Wall clock time and date at job start Tue Mar 31 2020 13:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00190 * 2 1 4 4 C 1.53001 * 109.47451 * 305.62929 * 3 2 1 5 5 C 1.50704 * 109.47312 * 185.62977 * 3 2 1 6 6 O 1.20824 * 119.99937 * 215.00185 * 5 3 2 7 7 O 1.34232 * 119.99672 * 35.00073 * 5 3 2 8 8 C 1.45202 * 116.99930 * 179.97438 * 7 5 3 9 9 C 1.50700 * 109.47121 * 180.02562 * 8 7 5 10 10 O 1.21281 * 119.99863 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00090 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00150 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47293 * 179.97438 * 12 11 9 14 14 H 1.08008 * 119.99618 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00359 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99756 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00230 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46914 * 60.00300 * 17 15 13 19 19 H 1.48499 * 109.47038 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46988 * 300.00181 * 17 15 13 21 21 C 1.50699 * 109.47155 * 65.63233 * 3 2 1 22 22 C 1.38237 * 120.00155 * 200.92751 * 21 3 2 23 23 C 1.38241 * 120.00200 * 179.78901 * 22 21 3 24 24 C 1.38235 * 119.99599 * 0.43349 * 23 22 21 25 25 C 1.38231 * 120.00355 * 359.81770 * 24 23 22 26 26 C 1.38236 * 119.99950 * 21.19485 * 21 3 2 27 27 H 1.08995 * 109.47218 * 66.02469 * 1 2 3 28 28 H 1.09001 * 109.47180 * 186.03814 * 1 2 3 29 29 H 1.09004 * 109.46276 * 306.03234 * 1 2 3 30 30 H 1.08997 * 109.47108 * 300.00287 * 4 3 2 31 31 H 1.09006 * 109.46767 * 60.00257 * 4 3 2 32 32 H 1.08999 * 109.47198 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.46907 * 59.99997 * 8 7 5 34 34 H 1.08998 * 109.47143 * 300.00433 * 8 7 5 35 35 H 0.96999 * 119.99712 * 359.97438 * 11 9 8 36 36 H 1.08998 * 109.47438 * 299.99948 * 12 11 9 37 37 H 1.09001 * 109.47200 * 59.99872 * 12 11 9 38 38 H 0.96996 * 120.00202 * 179.97438 * 16 15 13 39 39 H 1.08001 * 119.99982 * 359.97438 * 22 21 3 40 40 H 1.07998 * 120.00228 * 180.27047 * 23 22 21 41 41 H 1.07999 * 119.99989 * 179.83357 * 24 23 22 42 42 H 1.07999 * 120.00718 * 180.02562 * 25 24 23 43 43 H 1.07992 * 120.00199 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4501 2.1132 -1.1725 5 6 3.5064 1.1892 -0.1394 6 8 4.2288 1.9725 0.4301 7 8 4.0362 0.2154 -0.8962 8 6 5.4846 0.1641 -0.9854 9 6 5.8930 -0.9845 -1.8713 10 8 5.0467 -1.6907 -2.3773 11 7 7.1986 -1.2276 -2.1005 12 6 7.5957 -2.3446 -2.9613 13 6 9.0989 -2.3977 -3.0540 14 1 9.6986 -1.6722 -2.5242 15 6 9.7087 -3.3730 -3.8141 16 7 8.9786 -4.2573 -4.4579 17 14 11.5721 -3.4384 -3.9295 18 1 12.1456 -3.6298 -2.5731 19 1 11.9745 -4.5707 -4.8020 20 1 12.0772 -2.1663 -4.5057 21 6 1.6791 2.0027 1.2942 22 6 1.7407 3.3816 1.3719 23 6 1.4326 4.0215 2.5579 24 6 1.0717 3.2821 3.6687 25 6 1.0152 1.9030 3.5925 26 6 1.3191 1.2633 2.4053 27 1 -0.3633 0.4176 -0.9390 28 1 -0.3633 -1.0220 0.1081 29 1 -0.3632 0.6046 0.8311 30 1 1.6897 1.6088 -2.1085 31 1 0.3680 2.1973 -1.0716 32 1 1.8932 3.1091 -1.1721 33 1 5.9051 0.0229 0.0103 34 1 5.8559 1.0980 -1.4075 35 1 7.8755 -0.6630 -1.6955 36 1 7.2241 -3.2784 -2.5394 37 1 7.1754 -2.2032 -3.9570 38 1 9.4075 -4.9433 -4.9930 39 1 2.0265 3.9590 0.5052 40 1 1.4765 5.0990 2.6174 41 1 0.8337 3.7819 4.5960 42 1 0.7328 1.3253 4.4602 43 1 1.2747 0.1859 2.3458 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730354369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:21 Heat of formation + Delta-G solvation = -131.667019 kcal Electronic energy + Delta-G solvation = -26603.937530 eV Core-core repulsion = 22615.019154 eV Total energy + Delta-G solvation = -3988.918377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26397 -39.74629 -38.61813 -37.95107 -36.40217 -34.21831 -33.08553 -32.38923 -31.20486 -29.95212 -29.10168 -27.70460 -26.62307 -24.57560 -22.98376 -22.75175 -22.23255 -20.27949 -19.89785 -18.36929 -17.87000 -17.27502 -16.79335 -16.57315 -16.18202 -15.55551 -15.51365 -15.10156 -15.02018 -14.86221 -14.54754 -14.33868 -13.92847 -13.71224 -13.50782 -13.17450 -12.87089 -12.81063 -12.58456 -12.39094 -12.30494 -11.96581 -11.86210 -11.73226 -11.47948 -11.17225 -11.02237 -10.89579 -10.67472 -10.61010 -10.33319 -10.09597 -9.43975 -9.19303 -9.18244 -9.09781 -8.76193 -7.96129 -6.17994 -4.25462 0.91136 1.11392 1.91377 2.37482 3.21365 3.25243 3.29878 3.31260 3.34187 3.47830 3.98602 4.06523 4.33099 4.38441 4.63532 4.70369 4.71463 4.82459 5.04862 5.06940 5.09717 5.14407 5.17854 5.21240 5.24621 5.25625 5.33524 5.37119 5.47720 5.59831 5.68348 5.72861 6.12893 6.15687 6.20505 6.26849 6.65948 6.68886 7.24735 7.33452 7.48057 7.57429 7.65550 7.93762 8.52498 8.73178 8.99285 9.40770 10.92101 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026490 B = 0.002280 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.751567 B =12275.358890 C =12734.025336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.352 6.352 3 C 0.173 3.827 4 C -0.179 4.179 5 C 0.482 3.518 6 O -0.493 6.493 7 O -0.310 6.310 8 C 0.045 3.955 9 C 0.500 3.500 10 O -0.530 6.530 11 N -0.707 5.707 12 C 0.252 3.748 13 C -0.545 4.545 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.111 4.111 22 C -0.085 4.085 23 C -0.123 4.123 24 C -0.111 4.111 25 C -0.124 4.124 26 C -0.095 4.095 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.392 0.608 36 H 0.030 0.970 37 H 0.029 0.971 38 H 0.267 0.733 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.797 16.646 13.811 28.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.271 6.271 3 C 0.132 3.868 4 C -0.236 4.236 5 C 0.323 3.677 6 O -0.381 6.381 7 O -0.223 6.223 8 C -0.033 4.033 9 C 0.283 3.717 10 O -0.407 6.407 11 N -0.358 5.358 12 C 0.131 3.869 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.732 3.268 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.112 4.112 22 C -0.103 4.103 23 C -0.141 4.141 24 C -0.129 4.129 25 C -0.142 4.142 26 C -0.113 4.113 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.225 0.775 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.027 15.973 13.438 28.244 hybrid contribution 1.384 0.447 0.179 1.465 sum -17.643 16.420 13.617 27.682 Atomic orbital electron populations 1.22983 0.80221 1.03533 1.00843 1.88163 1.20552 1.23579 1.94765 1.19849 0.87123 0.85727 0.94109 1.22499 1.02759 1.00836 0.97552 1.22945 0.90456 0.78545 0.75724 1.90702 1.61100 1.41762 1.44488 1.86655 1.23292 1.49312 1.63074 1.22939 0.78222 1.00166 1.01963 1.19849 0.84105 0.85312 0.82469 1.90720 1.50421 1.48929 1.50660 1.46356 1.04909 1.34132 1.50378 1.19165 0.95026 0.83401 0.89264 1.21172 0.90680 1.15113 1.31398 0.91834 1.24953 0.99017 0.95056 0.94968 1.69964 1.35759 1.16258 1.30211 0.86448 0.84394 0.77742 0.78167 1.20034 1.21054 1.20047 1.19844 1.02674 0.94189 0.94489 1.20998 0.97543 0.93352 0.98395 1.21128 1.00069 1.00032 0.92913 1.21234 0.98955 0.94217 0.98482 1.21145 1.00727 0.94736 0.97592 1.21088 0.97736 1.00564 0.91920 0.93141 0.88727 0.93169 0.89608 0.89799 0.90221 0.88472 0.88502 0.77472 0.95248 0.95269 0.92324 0.85708 0.85742 0.85931 0.85723 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.60 101.05 0.97 1.14 16 2 O -0.35 -4.42 9.19 -49.12 -0.45 -4.88 16 3 C 0.17 2.06 0.92 -92.92 -0.09 1.98 16 4 C -0.18 -1.63 7.57 37.16 0.28 -1.35 16 5 C 0.48 7.21 6.82 36.01 0.25 7.45 16 6 O -0.49 -7.80 15.66 -18.75 -0.29 -8.10 16 7 O -0.31 -5.32 9.51 -48.35 -0.46 -5.78 16 8 C 0.04 0.72 5.94 36.01 0.21 0.93 16 9 C 0.50 10.33 7.91 -10.99 -0.09 10.25 16 10 O -0.53 -13.33 16.50 -14.10 -0.23 -13.57 16 11 N -0.71 -14.91 5.55 -61.48 -0.34 -15.25 16 12 C 0.25 6.66 5.43 -5.20 -0.03 6.63 16 13 C -0.55 -14.72 9.28 -34.44 -0.32 -15.04 16 14 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.88 -25.99 13.29 55.43 0.74 -25.25 16 17 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 C -0.11 -1.21 3.70 -104.62 -0.39 -1.59 16 22 C -0.08 -0.82 8.70 -39.58 -0.34 -1.16 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.11 -0.87 10.05 -39.59 -0.40 -1.27 16 25 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 26 C -0.10 -0.96 7.86 -39.58 -0.31 -1.28 16 27 H 0.05 0.36 6.70 -51.93 -0.35 0.02 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.37 6.11 -51.93 -0.32 0.05 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.59 6.62 -51.93 -0.34 0.24 16 32 H 0.08 0.63 6.57 -51.93 -0.34 0.29 16 33 H 0.10 1.38 8.13 -51.93 -0.42 0.96 16 34 H 0.10 1.32 8.13 -51.93 -0.42 0.90 16 35 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 36 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.13 1.06 6.48 -52.49 -0.34 0.72 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.13 1.30 6.98 -52.49 -0.37 0.93 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -34.87 366.57 -7.41 -42.29 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.73 Total: 3.75 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.14 Total: 5.49 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.40 Total: -40.51 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -1.44 Total: -32.32 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.87 -7.41 -42.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730354369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.379 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds