Wall clock time and date at job start Tue Mar 31 2020 13:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35252 * 126.06957 * 2 1 4 4 C 1.40431 * 107.86407 * 179.97438 * 3 2 1 5 5 N 1.39985 * 125.97344 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00045 * 0.02562 * 5 4 3 7 7 H 1.09002 * 109.47391 * 34.99655 * 6 5 4 8 8 C 1.53002 * 109.46799 * 274.99751 * 6 5 4 9 9 C 1.50701 * 109.46992 * 154.99664 * 6 5 4 10 10 C 1.38231 * 119.98650 * 25.00004 * 9 6 5 11 11 C 1.38185 * 120.04904 * 179.97438 * 10 9 6 12 12 C 1.38491 * 120.02822 * 359.97438 * 11 10 9 13 13 F 1.35093 * 120.01595 * 179.97438 * 12 11 10 14 14 C 1.38402 * 119.97414 * 0.02562 * 12 11 10 15 15 C 1.38442 * 119.94696 * 359.76032 * 14 12 11 16 16 F 1.35101 * 120.01479 * 180.23164 * 15 14 12 17 17 N 1.31223 * 108.04556 * 0.24430 * 4 3 2 18 18 N 1.34965 * 126.06738 * 179.97438 * 2 1 3 19 19 C 1.46491 * 125.97290 * 359.97438 * 18 2 1 20 20 C 1.50708 * 109.47079 * 90.00634 * 19 18 2 21 21 H 1.07999 * 119.99579 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99821 * 179.97438 * 20 19 18 23 23 N 1.31505 * 120.00308 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99441 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47019 * 90.00234 * 24 22 20 26 26 H 1.48504 * 109.46864 * 210.00178 * 24 22 20 27 27 H 1.48497 * 109.47525 * 329.99931 * 24 22 20 28 28 H 1.09000 * 109.47520 * 90.02531 * 1 2 3 29 29 H 1.09002 * 109.46537 * 210.02149 * 1 2 3 30 30 H 1.08998 * 109.47059 * 330.02047 * 1 2 3 31 31 H 1.07997 * 126.06261 * 0.02562 * 3 2 1 32 32 H 0.96998 * 119.99325 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.46986 * 180.02562 * 8 6 5 34 34 H 1.09002 * 109.47075 * 299.99543 * 8 6 5 35 35 H 1.08996 * 109.47407 * 60.00500 * 8 6 5 36 36 H 1.07998 * 119.97430 * 359.97438 * 10 9 6 37 37 H 1.08001 * 119.98837 * 180.02562 * 11 10 9 38 38 H 1.07999 * 120.02889 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.47576 * 210.00145 * 19 18 2 40 40 H 1.08993 * 109.47458 * 330.00703 * 19 18 2 41 41 H 0.97001 * 120.00351 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6373 0.6545 0.0006 5 7 4.7724 1.4738 0.0003 6 6 4.6238 2.9312 -0.0002 7 1 3.7495 3.2075 0.5892 8 6 4.4471 3.4253 -1.4374 9 6 5.8540 3.5617 0.6001 10 6 7.0605 2.8878 0.5699 11 6 8.1894 3.4650 1.1195 12 6 8.1133 4.7197 1.7008 13 9 9.2169 5.2834 2.2384 14 6 6.9058 5.3953 1.7316 15 6 5.7764 4.8180 1.1768 16 9 4.5981 5.4784 1.2019 17 7 3.6337 -0.6577 -0.0044 18 7 2.3016 -1.0910 0.0005 19 6 1.8499 -2.4845 0.0016 20 6 1.6946 -2.9634 -1.4189 21 1 1.9112 -2.2965 -2.2402 22 6 1.2771 -4.2533 -1.6697 23 7 1.0148 -5.0658 -0.6695 24 14 1.0840 -4.8466 -3.4304 25 1 2.3649 -5.4349 -3.8978 26 1 0.0151 -5.8757 -3.4915 27 1 0.7184 -3.7009 -4.3016 28 1 -0.3634 -0.0005 -1.0276 29 1 -0.3632 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 1.9720 2.1211 0.0004 32 1 5.6573 1.0764 0.0011 33 1 4.3370 4.5097 -1.4378 34 1 5.3214 3.1491 -2.0267 35 1 3.5573 2.9693 -1.8715 36 1 7.1209 1.9095 0.1164 37 1 9.1316 2.9377 1.0950 38 1 6.8453 6.3737 2.1851 39 1 2.5846 -3.1042 0.5156 40 1 0.8914 -2.5554 0.5157 41 1 0.7207 -5.9732 -0.8460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271035535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:31 Heat of formation + Delta-G solvation = -3.425147 kcal Electronic energy + Delta-G solvation = -25917.730417 eV Core-core repulsion = 21855.578260 eV Total energy + Delta-G solvation = -4062.152156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.06343 -50.03219 -41.90934 -40.33791 -37.45147 -35.53925 -33.81575 -32.55305 -31.93724 -31.48499 -29.86717 -28.33147 -27.63815 -25.11639 -24.79795 -24.04929 -22.36258 -21.06987 -20.57017 -19.26882 -18.76412 -18.32139 -17.49814 -17.38672 -17.03713 -16.82035 -16.38964 -16.34682 -16.04384 -15.95862 -15.59483 -15.42609 -14.94360 -14.67516 -14.51853 -14.28930 -13.92979 -13.66404 -13.61941 -13.54278 -13.30794 -13.09081 -12.93714 -12.80190 -12.67557 -12.64228 -12.38978 -12.20055 -12.07631 -11.87813 -11.17408 -10.88758 -10.72070 -10.13063 -9.68814 -9.34263 -8.61190 -8.24482 -6.47953 -0.15725 -0.04677 1.28231 1.38310 1.39885 1.50628 1.70789 2.23409 2.29067 2.34669 2.71112 2.79872 2.98841 3.30341 3.43720 3.54213 3.86266 3.94845 4.07007 4.21879 4.31086 4.36715 4.52101 4.64847 4.72295 4.75552 4.76846 4.83007 4.89617 4.90827 4.94513 5.00139 5.03448 5.10188 5.15355 5.29353 5.36562 5.56094 5.63806 5.69893 5.85873 6.35347 6.39911 6.68015 6.77920 7.23169 7.36060 8.75418 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.002532 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.138391 B =11054.507455 C =11565.868966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.096 3.904 3 C -0.330 4.330 4 C 0.321 3.679 5 N -0.713 5.713 6 C 0.213 3.787 7 H 0.087 0.913 8 C -0.158 4.158 9 C -0.133 4.133 10 C -0.058 4.058 11 C -0.150 4.150 12 C 0.119 3.881 13 F -0.135 7.135 14 C -0.185 4.185 15 C 0.130 3.870 16 F -0.131 7.131 17 N -0.399 5.399 18 N -0.355 5.355 19 C 0.278 3.722 20 C -0.549 4.549 21 H 0.049 0.951 22 C 0.020 3.980 23 N -0.921 5.921 24 Si 0.971 3.029 25 H -0.276 1.276 26 H -0.271 1.271 27 H -0.268 1.268 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.161 0.839 32 H 0.401 0.599 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.152 0.848 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.016 0.984 40 H 0.047 0.953 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.485 22.088 2.909 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.035 4.035 3 C -0.362 4.362 4 C 0.064 3.936 5 N -0.357 5.357 6 C 0.107 3.893 7 H 0.105 0.895 8 C -0.217 4.217 9 C -0.135 4.135 10 C -0.077 4.077 11 C -0.168 4.168 12 C 0.099 3.901 13 F -0.114 7.114 14 C -0.205 4.205 15 C 0.111 3.889 16 F -0.109 7.109 17 N -0.231 5.231 18 N -0.136 5.136 19 C 0.159 3.841 20 C -0.587 4.587 21 H 0.067 0.933 22 C -0.180 4.180 23 N -0.559 5.559 24 Si 0.795 3.205 25 H -0.201 1.201 26 H -0.196 1.196 27 H -0.192 1.192 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.179 0.821 32 H 0.239 0.761 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.170 0.830 37 H 0.183 0.817 38 H 0.183 0.817 39 H 0.035 0.965 40 H 0.065 0.935 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.962 20.895 2.990 23.341 hybrid contribution -0.168 -0.043 -0.531 0.559 sum 9.794 20.852 2.459 23.169 Atomic orbital electron populations 1.20470 0.85889 1.04057 1.03741 1.21605 0.96253 0.86809 0.98807 1.20796 0.90016 0.99142 1.26277 1.19339 0.88973 0.88984 0.96310 1.43658 1.03720 1.02820 1.85517 1.19443 0.94868 0.78142 0.96807 0.89508 1.22233 1.02684 1.01755 0.94984 1.20055 0.96952 0.94333 1.02113 1.20804 0.90054 1.00035 0.96787 1.21424 1.01315 0.94221 0.99873 1.17413 0.82555 0.92793 0.97313 1.91531 1.51186 1.84927 1.83728 1.21147 0.90673 1.03547 1.05092 1.17031 0.81522 0.90679 0.99718 1.91530 1.44791 1.80150 1.94460 1.77241 0.99276 1.10872 1.35707 1.48624 1.02187 1.07064 1.55745 1.19081 0.94422 0.73173 0.97445 1.21465 1.47053 0.98280 0.91924 0.93272 1.25755 0.94079 0.96014 1.02198 1.70006 1.45399 1.07506 1.33010 0.85362 0.78190 0.78230 0.78743 1.20140 1.19556 1.19226 0.90022 0.91994 0.87222 0.82139 0.76078 0.90302 0.91835 0.92414 0.83043 0.81735 0.81702 0.96546 0.93534 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.63 10.11 71.24 0.72 -1.91 16 2 C 0.10 3.85 6.92 41.39 0.29 4.14 16 3 C -0.33 -11.75 9.83 22.12 0.22 -11.54 16 4 C 0.32 12.19 8.14 133.39 1.09 13.27 16 5 N -0.71 -20.04 5.20 -326.96 -1.70 -21.74 16 6 C 0.21 4.65 2.55 44.25 0.11 4.76 16 7 H 0.09 2.00 6.80 -2.39 -0.02 1.99 16 8 C -0.16 -3.14 9.48 71.98 0.68 -2.46 16 9 C -0.13 -2.44 5.06 -19.81 -0.10 -2.54 16 10 C -0.06 -0.92 9.23 22.26 0.21 -0.72 16 11 C -0.15 -2.07 10.02 22.32 0.22 -1.84 16 12 C 0.12 1.83 7.30 22.37 0.16 1.99 16 13 F -0.14 -2.23 17.27 44.97 0.78 -1.45 16 14 C -0.19 -2.80 10.01 22.36 0.22 -2.58 16 15 C 0.13 2.30 7.24 22.37 0.16 2.46 16 16 F -0.13 -2.47 16.57 44.97 0.75 -1.73 16 17 N -0.40 -18.79 12.59 -54.55 -0.69 -19.47 16 18 N -0.36 -17.18 3.59 -338.46 -1.22 -18.39 16 19 C 0.28 14.98 5.99 85.64 0.51 15.50 16 20 C -0.55 -31.15 9.39 25.60 0.24 -30.91 16 21 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 22 C 0.02 1.11 5.46 84.66 0.46 1.57 16 23 N -0.92 -52.76 13.29 21.45 0.28 -52.48 16 24 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.06 2.08 7.07 -2.39 -0.02 2.06 16 30 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.16 4.58 7.45 -2.91 -0.02 4.56 16 32 H 0.40 10.28 6.33 -92.71 -0.59 9.69 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.15 2.13 6.07 -2.91 -0.02 2.11 16 37 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 38 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.05 2.49 7.04 -2.39 -0.02 2.47 16 41 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -67.11 357.96 5.92 -61.19 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.49 Total: 19.49 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 5.20 Total: -10.81 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -3.32 Total: -112.08 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 1.52 Total: -3.18 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -67.11 5.92 -61.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271035535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.766 kcal (2) G-P(sol) polarization free energy of solvation -67.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds