Wall clock time and date at job start Tue Mar 31 2020 13:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39746 * 119.91782 * 2 1 4 4 C 1.36128 * 119.17293 * 180.27555 * 3 2 1 5 5 C 1.50698 * 120.42407 * 179.97438 * 4 3 2 6 6 N 1.34995 * 119.15720 * 359.97438 * 4 3 2 7 7 C 1.36734 * 120.39844 * 0.02562 * 6 4 3 8 8 N 1.33410 * 107.85910 * 179.97438 * 7 6 4 9 9 C 1.33179 * 109.86881 * 359.97438 * 8 7 6 10 10 S 1.71197 * 125.55332 * 179.97438 * 9 8 7 11 11 N 1.34906 * 108.89360 * 0.02562 * 9 8 7 12 12 C 1.46496 * 126.67290 * 180.02562 * 11 9 8 13 13 N 1.46899 * 109.47312 * 98.74336 * 12 11 9 14 14 C 1.46897 * 110.99988 * 288.11691 * 13 12 11 15 15 C 1.46897 * 111.00350 * 164.16131 * 13 12 11 16 16 H 1.09000 * 109.47149 * 310.00423 * 15 13 12 17 17 C 1.53006 * 109.47209 * 69.99653 * 15 13 12 18 18 C 1.50694 * 109.47509 * 189.99806 * 15 13 12 19 19 H 1.08002 * 120.00065 * 0.02562 * 18 15 13 20 20 C 1.37877 * 120.00027 * 179.97438 * 18 15 13 21 21 N 1.31522 * 119.99693 * 179.97438 * 20 18 15 22 22 Si 1.86802 * 120.00256 * 0.02562 * 20 18 15 23 23 H 1.48503 * 109.46810 * 89.99554 * 22 20 18 24 24 H 1.48497 * 109.47156 * 209.99599 * 22 20 18 25 25 H 1.48501 * 109.47007 * 329.99637 * 22 20 18 26 26 N 1.31715 * 119.91187 * 180.26607 * 2 1 3 27 27 H 1.08994 * 109.47533 * 269.73062 * 1 2 3 28 28 H 1.09007 * 109.47068 * 29.73070 * 1 2 3 29 29 H 1.09004 * 109.47549 * 149.72614 * 1 2 3 30 30 H 1.08001 * 120.41018 * 0.24461 * 3 2 1 31 31 H 1.09003 * 109.47138 * 263.41769 * 5 4 3 32 32 H 1.09000 * 109.47193 * 23.41661 * 5 4 3 33 33 H 1.08998 * 109.47167 * 143.41901 * 5 4 3 34 34 H 1.08999 * 109.46944 * 218.74277 * 12 11 9 35 35 H 1.08995 * 109.47276 * 338.73928 * 12 11 9 36 36 H 1.08996 * 109.47694 * 67.71898 * 14 13 12 37 37 H 1.09002 * 109.47191 * 187.72338 * 14 13 12 38 38 H 1.09005 * 109.47027 * 307.71727 * 14 13 12 39 39 H 1.08996 * 109.46990 * 180.02562 * 17 15 13 40 40 H 1.09004 * 109.47059 * 300.00501 * 17 15 13 41 41 H 1.09000 * 109.46437 * 60.00333 * 17 15 13 42 42 H 0.97003 * 119.99220 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2039 1.2112 0.0000 4 6 3.5651 1.1935 -0.0057 5 6 4.3450 2.4830 -0.0065 6 7 4.2074 0.0062 -0.0107 7 6 3.4993 -1.1635 -0.0106 8 7 4.3737 -2.1711 -0.0166 9 6 5.6163 -1.6920 -0.0212 10 16 7.0461 -2.6335 -0.0290 11 7 5.5648 -0.3439 -0.0176 12 6 6.7055 0.5753 -0.0211 13 7 6.9477 1.0499 -1.3900 14 6 7.5145 -0.0177 -2.2248 15 6 7.8154 2.2352 -1.3905 16 1 7.4292 2.9685 -0.6826 17 6 9.2331 1.8297 -0.9821 18 6 7.8433 2.8368 -2.7719 19 1 7.2731 2.3841 -3.5697 20 6 8.5959 3.9657 -3.0171 21 7 8.6207 4.4904 -4.2229 22 14 9.5816 4.7491 -1.6371 23 1 10.9412 4.1530 -1.5998 24 1 9.6885 6.2113 -1.8735 25 1 8.8986 4.5058 -0.3412 26 7 2.1637 -1.1417 -0.0053 27 1 -0.3634 -0.0048 1.0276 28 1 -0.3633 0.8924 -0.5097 29 1 -0.3634 -0.8875 -0.5181 30 1 1.6693 2.1496 0.0040 31 1 4.6296 2.7349 -1.0281 32 1 3.7279 3.2812 0.4061 33 1 5.2417 2.3656 0.6020 34 1 6.4887 1.4257 0.6253 35 1 7.5912 0.0566 0.3457 36 1 6.7667 -0.7962 -2.3764 37 1 7.8110 0.3941 -3.1895 38 1 8.3864 -0.4433 -1.7279 39 1 9.8767 2.7093 -0.9821 40 1 9.2129 1.3945 0.0171 41 1 9.6193 1.0964 -1.6901 42 1 9.1499 5.2849 -4.3952 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728902564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:51 Heat of formation + Delta-G solvation = 158.475896 kcal Electronic energy + Delta-G solvation = -25837.004777 eV Core-core repulsion = 22368.006315 eV Total energy + Delta-G solvation = -3468.998462 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.69281 -40.70097 -39.43201 -37.07139 -35.32574 -34.18519 -33.46778 -31.79663 -30.84757 -29.09161 -28.34910 -27.28848 -26.11401 -25.41066 -24.27721 -22.96835 -21.55616 -20.04467 -19.70943 -18.81227 -18.66347 -17.93525 -17.80286 -16.98510 -16.45751 -16.24903 -15.68602 -15.40396 -15.27471 -14.97138 -14.83608 -14.66437 -14.18859 -14.12839 -13.78720 -13.57505 -13.28694 -13.22641 -13.13820 -13.08334 -12.87530 -12.81711 -12.61353 -12.43803 -12.23833 -11.98697 -11.49677 -11.34387 -11.29904 -11.18483 -10.79205 -10.48455 -9.58977 -8.95044 -8.83125 -8.28553 -6.33915 -1.13362 -0.85746 -0.82105 0.72349 0.84885 1.35269 1.35999 1.47801 1.72377 1.95449 1.99172 2.31246 2.62516 2.88855 2.94523 3.07120 3.20854 3.45133 3.76848 3.83562 4.07044 4.13441 4.20923 4.27673 4.39546 4.45502 4.46312 4.51714 4.59538 4.66331 4.75055 4.79218 4.84736 4.85005 5.01057 5.03723 5.11944 5.27922 5.30260 5.47689 5.77280 5.84618 5.97856 6.28213 6.45108 6.72367 7.30408 8.87730 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.014165 B = 0.004712 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.217668 B = 5940.986217 C = 7314.019708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.259 3.741 3 C -0.191 4.191 4 C 0.196 3.804 5 C -0.138 4.138 6 N -0.305 5.305 7 C 0.514 3.486 8 N -0.549 5.549 9 C 0.497 3.503 10 S -0.643 6.643 11 N -0.362 5.362 12 C 0.273 3.727 13 N -0.536 5.536 14 C 0.052 3.948 15 C 0.197 3.803 16 H 0.066 0.934 17 C -0.190 4.190 18 C -0.501 4.501 19 H 0.036 0.964 20 C 0.020 3.980 21 N -0.946 5.946 22 Si 0.944 3.056 23 H -0.279 1.279 24 H -0.300 1.300 25 H -0.230 1.230 26 N -0.492 5.492 27 H 0.125 0.875 28 H 0.134 0.866 29 H 0.087 0.913 30 H 0.242 0.758 31 H 0.100 0.900 32 H 0.155 0.845 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.032 0.968 37 H 0.060 0.940 38 H 0.038 0.962 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.210 4.070 14.030 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 C -0.216 4.216 4 C 0.078 3.922 5 C -0.194 4.194 6 N -0.082 5.082 7 C 0.155 3.845 8 N -0.287 5.287 9 C 0.131 3.869 10 S -0.513 6.513 11 N -0.163 5.163 12 C 0.063 3.937 13 N -0.261 5.261 14 C -0.096 4.096 15 C 0.090 3.910 16 H 0.084 0.916 17 C -0.249 4.249 18 C -0.540 4.540 19 H 0.054 0.946 20 C -0.178 4.178 21 N -0.586 5.586 22 Si 0.771 3.229 23 H -0.206 1.206 24 H -0.228 1.228 25 H -0.153 1.153 26 N -0.213 5.213 27 H 0.143 0.857 28 H 0.152 0.848 29 H 0.105 0.895 30 H 0.259 0.741 31 H 0.119 0.881 32 H 0.173 0.827 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.123 0.877 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.827 2.307 13.712 24.216 hybrid contribution 1.878 1.398 -0.092 2.343 sum -17.949 3.705 13.620 22.834 Atomic orbital electron populations 1.21277 0.81708 1.07069 1.06686 1.23263 1.00585 0.85922 0.79951 1.22486 0.88733 1.03577 1.06769 1.22039 0.93976 0.85653 0.90544 1.21630 1.00952 0.90749 1.06112 1.46666 0.99673 1.10377 1.51504 1.23019 0.90283 0.80107 0.91079 1.72172 0.97090 1.25540 1.33911 1.23901 0.96692 0.81166 0.85156 1.92984 1.19193 1.62246 1.76829 1.49988 0.93627 1.07022 1.65616 1.23031 0.84165 0.92600 0.93921 1.61967 1.49216 1.07210 1.07689 1.22101 0.97383 0.92145 0.97975 1.19640 0.87231 0.87075 0.97037 0.91637 1.22837 1.00343 1.01105 1.00599 1.20913 1.28049 1.10417 0.94604 0.94593 1.25691 0.97322 0.97212 0.97577 1.70030 1.42530 1.23102 1.22889 0.85943 0.79523 0.76200 0.81204 1.20638 1.22824 1.15306 1.68352 0.98539 1.31029 1.23363 0.85727 0.84811 0.89457 0.74138 0.88127 0.82709 0.90276 0.84165 0.87726 0.94900 0.92139 0.94305 0.93612 0.91934 0.93201 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.05 10.19 71.23 0.73 0.68 16 2 C 0.26 2.72 6.83 42.94 0.29 3.01 16 3 C -0.19 -1.24 9.37 22.14 0.21 -1.03 16 4 C 0.20 3.01 6.83 41.58 0.28 3.29 16 5 C -0.14 -1.68 9.38 71.24 0.67 -1.01 16 6 N -0.30 -7.98 3.84 -186.00 -0.71 -8.69 16 7 C 0.51 15.66 8.96 261.41 2.34 18.00 16 8 N -0.55 -21.69 11.29 -201.46 -2.27 -23.97 16 9 C 0.50 19.93 7.39 179.51 1.33 21.26 16 10 S -0.64 -29.55 29.90 -56.49 -1.69 -31.23 16 11 N -0.36 -11.76 3.61 -360.93 -1.30 -13.06 16 12 C 0.27 8.22 4.44 170.81 0.76 8.98 16 13 N -0.54 -19.32 4.82 -913.87 -4.40 -23.72 16 14 C 0.05 2.15 8.02 127.69 1.02 3.18 16 15 C 0.20 7.63 1.89 44.17 0.08 7.72 16 16 H 0.07 2.26 6.92 -2.39 -0.02 2.24 16 17 C -0.19 -7.11 7.96 71.98 0.57 -6.54 16 18 C -0.50 -25.17 8.38 25.60 0.21 -24.95 16 19 H 0.04 2.11 7.44 -2.91 -0.02 2.08 16 20 C 0.02 1.04 5.45 84.65 0.46 1.51 16 21 N -0.95 -54.83 13.96 21.45 0.30 -54.53 16 22 Si 0.94 39.33 24.37 68.60 1.67 41.00 16 23 H -0.28 -11.72 6.87 99.48 0.68 -11.04 16 24 H -0.30 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.23 -8.04 6.53 99.48 0.65 -7.39 16 26 N -0.49 -11.26 10.41 -185.42 -1.93 -13.18 16 27 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.13 -0.85 8.09 -2.38 -0.02 -0.86 16 29 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.24 -1.33 8.06 -2.91 -0.02 -1.35 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.15 0.31 8.05 -2.39 -0.02 0.29 16 33 H 0.08 1.11 5.12 -2.39 -0.01 1.10 16 34 H 0.14 3.16 5.06 -2.39 -0.01 3.15 16 35 H 0.11 3.42 6.43 -2.39 -0.02 3.41 16 36 H 0.03 1.42 7.48 -2.39 -0.02 1.40 16 37 H 0.06 2.77 6.62 -2.39 -0.02 2.75 16 38 H 0.04 1.60 6.77 -2.38 -0.02 1.58 16 39 H 0.05 1.76 3.27 -2.39 -0.01 1.75 16 40 H 0.06 1.94 7.06 -2.39 -0.02 1.93 16 41 H 0.05 2.01 6.59 -2.39 -0.02 1.99 16 42 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -86.41 343.49 -0.40 -86.81 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 0.98 Total: 6.49 kcal Atomic # 6 Polarization: 25.12 SS G_CDS: 8.96 Total: 34.09 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -10.33 Total: -137.15 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.67 Total: 41.00 kcal Atomic # 16 Polarization: -29.55 SS G_CDS: -1.69 Total: -31.23 kcal Total: -86.41 -0.40 -86.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728902564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.286 kcal (2) G-P(sol) polarization free energy of solvation -86.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds