Wall clock time and date at job start Tue Mar 31 2020 12:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86799 * 119.99935 * 2 1 4 4 H 1.48500 * 109.47057 * 274.66135 * 3 2 1 5 5 H 1.48499 * 109.47397 * 34.65891 * 3 2 1 6 6 H 1.48501 * 109.47488 * 154.66324 * 3 2 1 7 7 C 1.39950 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00112 * 162.23229 * 7 2 1 9 9 C 1.41398 * 119.99773 * 342.23649 * 7 2 1 10 10 C 1.40711 * 120.24226 * 155.28377 * 9 7 2 11 11 C 1.37616 * 119.74335 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24781 * 0.02671 * 11 10 9 13 13 C 1.50706 * 119.74731 * 179.97438 * 12 11 10 14 14 N 1.46499 * 109.47181 * 89.99779 * 13 12 11 15 15 C 1.39752 * 120.00294 * 179.97438 * 14 13 12 16 16 C 1.38916 * 120.01513 * 180.02562 * 15 14 13 17 17 C 1.38020 * 119.99352 * 180.22995 * 16 15 14 18 18 C 1.38841 * 120.01136 * 359.47593 * 17 16 15 19 19 N 1.40352 * 119.99526 * 180.27465 * 18 17 16 20 20 C 1.35040 * 127.38485 * 359.97438 * 19 18 17 21 21 N 1.30758 * 107.27583 * 179.84117 * 20 19 18 22 22 N 1.28424 * 110.63945 * 0.44353 * 21 20 19 23 23 N 1.28947 * 110.20010 * 359.72064 * 22 21 20 24 24 C 1.38841 * 120.01593 * 0.54661 * 18 17 16 25 25 C 1.38031 * 120.01163 * 359.70207 * 24 18 17 26 26 C 1.38632 * 120.50301 * 0.24784 * 12 11 10 27 27 C 1.37627 * 120.24612 * 359.45131 * 26 12 11 28 28 H 0.97000 * 119.99900 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.13068 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.87818 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.47201 * 330.00165 * 13 12 11 32 32 H 1.08994 * 109.46743 * 209.99790 * 13 12 11 33 33 H 0.97008 * 120.00159 * 0.02562 * 14 13 12 34 34 H 1.08008 * 120.00341 * 359.95924 * 16 15 14 35 35 H 1.08008 * 119.99959 * 179.72630 * 17 16 15 36 36 H 1.07992 * 126.35664 * 359.97438 * 20 19 18 37 37 H 1.07996 * 119.99657 * 179.72940 * 24 18 17 38 38 H 1.07996 * 120.00372 * 180.02562 * 25 24 18 39 39 H 1.07995 * 119.87901 * 179.70475 * 26 12 11 40 40 H 1.08000 * 120.12720 * 180.27202 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4924 2.6223 0.7962 6 1 3.5856 1.4138 0.5991 7 6 2.0080 -1.2120 0.0005 8 1 3.0494 -1.2344 -0.2849 9 6 1.3516 -2.4072 0.3747 10 6 1.8218 -3.6493 -0.0900 11 6 1.1748 -4.8061 0.2801 12 6 0.0634 -4.7507 1.1071 13 6 -0.6369 -6.0245 1.5049 14 7 -0.0450 -6.5416 2.7412 15 6 -0.5323 -7.7219 3.3090 16 6 0.0284 -8.2122 4.4816 17 6 -0.4501 -9.3804 5.0393 18 6 -1.4991 -10.0599 4.4346 19 7 -1.9892 -11.2449 5.0052 20 6 -1.5556 -11.8539 6.1298 21 7 -2.2883 -12.9235 6.2994 22 7 -3.1495 -13.0369 5.3535 23 7 -3.0330 -12.0555 4.5252 24 6 -2.0595 -9.5706 3.2623 25 6 -1.5782 -8.4051 2.7010 26 6 -0.4120 -3.5321 1.5662 27 6 0.2229 -2.3630 1.2139 28 1 -0.4850 0.8401 -0.0004 29 1 2.6871 -3.6947 -0.7346 30 1 1.5341 -5.7607 -0.0749 31 1 -0.5249 -6.7637 0.7117 32 1 -1.6956 -5.8219 1.6660 33 1 0.6848 -6.0643 3.1662 34 1 0.8417 -7.6815 4.9544 35 1 -0.0113 -9.7640 5.9486 36 1 -0.7541 -11.5184 6.7711 37 1 -2.8725 -10.1018 2.7898 38 1 -2.0145 -8.0244 1.7894 39 1 -1.2814 -3.5003 2.2061 40 1 -0.1465 -1.4150 1.5763 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342462012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:47 Heat of formation + Delta-G solvation = 150.870899 kcal Electronic energy + Delta-G solvation = -24037.870035 eV Core-core repulsion = 20433.097844 eV Total energy + Delta-G solvation = -3604.772191 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.128 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -44.14979 -40.67393 -39.54896 -37.39994 -35.82950 -34.75437 -33.35763 -32.32753 -31.95705 -31.18852 -29.83601 -28.04049 -25.84385 -25.25572 -24.56947 -22.93407 -22.80983 -22.44715 -21.54407 -19.55154 -19.25174 -18.31073 -17.58048 -17.27693 -17.07469 -16.88106 -15.92005 -15.79319 -15.59341 -15.29988 -14.86689 -14.71935 -14.45438 -14.24676 -14.21629 -13.96764 -13.93192 -13.82455 -13.37374 -13.21116 -12.91322 -12.76354 -12.58894 -12.37006 -12.13721 -12.06113 -11.97232 -11.53957 -11.47459 -11.30485 -11.04350 -10.69825 -10.06345 -9.40455 -9.29558 -8.68745 -8.28647 -6.38406 -0.48168 0.36075 0.79128 0.84515 0.91052 1.12889 1.28622 1.37434 1.45018 1.52186 2.18104 2.48473 2.79066 2.84474 3.18716 3.45178 3.72837 3.88817 3.89487 3.98746 4.16241 4.27075 4.33611 4.35376 4.50414 4.51474 4.66691 4.68063 4.74743 4.94871 5.01263 5.04143 5.13439 5.28252 5.33840 5.35608 5.42692 5.49439 5.67614 5.78898 5.92328 6.07680 6.19324 6.32578 6.36821 6.67464 6.81845 6.90808 6.99925 7.37659 8.27890 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.046122 B = 0.001821 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.945634 B =15376.087483 C =15449.154269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.036 3.964 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.499 4.499 8 H 0.075 0.925 9 C 0.084 3.916 10 C -0.246 4.246 11 C -0.069 4.069 12 C -0.225 4.225 13 C 0.192 3.808 14 N -0.725 5.725 15 C 0.230 3.770 16 C -0.180 4.180 17 C -0.048 4.048 18 C 0.027 3.973 19 N -0.304 5.304 20 C 0.228 3.772 21 N -0.361 5.361 22 N -0.072 5.072 23 N -0.114 5.114 24 C -0.053 4.053 25 C -0.194 4.194 26 C -0.083 4.083 27 C -0.194 4.194 28 H 0.289 0.711 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.406 0.594 34 H 0.156 0.844 35 H 0.173 0.827 36 H 0.290 0.710 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.881 -12.530 10.131 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.528 4.528 8 H 0.093 0.907 9 C 0.082 3.918 10 C -0.265 4.265 11 C -0.087 4.087 12 C -0.227 4.227 13 C 0.069 3.931 14 N -0.350 5.350 15 C 0.122 3.878 16 C -0.203 4.203 17 C -0.069 4.069 18 C -0.067 4.067 19 N -0.093 5.093 20 C -0.067 4.067 21 N -0.213 5.213 22 N -0.067 5.067 23 N -0.100 5.100 24 C -0.074 4.074 25 C -0.218 4.218 26 C -0.101 4.101 27 C -0.214 4.214 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.135 0.865 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.241 0.759 34 H 0.174 0.826 35 H 0.190 0.810 36 H 0.305 0.695 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.124 0.876 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.479 -13.249 9.578 16.356 hybrid contribution 0.950 1.912 -0.291 2.155 sum 0.470 -11.337 9.288 14.663 Atomic orbital electron populations 1.69861 1.08978 1.30658 1.35180 1.26741 0.95470 1.04510 0.91199 0.85235 0.79277 0.76127 0.79382 1.18826 1.19052 1.18217 1.19892 0.98390 0.92652 1.41843 0.90664 1.18008 0.91781 0.93099 0.88950 1.21169 1.04603 0.93244 1.07530 1.20713 0.94719 0.96787 0.96513 1.19248 1.01473 0.93528 1.08408 1.19893 0.95645 0.91825 0.85697 1.45306 1.39140 1.23754 1.26846 1.18331 0.91565 0.86064 0.91858 1.20727 1.04568 0.98434 0.96582 1.20872 0.92567 0.93486 0.99992 1.17503 1.02589 0.87452 0.99126 1.49036 1.23338 1.18549 1.18360 1.28298 1.00277 0.89196 0.88947 1.74364 1.06843 1.19543 1.20524 1.78024 1.15402 1.14629 0.98648 1.82573 1.06142 1.00812 1.20493 1.20682 0.98499 0.95131 0.93079 1.20640 1.00384 0.97289 1.03477 1.20782 0.98244 0.92459 0.98659 1.21275 1.00335 0.97247 1.02532 0.90049 0.88692 0.86478 0.91485 0.92011 0.75860 0.82624 0.80980 0.69500 0.85168 0.84634 0.87639 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.23 10.97 21.83 0.24 -40.99 16 2 C 0.04 1.76 5.14 85.26 0.44 2.19 16 3 Si 0.98 36.47 29.59 68.60 2.03 38.50 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 6 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 7 C -0.50 -25.71 9.05 23.46 0.21 -25.49 16 8 H 0.08 3.75 7.91 -2.91 -0.02 3.73 16 9 C 0.08 4.27 5.57 -21.29 -0.12 4.15 16 10 C -0.25 -11.09 9.80 22.73 0.22 -10.86 16 11 C -0.07 -2.60 9.67 22.22 0.21 -2.38 16 12 C -0.22 -7.91 5.27 -19.67 -0.10 -8.02 16 13 C 0.19 5.00 5.03 85.64 0.43 5.43 16 14 N -0.73 -15.84 5.73 -343.04 -1.96 -17.80 16 15 C 0.23 4.35 6.65 38.21 0.25 4.60 16 16 C -0.18 -2.48 9.89 22.38 0.22 -2.26 16 17 C -0.05 -0.54 9.48 22.36 0.21 -0.33 16 18 C 0.03 0.46 6.71 38.06 0.26 0.72 16 19 N -0.30 -5.80 3.86 -190.97 -0.74 -6.53 16 20 C 0.23 3.22 12.16 180.19 2.19 5.41 16 21 N -0.36 -8.11 12.16 -60.14 -0.73 -8.84 16 22 N -0.07 -1.97 13.39 37.02 0.50 -1.47 16 23 N -0.11 -2.96 13.33 37.02 0.49 -2.46 16 24 C -0.05 -1.03 9.69 22.37 0.22 -0.81 16 25 C -0.19 -3.78 9.30 22.39 0.21 -3.57 16 26 C -0.08 -3.36 9.67 22.22 0.21 -3.14 16 27 C -0.19 -9.48 8.70 22.73 0.20 -9.28 16 28 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 29 H 0.09 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 31 H 0.07 1.62 7.89 -2.39 -0.02 1.60 16 32 H 0.06 1.56 7.88 -2.39 -0.02 1.54 16 33 H 0.41 8.80 8.48 -92.70 -0.79 8.02 16 34 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 35 H 0.17 0.43 6.88 -2.91 -0.02 0.41 16 36 H 0.29 0.19 7.18 -2.91 -0.02 0.17 16 37 H 0.13 2.61 7.76 -2.91 -0.02 2.59 16 38 H 0.14 2.56 6.72 -2.91 -0.02 2.54 16 39 H 0.11 3.84 8.06 -2.91 -0.02 3.81 16 40 H 0.10 5.08 6.18 -2.91 -0.02 5.07 16 Total: -1.00 -63.85 349.51 5.40 -58.45 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.31 Total: 24.81 kcal Atomic # 6 Polarization: -48.92 SS G_CDS: 5.27 Total: -43.65 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -2.20 Total: -78.10 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.50 kcal Total: -63.85 5.40 -58.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342462012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.316 kcal (2) G-P(sol) polarization free energy of solvation -63.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds