082 1.52917 0.92103 1.25603 0.94732 1.03527 0.93511 1.69986 1.02369 1.34053 1.50499 0.85852 0.79015 0.79512 0.79490 1.18965 1.19955 1.18179 1.19539 0.94079 0.93684 1.05297 1.20619 0.99652 0.93386 1.02533 1.21038 0.91747 0.99108 0.98942 0.90611 0.90795 0.90760 0.83646 0.83384 0.84943 0.84931 0.85690 0.85692 0.75066 0.96355 0.96469 0.91824 0.91209 0.89925 0.92672 0.83515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 71.23 0.71 -0.07 16 2 C -0.12 -1.55 5.88 -19.85 -0.12 -1.67 16 3 C -0.09 -1.20 9.69 22.25 0.22 -0.99 16 4 C -0.20 -3.04 9.04 22.36 0.20 -2.84 16 5 C 0.10 1.87 6.66 22.51 0.15 2.02 16 6 O -0.31 -6.78 8.72 -73.40 -0.64 -7.42 16 7 C 0.07 1.21 5.33 71.24 0.38 1.59 16 8 C 0.47 11.21 8.03 71.24 0.57 11.79 16 9 O -0.51 -15.16 16.25 28.41 0.46 -14.69 16 10 O -0.34 -8.99 9.76 -45.04 -0.44 -9.43 16 11 C 0.06 1.53 5.94 71.24 0.42 1.95 16 12 C 0.51 18.02 7.91 87.66 0.69 18.72 16 13 O -0.58 -25.29 16.50 15.77 0.26 -25.03 16 14 N -0.70 -26.33 5.55 -466.80 -2.59 -28.92 16 15 C 0.23 10.96 4.50 85.63 0.38 11.34 16 16 C -0.55 -29.60 9.83 25.60 0.25 -29.35 16 17 H 0.06 3.44 7.84 -2.91 -0.02 3.41 16 18 C 0.03 1.49 5.47 84.66 0.46 1.95 16 19 N -0.93 -54.82 13.96 21.45 0.30 -54.53 16 20 Si 0.94 43.01 27.47 68.60 1.88 44.89 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.26 -11.61 6.54 99.48 0.65 -10.96 16 24 C -0.13 -2.24 5.89 -19.77 -0.12 -2.35 16 25 C -0.11 -1.72 9.79 71.23 0.70 -1.03 16 26 C -0.09 -1.26 9.35 22.25 0.21 -1.05 16 27 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 0.41 8.08 -2.39 -0.02 0.39 16 29 H 0.07 0.41 8.08 -2.38 -0.02 0.40 16 30 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 31 H 0.15 1.54 6.30 -2.91 -0.02 1.53 16 32 H 0.13 1.59 7.66 -2.39 -0.02 1.58 16 33 H 0.13 1.60 7.66 -2.39 -0.02 1.58 16 34 H 0.13 2.72 8.13 -2.38 -0.02 2.70 16 35 H 0.13 2.72 8.13 -2.39 -0.02 2.70 16 36 H 0.41 13.35 8.32 -92.71 -0.77 12.58 16 37 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 38 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 39 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 40 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 42 H 0.05 1.10 7.53 -2.39 -0.02 1.08 16 43 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -74.25 373.60 4.57 -69.68 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.21 Total: 15.44 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.12 Total: 10.01 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -2.29 Total: -83.45 kcal Atomic # 8 Polarization: -56.22 SS G_CDS: -0.36 Total: -56.58 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.89 kcal Total: -74.25 4.57 -69.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010090115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.489 kcal (2) G-P(sol) polarization free energy of solvation -74.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds