Wall clock time and date at job start Tue Mar 31 2020 12:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00004 * 2 1 4 4 H 1.48507 * 109.47386 * 240.00001 * 3 2 1 5 5 H 1.48502 * 109.47080 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47126 * 119.99669 * 3 2 1 7 7 C 1.37875 * 120.00619 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00961 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99584 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47173 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47021 * 179.97438 * 10 9 7 12 12 C 1.34231 * 117.00003 * 179.97438 * 11 10 9 13 13 O 1.20830 * 119.99601 * 0.02562 * 12 11 10 14 14 C 1.50692 * 120.00085 * 180.02562 * 12 11 10 15 15 H 1.09001 * 109.58665 * 3.96541 * 14 12 11 16 16 C 1.53191 * 109.70242 * 243.61205 * 14 12 11 17 17 C 1.53040 * 109.31389 * 185.50508 * 16 14 12 18 18 C 1.53041 * 109.53607 * 61.36685 * 17 16 14 19 19 C 1.53620 * 109.24117 * 298.50941 * 18 17 16 20 20 N 1.46919 * 109.59028 * 124.24916 * 14 12 11 21 21 C 1.34780 * 120.63285 * 353.51892 * 20 14 12 22 22 O 1.21696 * 119.99684 * 5.67774 * 21 20 14 23 23 C 1.46655 * 120.00453 * 185.68155 * 21 20 14 24 24 C 1.36536 * 125.98771 * 187.42063 * 23 21 20 25 25 C 1.40368 * 106.70790 * 180.02562 * 24 23 21 26 26 C 1.35128 * 107.11426 * 0.02562 * 25 24 23 27 27 O 1.33935 * 108.76669 * 359.97438 * 26 25 24 28 28 H 0.97001 * 119.99958 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47051 * 59.99591 * 9 7 2 30 30 H 1.09006 * 109.46521 * 299.99865 * 9 7 2 31 31 H 1.08995 * 109.47272 * 59.99356 * 10 9 7 32 32 H 1.09002 * 109.46975 * 300.00029 * 10 9 7 33 33 H 1.09000 * 109.49948 * 305.46110 * 16 14 12 34 34 H 1.09002 * 109.50243 * 65.52399 * 16 14 12 35 35 H 1.09006 * 109.46031 * 181.38230 * 17 16 14 36 36 H 1.09000 * 109.46125 * 301.34410 * 17 16 14 37 37 H 1.08994 * 109.49981 * 58.58894 * 18 17 16 38 38 H 1.09004 * 109.49613 * 178.68239 * 18 17 16 39 39 H 1.09006 * 109.74001 * 295.12136 * 19 18 17 40 40 H 1.09004 * 109.66883 * 174.55065 * 19 18 17 41 41 H 1.08003 * 126.64786 * 0.05850 * 24 23 21 42 42 H 1.08000 * 126.44208 * 180.02562 * 25 24 23 43 43 H 1.07998 * 125.61579 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 8 1.5194 -4.9195 0.0024 12 6 2.2505 -6.0453 0.0030 13 8 3.4571 -5.9819 0.0035 14 6 1.5664 -7.3880 0.0031 15 1 0.4877 -7.2485 -0.0684 16 6 1.9025 -8.1388 1.2954 17 6 1.3180 -9.5515 1.2267 18 6 1.9434 -10.3075 0.0522 19 6 1.6032 -9.5797 -1.2571 20 7 2.0373 -8.1808 -1.1406 21 6 2.8478 -7.6339 -2.0682 22 8 3.2797 -6.5071 -1.9105 23 6 3.2091 -8.3964 -3.2677 24 6 4.1253 -8.0243 -4.2092 25 6 4.1499 -9.0441 -5.1735 26 6 3.2585 -9.9817 -4.7835 27 8 2.6938 -9.5880 -3.6346 28 1 -0.4850 0.8401 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5566 0.8904 31 1 2.8714 -3.6039 0.8922 32 1 2.8727 -3.6047 -0.8877 33 1 2.9847 -8.1980 1.4108 34 1 1.4745 -7.6085 2.1462 35 1 1.5347 -10.0797 2.1553 36 1 0.2387 -9.4915 1.0866 37 1 3.0253 -10.3464 0.1793 38 1 1.5441 -11.3212 0.0180 39 1 0.5275 -9.6153 -1.4294 40 1 2.1243 -10.0560 -2.0877 41 1 4.7169 -7.1207 -4.2113 42 1 4.7655 -9.0736 -6.0603 43 1 3.0383 -10.8981 -5.3109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062630583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:29 Heat of formation + Delta-G solvation = -82.929336 kcal Electronic energy + Delta-G solvation = -27636.233698 eV Core-core repulsion = 23649.428746 eV Total energy + Delta-G solvation = -3986.804952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.99191 -40.90785 -38.81462 -37.60603 -35.72343 -33.65188 -33.24785 -32.98837 -31.90845 -30.10670 -29.95110 -26.45232 -25.02900 -24.08084 -23.36175 -22.10873 -21.21684 -20.99960 -20.47486 -19.60028 -18.00681 -17.32057 -16.76271 -16.61545 -16.30405 -16.02854 -15.50703 -15.35942 -15.17089 -14.55772 -14.44368 -14.18207 -13.96740 -13.64352 -13.48365 -13.20033 -13.04192 -12.90616 -12.53088 -12.44710 -12.26225 -11.72485 -11.39402 -11.19354 -11.16879 -10.92784 -10.89078 -10.69639 -10.59377 -10.27309 -10.01170 -9.69409 -9.43011 -9.33980 -9.20746 -8.96044 -8.80664 -8.36160 -6.02816 -4.06372 0.87111 2.11484 2.18573 2.62479 2.91313 3.24320 3.28993 3.35558 3.38697 3.43404 4.26562 4.45109 4.45906 4.55140 4.62466 4.67049 4.72722 4.77460 4.96689 5.16054 5.18025 5.33491 5.36615 5.43148 5.47122 5.51871 5.55178 5.57354 5.68768 5.77213 5.82697 6.03711 6.09271 6.22298 6.26689 6.36827 6.57308 6.80297 7.06602 7.24673 7.67342 7.74011 7.91227 7.98343 8.32085 8.54283 8.99065 9.57257 11.08843 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.003181 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.842189 B = 8801.061557 C =10129.250030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.082 3.918 11 O -0.360 6.360 12 C 0.459 3.541 13 O -0.479 6.479 14 C 0.156 3.844 15 H 0.107 0.893 16 C -0.125 4.125 17 C -0.117 4.117 18 C -0.136 4.136 19 C 0.098 3.902 20 N -0.600 5.600 21 C 0.588 3.412 22 O -0.473 6.473 23 C -0.070 4.070 24 C -0.119 4.119 25 C -0.221 4.221 26 C -0.021 4.021 27 O -0.161 6.161 28 H 0.263 0.737 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.161 0.839 42 H 0.156 0.844 43 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.467 -27.884 -5.211 28.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.009 3.991 11 O -0.276 6.276 12 C 0.300 3.700 13 O -0.365 6.365 14 C 0.052 3.948 15 H 0.124 0.876 16 C -0.163 4.163 17 C -0.155 4.155 18 C -0.174 4.174 19 C -0.023 4.023 20 N -0.336 5.336 21 C 0.375 3.625 22 O -0.347 6.347 23 C -0.121 4.121 24 C -0.139 4.139 25 C -0.240 4.240 26 C -0.090 4.090 27 O -0.058 6.058 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.179 0.821 42 H 0.173 0.827 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.696 -27.191 -4.934 27.766 hybrid contribution 0.695 0.917 -0.324 1.195 sum 3.391 -26.274 -5.259 27.009 Atomic orbital electron populations 1.69967 1.06074 1.26961 1.50038 1.24976 0.94908 0.99312 0.94975 0.86540 0.79482 0.82527 0.78785 1.20077 1.21162 1.20081 1.20970 0.93173 0.90192 1.51864 0.92332 1.19155 0.94219 0.89137 0.98654 1.23537 0.96155 0.78505 1.00863 1.86444 1.42345 1.15659 1.83183 1.22520 0.86690 0.86513 0.74324 1.90633 1.15513 1.87636 1.42715 1.20756 0.99673 0.87091 0.87249 0.87556 1.21891 1.03159 0.96009 0.95243 1.21523 1.00530 0.94692 0.98732 1.22030 1.01895 0.99145 0.94357 1.22339 1.00990 0.79573 0.99389 1.47756 1.49666 1.13037 1.23152 1.16930 0.78829 0.85834 0.80873 1.91209 1.52025 1.17154 1.74316 1.22112 1.02686 0.87493 0.99818 1.22028 0.98242 1.00755 0.92891 1.21865 1.03833 0.95574 1.02709 1.24494 0.96406 1.00978 0.87091 1.84187 1.54928 1.31900 1.34749 0.92748 0.95491 0.95509 0.92718 0.92214 0.90152 0.89480 0.90797 0.91093 0.91206 0.90240 0.90637 0.87269 0.82146 0.82658 0.77504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -15.49 9.11 -34.44 -0.31 -15.81 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 9 C 0.03 0.71 5.35 -27.88 -0.15 0.56 16 10 C 0.08 2.02 5.40 37.16 0.20 2.23 16 11 O -0.36 -8.04 10.22 -39.26 -0.40 -8.44 16 12 C 0.46 9.10 5.02 36.00 0.18 9.28 16 13 O -0.48 -10.79 13.53 -27.27 -0.37 -11.16 16 14 C 0.16 2.21 3.33 -68.76 -0.23 1.98 16 15 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 16 C -0.12 -1.37 5.34 -26.61 -0.14 -1.51 16 17 C -0.12 -0.87 5.88 -26.69 -0.16 -1.03 16 18 C -0.14 -0.97 6.10 -26.39 -0.16 -1.13 16 19 C 0.10 0.86 6.18 -3.49 -0.02 0.84 16 20 N -0.60 -7.97 2.97 -167.81 -0.50 -8.47 16 21 C 0.59 9.51 7.48 -12.86 -0.10 9.42 16 22 O -0.47 -9.87 11.89 -20.52 -0.24 -10.12 16 23 C -0.07 -0.91 6.79 -36.80 -0.25 -1.16 16 24 C -0.12 -1.44 10.63 -39.39 -0.42 -1.86 16 25 C -0.22 -1.91 10.87 -39.89 -0.43 -2.35 16 26 C -0.02 -0.15 12.08 29.63 0.36 0.21 16 27 O -0.16 -1.58 7.20 4.99 0.04 -1.54 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 1.32 8.13 -51.93 -0.42 0.90 16 32 H 0.06 1.53 8.13 -51.93 -0.42 1.11 16 33 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.11 0.93 4.13 -53.64 -0.22 0.70 16 41 H 0.16 2.00 8.06 -52.48 -0.42 1.58 16 42 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.21 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 356.92 15.07 5.38 5.38 Total: -1.00 -36.82 356.92 -8.21 -45.03 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -6.10 Total: -2.64 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.73 Total: 1.34 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.24 Total: -34.99 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.98 Total: -31.26 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.82 -8.21 -45.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062630583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.904 kcal (2) G-P(sol) polarization free energy of solvation -36.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds