Wall clock time and date at job start Tue Mar 31 2020 13:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35250 * 126.06805 * 2 1 4 4 C 1.40424 * 107.86228 * 180.25896 * 3 2 1 5 5 N 1.39985 * 125.97822 * 179.70844 * 4 3 2 6 6 C 1.46501 * 119.99746 * 0.02562 * 5 4 3 7 7 H 1.08998 * 109.47199 * 35.00061 * 6 5 4 8 8 C 1.53005 * 109.47059 * 275.00492 * 6 5 4 9 9 C 1.50698 * 109.47089 * 155.00745 * 6 5 4 10 10 C 1.38263 * 119.96614 * 39.72214 * 9 6 5 11 11 C 1.38216 * 120.06891 * 179.72603 * 10 9 6 12 12 C 1.38414 * 119.99940 * 0.55445 * 11 10 9 13 13 F 1.35101 * 120.03400 * 179.74985 * 12 11 10 14 14 C 1.38648 * 119.92667 * 359.71968 * 12 11 10 15 15 F 1.35107 * 120.02783 * 180.02562 * 14 12 11 16 16 C 1.38215 * 119.96450 * 219.99920 * 9 6 5 17 17 N 1.31231 * 108.04682 * 359.73783 * 4 3 2 18 18 N 1.34965 * 126.06836 * 179.80680 * 2 1 3 19 19 C 1.46491 * 125.97174 * 0.02562 * 18 2 1 20 20 C 1.50702 * 109.46957 * 269.71224 * 19 18 2 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 H 1.09001 * 109.47308 * 270.18983 * 1 2 3 29 29 H 1.09000 * 109.47245 * 30.18872 * 1 2 3 30 30 H 1.09000 * 109.46772 * 150.19009 * 1 2 3 31 31 H 1.07999 * 126.06894 * 0.04103 * 3 2 1 32 32 H 0.97003 * 120.00118 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47269 * 180.02562 * 8 6 5 34 34 H 1.09005 * 109.47377 * 299.99980 * 8 6 5 35 35 H 1.08992 * 109.47030 * 59.99990 * 8 6 5 36 36 H 1.07997 * 119.96123 * 0.02562 * 10 9 6 37 37 H 1.07996 * 119.99990 * 180.27592 * 11 10 9 38 38 H 1.08001 * 119.99724 * 0.02562 * 16 9 6 39 39 H 1.09004 * 109.47166 * 149.71490 * 19 18 2 40 40 H 1.08994 * 109.47507 * 29.71196 * 19 18 2 41 41 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0933 0.0000 4 6 3.6373 0.6545 -0.0060 5 7 4.7724 1.4737 -0.0138 6 6 4.6238 2.9312 -0.0156 7 1 3.7528 3.2084 0.5781 8 6 4.4390 3.4232 -1.4525 9 6 5.8573 3.5625 0.5768 10 6 7.1062 3.0477 0.2819 11 6 8.2393 3.6286 0.8195 12 6 8.1237 4.7198 1.6632 13 9 9.2305 5.2850 2.1931 14 6 6.8710 5.2325 1.9634 15 9 6.7559 6.2978 2.7863 16 6 5.7386 4.6521 1.4189 17 7 3.6336 -0.6578 -0.0038 18 7 2.3016 -1.0909 0.0037 19 6 1.8499 -2.4845 0.0078 20 6 1.7013 -2.9601 1.4301 21 1 1.9210 -2.2910 2.2490 22 6 1.2789 -4.2474 1.6860 23 7 1.0111 -5.0620 0.6888 24 14 1.0874 -4.8345 3.4489 25 1 -0.2937 -4.5536 3.9169 26 1 1.3447 -6.2955 3.5148 27 1 2.0587 -4.1212 4.3166 28 1 -0.3634 0.0034 1.0277 29 1 -0.3634 0.8883 -0.5168 30 1 -0.3633 -0.8917 -0.5109 31 1 1.9720 2.1212 0.0006 32 1 5.6573 1.0763 -0.0179 33 1 4.3289 4.5076 -1.4540 34 1 5.3100 3.1460 -2.0464 35 1 3.5469 2.9665 -1.8810 36 1 7.1966 2.1938 -0.3731 37 1 9.2145 3.2284 0.5848 38 1 4.7622 5.0502 1.6523 39 1 2.5823 -3.1054 -0.5082 40 1 0.8891 -2.5565 -0.5016 41 1 0.7143 -5.9678 0.8688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271016387.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:25 Heat of formation + Delta-G solvation = -7.394498 kcal Electronic energy + Delta-G solvation = -25720.957045 eV Core-core repulsion = 21658.632765 eV Total energy + Delta-G solvation = -4062.324280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.53563 -49.62024 -41.87185 -40.47940 -37.30641 -35.50910 -33.77147 -32.51995 -32.10569 -31.25056 -29.82751 -28.29760 -27.59923 -25.14671 -24.59808 -24.26931 -22.29301 -20.99426 -20.56686 -19.03469 -18.75110 -18.25398 -17.97377 -17.38124 -17.36549 -16.95923 -16.37004 -16.04623 -15.84206 -15.66352 -15.54003 -15.37917 -14.96334 -14.72757 -14.54134 -14.22781 -13.90824 -13.76489 -13.62881 -13.47483 -13.34017 -13.05005 -12.96035 -12.72821 -12.64407 -12.54137 -12.50813 -12.19809 -11.94107 -11.84642 -11.12734 -10.82773 -10.71064 -10.10951 -9.72183 -9.30299 -8.57003 -8.22814 -6.47587 -0.19732 -0.03461 1.31582 1.38306 1.40295 1.50890 1.75864 2.26388 2.32220 2.35966 2.71088 2.82643 2.98986 3.28289 3.41017 3.60059 3.96765 3.97639 4.09526 4.22836 4.37580 4.42087 4.56336 4.67445 4.75380 4.78981 4.80767 4.83675 4.94783 4.95397 4.99322 5.01653 5.07921 5.14876 5.24492 5.38023 5.45969 5.56992 5.66879 5.71543 5.86790 6.39219 6.45266 6.69997 6.82915 7.23653 7.41424 8.75455 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.017095 B = 0.002561 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.499399 B =10929.242448 C =11582.487263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.094 3.906 3 C -0.327 4.327 4 C 0.321 3.679 5 N -0.714 5.714 6 C 0.210 3.790 7 H 0.095 0.905 8 C -0.159 4.159 9 C -0.066 4.066 10 C -0.089 4.089 11 C -0.114 4.114 12 C 0.048 3.952 13 F -0.140 7.140 14 C 0.054 3.946 15 F -0.139 7.139 16 C -0.109 4.109 17 N -0.403 5.403 18 N -0.357 5.357 19 C 0.279 3.721 20 C -0.549 4.549 21 H 0.048 0.952 22 C 0.020 3.980 23 N -0.920 5.920 24 Si 0.970 3.030 25 H -0.263 1.263 26 H -0.275 1.275 27 H -0.276 1.276 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.059 0.941 31 H 0.167 0.833 32 H 0.400 0.600 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.155 0.845 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.016 0.984 40 H 0.047 0.953 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 21.516 -2.529 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 C -0.359 4.359 4 C 0.065 3.935 5 N -0.357 5.357 6 C 0.105 3.895 7 H 0.113 0.887 8 C -0.218 4.218 9 C -0.067 4.067 10 C -0.108 4.108 11 C -0.133 4.133 12 C 0.028 3.972 13 F -0.119 7.119 14 C 0.034 3.966 15 F -0.118 7.118 16 C -0.128 4.128 17 N -0.235 5.235 18 N -0.138 5.138 19 C 0.159 3.841 20 C -0.587 4.587 21 H 0.066 0.934 22 C -0.180 4.180 23 N -0.559 5.559 24 Si 0.794 3.206 25 H -0.188 1.188 26 H -0.201 1.201 27 H -0.201 1.201 28 H 0.098 0.902 29 H 0.130 0.870 30 H 0.078 0.922 31 H 0.184 0.816 32 H 0.236 0.764 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.173 0.827 37 H 0.186 0.814 38 H 0.185 0.815 39 H 0.034 0.966 40 H 0.064 0.936 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.270 20.343 -2.533 22.105 hybrid contribution 0.200 0.035 1.100 1.118 sum 8.470 20.378 -1.434 22.114 Atomic orbital electron populations 1.20467 0.86012 1.04047 1.03653 1.21629 0.96216 0.86903 0.98975 1.20815 0.89795 0.99242 1.26054 1.19364 0.89091 0.88910 0.96176 1.43688 1.03579 1.03016 1.85413 1.19666 0.94850 0.77738 0.97250 0.88670 1.22267 1.02670 1.02166 0.94654 1.19875 0.95384 0.95078 0.96341 1.21137 0.90547 0.99895 0.99184 1.21300 1.02055 0.93842 0.96089 1.17999 0.81349 0.97351 1.00504 1.91502 1.51083 1.84336 1.84990 1.17822 0.93689 0.88810 0.96308 1.91510 1.96791 1.53456 1.70009 1.21064 0.98415 0.96497 0.96844 1.77250 0.99246 1.11194 1.35823 1.48599 1.02258 1.07039 1.55896 1.19051 0.94389 0.73333 0.97297 1.21470 1.46900 0.98374 0.92001 0.93358 1.25746 0.94106 0.96006 1.02162 1.70011 1.45281 1.07555 1.33053 0.85371 0.78982 0.77502 0.78723 1.18813 1.20053 1.20146 0.90186 0.87031 0.92195 0.81572 0.76351 0.89658 0.92002 0.92306 0.82749 0.81379 0.81505 0.96628 0.93567 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.53 10.11 71.24 0.72 -1.81 16 2 C 0.09 3.60 6.92 41.39 0.29 3.88 16 3 C -0.33 -10.82 9.83 22.11 0.22 -10.60 16 4 C 0.32 11.56 8.14 133.39 1.09 12.64 16 5 N -0.71 -18.27 5.23 -326.97 -1.71 -19.99 16 6 C 0.21 3.69 2.77 44.25 0.12 3.81 16 7 H 0.10 1.62 7.00 -2.39 -0.02 1.61 16 8 C -0.16 -2.36 9.48 71.98 0.68 -1.68 16 9 C -0.07 -1.02 4.96 -19.86 -0.10 -1.12 16 10 C -0.09 -1.27 9.06 22.27 0.20 -1.06 16 11 C -0.11 -1.64 10.02 22.31 0.22 -1.42 16 12 C 0.05 0.90 7.31 22.41 0.16 1.07 16 13 F -0.14 -3.01 17.18 44.97 0.77 -2.24 16 14 C 0.05 1.02 7.31 22.41 0.16 1.19 16 15 F -0.14 -3.01 17.18 44.97 0.77 -2.23 16 16 C -0.11 -1.68 9.65 22.30 0.22 -1.47 16 17 N -0.40 -18.54 12.59 -54.55 -0.69 -19.22 16 18 N -0.36 -16.90 3.59 -338.46 -1.22 -18.12 16 19 C 0.28 14.87 5.99 85.64 0.51 15.38 16 20 C -0.55 -31.04 9.39 25.60 0.24 -30.80 16 21 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 22 C 0.02 1.12 5.46 84.66 0.46 1.59 16 23 N -0.92 -52.54 13.29 21.45 0.28 -52.25 16 24 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 25 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 28 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.06 1.96 7.06 -2.39 -0.02 1.94 16 31 H 0.17 4.13 7.45 -2.91 -0.02 4.11 16 32 H 0.40 9.64 6.98 -92.71 -0.65 8.99 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.15 1.79 6.90 -2.91 -0.02 1.77 16 37 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 38 H 0.17 1.88 8.04 -2.91 -0.02 1.86 16 39 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.05 2.44 7.03 -2.39 -0.02 2.43 16 41 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 Total: -1.00 -69.00 359.81 5.87 -63.13 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.42 Total: 16.00 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 5.20 Total: -10.42 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -3.33 Total: -109.58 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 1.55 Total: -4.47 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -69.00 5.87 -63.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271016387.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.735 kcal (2) G-P(sol) polarization free energy of solvation -68.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds