Wall clock time and date at job start Tue Mar 31 2020 13:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47090 * 2 1 4 4 C 1.52996 * 109.47098 * 240.00397 * 2 1 3 5 5 C 1.50700 * 109.47231 * 120.00047 * 2 1 3 6 6 C 1.38388 * 119.84699 * 355.63100 * 5 2 1 7 7 C 1.37929 * 120.14667 * 180.02562 * 6 5 2 8 8 C 1.39643 * 119.84898 * 359.97438 * 7 6 5 9 9 C 1.47723 * 120.14800 * 179.97438 * 8 7 6 10 10 O 1.21470 * 120.00200 * 180.02562 * 9 8 7 11 11 O 1.34711 * 120.00287 * 0.02562 * 9 8 7 12 12 C 1.45196 * 117.00247 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46969 * 179.97438 * 12 11 9 14 14 C 1.50705 * 109.46898 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00121 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99673 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 119.99957 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47350 * 59.99816 * 18 16 14 20 20 H 1.48493 * 109.47371 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47286 * 300.00527 * 18 16 14 22 22 C 1.39610 * 119.70209 * 0.25679 * 8 7 6 23 23 C 1.37969 * 119.84700 * 359.46611 * 22 8 7 24 24 N 1.48015 * 119.92578 * 180.27476 * 23 22 8 25 25 O 1.21795 * 119.99966 * 6.93688 * 24 23 22 26 26 O 1.21800 * 119.99980 * 186.93174 * 24 23 22 27 27 H 1.09004 * 109.46738 * 299.99909 * 1 2 3 28 28 H 1.09004 * 109.46756 * 59.99725 * 1 2 3 29 29 H 1.08992 * 109.46924 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47041 * 151.50176 * 3 2 1 31 31 H 1.09007 * 109.47130 * 271.49896 * 3 2 1 32 32 H 1.09002 * 109.47054 * 31.50036 * 3 2 1 33 33 H 1.09002 * 109.47171 * 335.16236 * 4 2 1 34 34 H 1.08998 * 109.47627 * 95.16391 * 4 2 1 35 35 H 1.09006 * 109.47047 * 215.16488 * 4 2 1 36 36 H 1.07997 * 119.92705 * 359.97438 * 6 5 2 37 37 H 1.07999 * 120.06922 * 179.97438 * 7 6 5 38 38 H 1.09004 * 109.46920 * 60.00704 * 12 11 9 39 39 H 1.08999 * 109.47395 * 300.00217 * 12 11 9 40 40 H 1.08999 * 109.47405 * 300.00413 * 13 12 11 41 41 H 1.09002 * 109.47279 * 60.00535 * 13 12 11 42 42 H 0.97001 * 119.99435 * 179.97438 * 17 16 14 43 43 H 1.08003 * 120.07681 * 179.75075 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1336 -1.1554 2.1840 7 6 1.5866 -1.8058 3.3128 8 6 2.9556 -2.0154 3.4918 9 6 3.4481 -2.7108 4.6985 10 8 4.6395 -2.8913 4.8518 11 8 2.5760 -3.1448 5.6290 12 6 3.1308 -3.8203 6.7884 13 6 1.9967 -4.2366 7.7272 14 6 2.5725 -4.9382 8.9303 15 1 3.6405 -5.0732 9.0168 16 6 1.7359 -5.4068 9.9211 17 7 0.4354 -5.2418 9.8159 18 14 2.4496 -6.2758 11.4125 19 1 3.3719 -5.3567 12.1267 20 1 1.3490 -6.6800 12.3237 21 1 3.1957 -7.4821 10.9727 22 6 3.8570 -1.5596 2.5282 23 6 3.3899 -0.9155 1.4011 24 7 4.3437 -0.4370 0.3753 25 8 5.5248 -0.7211 0.4624 26 8 3.9473 0.2409 -0.5558 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.0126 1.4841 0.4903 31 1 2.1358 1.7941 -1.0274 32 1 1.3350 2.0772 0.5370 33 1 1.2818 -1.4217 -1.5994 34 1 2.2483 0.0093 -2.0310 35 1 2.9532 -1.2650 -1.0075 36 1 0.0752 -0.9922 2.0445 37 1 0.8841 -2.1522 4.0564 38 1 3.8069 -3.1452 7.3131 39 1 3.6791 -4.7053 6.4655 40 1 1.4488 -3.3514 8.0501 41 1 1.3201 -4.9115 7.2029 42 1 -0.1532 -5.5718 10.5127 43 1 4.9174 -1.7149 2.6625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194479240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:22 Heat of formation + Delta-G solvation = -64.181799 kcal Electronic energy + Delta-G solvation = -26793.110065 eV Core-core repulsion = 22807.118068 eV Total energy + Delta-G solvation = -3985.991998 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.73223 -41.85491 -40.68964 -38.54735 -37.81137 -36.87472 -35.48322 -33.44292 -32.55994 -31.86947 -28.39422 -28.30807 -27.82088 -27.27487 -25.79989 -23.47330 -23.17980 -22.48875 -20.89479 -20.37892 -19.79200 -18.95180 -18.81554 -18.09565 -17.86112 -17.68947 -16.87979 -16.54315 -16.50322 -15.69307 -15.51954 -15.16712 -14.90901 -14.84881 -14.38930 -14.24123 -14.12121 -13.52189 -13.42137 -13.19191 -13.09518 -12.95077 -12.63348 -12.63100 -12.57380 -12.56522 -12.32065 -12.05705 -11.92301 -11.75453 -11.62647 -11.56807 -11.53603 -11.44959 -11.42886 -10.84817 -10.61922 -10.44135 -8.28764 -6.41254 -1.32806 -0.80153 0.16475 0.21846 1.12325 1.37382 1.43437 1.44981 1.53135 2.14251 2.38141 2.97274 3.06257 3.14450 3.34453 3.48957 3.53271 3.78478 3.95707 4.00134 4.14615 4.17744 4.20353 4.34977 4.42941 4.61278 4.64475 4.69483 4.76175 4.82274 4.90372 4.93399 5.03949 5.09195 5.13102 5.14156 5.28948 5.36695 5.41692 5.42674 5.45312 5.45360 5.70627 6.04651 6.45671 6.51490 6.71720 7.28419 8.83365 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026024 B = 0.002396 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.660682 B =11682.512441 C =12554.988230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 C -0.128 4.128 4 C -0.129 4.129 5 C 0.029 3.971 6 C -0.116 4.116 7 C 0.004 3.996 8 C -0.135 4.135 9 C 0.505 3.495 10 O -0.534 6.534 11 O -0.348 6.348 12 C 0.090 3.910 13 C 0.033 3.967 14 C -0.553 4.553 15 H 0.063 0.937 16 C 0.010 3.990 17 N -0.924 5.924 18 Si 0.969 3.031 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.267 1.267 22 C 0.000 4.000 23 C -0.065 4.065 24 N 0.024 4.976 25 O -0.249 6.249 26 O -0.079 6.079 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.022 0.978 36 H 0.201 0.799 37 H 0.176 0.824 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.012 0.988 41 H 0.011 0.989 42 H 0.268 0.732 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.131 12.845 -22.596 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 C -0.185 4.185 4 C -0.186 4.186 5 C 0.028 3.972 6 C -0.133 4.133 7 C -0.014 4.014 8 C -0.137 4.137 9 C 0.350 3.650 10 O -0.426 6.426 11 O -0.264 6.264 12 C 0.017 3.983 13 C -0.004 4.004 14 C -0.591 4.591 15 H 0.081 0.919 16 C -0.190 4.190 17 N -0.563 5.563 18 Si 0.793 3.207 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.192 1.192 22 C -0.019 4.019 23 C -0.148 4.148 24 N 0.536 4.464 25 O -0.438 6.438 26 O -0.313 6.313 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.218 0.782 37 H 0.194 0.806 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.077 0.923 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.209 12.410 -21.836 25.467 hybrid contribution 1.324 -0.621 0.892 1.713 sum -2.885 11.789 -20.944 24.207 Atomic orbital electron populations 1.22133 0.90286 1.03620 1.04291 1.19941 0.98501 0.95601 0.89765 1.22125 0.99592 0.92760 1.04048 1.22216 0.99127 1.00688 0.96580 1.20689 0.88688 0.90653 0.97208 1.21742 1.02627 0.97747 0.91218 1.22303 0.93379 0.88765 0.96971 1.18872 0.95238 1.05946 0.93611 1.21287 0.84261 0.76064 0.83349 1.90831 1.18388 1.55175 1.78190 1.86514 1.40356 1.68161 1.31389 1.23304 0.97899 0.94978 0.82099 1.18975 0.93030 0.96083 0.92328 1.21337 0.94028 1.38478 1.05210 0.91872 1.25885 0.95122 0.96446 1.01504 1.70061 1.03842 1.46801 1.35574 0.85438 0.78061 0.78993 0.78215 1.19204 1.20428 1.19218 1.20878 1.02042 0.89666 0.89349 1.20684 0.89844 1.11664 0.92607 1.43467 1.01532 0.99815 1.01570 1.94602 1.00755 1.64776 1.83704 1.94483 1.81670 1.31396 1.23759 0.90432 0.89935 0.90902 0.94777 0.89650 0.91420 0.91501 0.89510 0.95929 0.78208 0.80638 0.91957 0.91954 0.96999 0.97012 0.92275 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 6.77 71.98 0.49 -0.29 16 2 C -0.04 -0.43 0.75 -52.93 -0.04 -0.47 16 3 C -0.13 -1.54 7.54 71.98 0.54 -1.00 16 4 C -0.13 -1.67 7.54 71.98 0.54 -1.13 16 5 C 0.03 0.46 4.73 -19.80 -0.09 0.37 16 6 C -0.12 -1.42 8.97 22.23 0.20 -1.22 16 7 C 0.00 0.07 9.62 22.54 0.22 0.28 16 8 C -0.13 -3.42 5.87 -20.10 -0.12 -3.54 16 9 C 0.50 17.10 7.90 70.33 0.56 17.66 16 10 O -0.53 -21.23 16.14 19.93 0.32 -20.91 16 11 O -0.35 -12.83 9.47 -56.21 -0.53 -13.36 16 12 C 0.09 3.85 5.41 71.98 0.39 4.24 16 13 C 0.03 1.68 5.35 29.85 0.16 1.84 16 14 C -0.55 -30.38 9.11 25.60 0.23 -30.15 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 16 C 0.01 0.54 5.46 84.66 0.46 1.01 16 17 N -0.92 -53.47 13.29 21.45 0.28 -53.19 16 18 Si 0.97 42.61 29.54 68.60 2.03 44.64 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 C 0.00 0.00 9.10 22.54 0.21 0.21 16 23 C -0.06 -1.45 5.93 36.34 0.22 -1.23 16 24 N 0.02 0.60 3.57 -46.55 -0.17 0.43 16 25 O -0.25 -7.61 18.46 18.89 0.35 -7.26 16 26 O -0.08 -1.73 10.14 18.89 0.19 -1.54 16 27 H 0.08 0.25 7.27 -2.39 -0.02 0.23 16 28 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 29 H 0.07 0.30 7.69 -2.39 -0.02 0.28 16 30 H 0.03 0.58 5.45 -2.39 -0.01 0.57 16 31 H 0.08 0.86 7.30 -2.38 -0.02 0.84 16 32 H 0.07 0.61 7.84 -2.39 -0.02 0.60 16 33 H 0.07 0.68 7.75 -2.39 -0.02 0.66 16 34 H 0.09 0.98 6.95 -2.39 -0.02 0.97 16 35 H 0.02 0.41 5.07 -2.38 -0.01 0.40 16 36 H 0.20 0.90 5.88 -2.91 -0.02 0.88 16 37 H 0.18 2.72 7.61 -2.91 -0.02 2.70 16 38 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 39 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 43 H 0.15 4.26 7.21 -2.91 -0.02 4.24 16 Total: -1.00 -68.39 354.73 7.47 -60.92 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.04 Total: 3.69 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 3.96 Total: -13.42 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.12 Total: -52.76 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: 0.33 Total: -43.06 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -68.39 7.47 -60.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194479240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.263 kcal (2) G-P(sol) polarization free energy of solvation -68.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds