Wall clock time and date at job start Tue Mar 31 2020 13:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02698 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35897 * 120.05793 * 180.02562 * 8 6 5 10 10 C 1.42904 * 116.99870 * 90.00223 * 9 8 6 11 11 C 1.53002 * 109.47152 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46832 * 179.97438 * 11 10 9 13 13 O 1.20829 * 120.00242 * 0.02562 * 12 11 10 14 14 O 1.34228 * 119.99792 * 179.97438 * 12 11 10 15 15 C 1.45201 * 117.00259 * 180.02562 * 14 12 11 16 16 C 1.50692 * 109.47549 * 180.02562 * 15 14 12 17 17 O 1.21291 * 119.99804 * 359.97438 * 16 15 14 18 18 N 1.34784 * 120.00379 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00074 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99947 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99778 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00133 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99871 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47065 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46807 * 120.00323 * 23 21 19 26 26 H 1.48491 * 109.47099 * 240.00520 * 23 21 19 27 27 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 28 28 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 29 29 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 30 30 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 32 32 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47189 * 89.99754 * 7 6 5 34 34 H 1.09006 * 109.46628 * 209.99786 * 7 6 5 35 35 H 1.09001 * 109.47332 * 329.99143 * 7 6 5 36 36 H 1.08998 * 109.47029 * 300.00379 * 10 9 8 37 37 H 1.08998 * 109.47170 * 59.99852 * 10 9 8 38 38 H 1.08992 * 109.47010 * 300.00255 * 11 10 9 39 39 H 1.08995 * 109.46796 * 60.00374 * 11 10 9 40 40 H 1.09005 * 109.47265 * 300.00278 * 15 14 12 41 41 H 1.09001 * 109.47064 * 59.99928 * 15 14 12 42 42 H 0.97001 * 119.99574 * 359.97438 * 18 16 15 43 43 H 0.96999 * 119.99711 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 0.0009 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0099 10 6 1.1951 -2.9441 1.2609 11 6 0.4398 -4.2587 1.0547 12 6 0.0941 -4.8548 2.3949 13 8 0.4181 -4.2864 3.4107 14 8 -0.5746 -6.0168 2.4601 15 6 -0.8742 -6.5316 3.7843 16 6 -1.6223 -7.8338 3.6598 17 8 -1.8784 -8.2835 2.5628 18 7 -2.0070 -8.4987 4.7673 19 6 -2.6881 -9.6831 4.6539 20 1 -2.9161 -10.0835 3.6771 21 6 -3.0841 -10.3688 5.7957 22 7 -2.8062 -9.8818 6.9841 23 14 -4.0129 -11.9822 5.6412 24 1 -4.1995 -12.3104 4.2049 25 1 -3.2376 -13.0645 6.2991 26 1 -5.3392 -11.8546 6.2966 27 1 -0.3633 0.0002 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6584 2.1313 -0.0004 31 1 4.1197 2.1327 0.0107 32 1 5.3552 0.0039 0.0106 33 1 4.5238 -2.8172 1.0286 34 1 3.7611 -3.2610 -0.5173 35 1 5.3001 -2.3666 -0.5085 36 1 2.1104 -3.1353 1.8209 37 1 0.5677 -2.2476 1.8171 38 1 -0.4755 -4.0678 0.4945 39 1 1.0676 -4.9550 0.4988 40 1 0.0556 -6.6979 4.3284 41 1 -1.4872 -5.8102 4.3245 42 1 -1.8018 -8.1392 5.6446 43 1 -3.0830 -10.3604 7.7811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731240584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:38 Heat of formation + Delta-G solvation = -147.509057 kcal Electronic energy + Delta-G solvation = -25592.528400 eV Core-core repulsion = 21602.923061 eV Total energy + Delta-G solvation = -3989.605339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.68493 -40.28304 -38.23193 -37.66107 -36.20759 -34.02262 -33.91041 -32.62461 -31.40472 -31.10628 -28.52094 -27.33816 -26.95686 -25.03222 -24.08827 -22.07873 -21.21537 -20.67900 -19.60959 -18.36946 -18.09082 -17.27762 -17.09236 -16.44025 -16.28769 -15.82928 -15.32300 -15.28191 -14.99072 -14.52983 -14.27138 -13.94466 -13.92849 -13.74596 -13.44687 -13.30430 -13.01433 -12.92341 -12.63231 -12.26934 -12.22646 -12.10895 -11.95148 -11.82756 -11.63929 -11.44392 -11.33882 -11.16628 -10.53580 -10.47818 -10.40200 -10.31209 -10.09942 -9.63476 -8.92128 -8.82541 -8.54697 -8.10206 -6.51749 -3.93780 0.84628 0.99298 2.21265 2.43486 3.10665 3.19451 3.23441 3.30871 3.68278 3.71453 4.11166 4.41438 4.47690 4.48347 4.62744 4.69929 4.75134 4.92410 5.03070 5.06116 5.12623 5.13160 5.22289 5.24157 5.33658 5.37840 5.43310 5.47732 5.49180 5.52541 5.53821 5.66405 5.81062 5.93681 6.02900 6.11494 6.12478 6.24634 6.44618 6.56246 7.24614 7.46520 7.75734 7.93485 8.46514 9.05496 9.37382 9.87138 10.65510 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.035274 B = 0.001828 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.597126 B =15313.724098 C =15469.160160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.117 4.117 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.096 4.096 7 C -0.116 4.116 8 C 0.095 3.905 9 O -0.331 6.331 10 C 0.079 3.921 11 C -0.113 4.113 12 C 0.465 3.535 13 O -0.516 6.516 14 O -0.322 6.322 15 C 0.061 3.939 16 C 0.438 3.562 17 O -0.576 6.576 18 N -0.553 5.553 19 C -0.302 4.302 20 H 0.107 0.893 21 C 0.024 3.976 22 N -0.897 5.897 23 Si 0.934 3.066 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.395 0.605 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.352 21.435 -11.412 27.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.135 4.135 4 C -0.135 4.135 5 C -0.135 4.135 6 C -0.097 4.097 7 C -0.173 4.173 8 C 0.052 3.948 9 O -0.248 6.248 10 C 0.005 3.995 11 C -0.150 4.150 12 C 0.308 3.692 13 O -0.406 6.406 14 O -0.237 6.237 15 C -0.017 4.017 16 C 0.222 3.778 17 O -0.460 6.460 18 N -0.190 5.190 19 C -0.431 4.431 20 H 0.125 0.875 21 C -0.178 4.178 22 N -0.537 5.537 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.228 0.772 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.141 21.067 -11.787 27.021 hybrid contribution -0.209 -0.369 0.983 1.071 sum 11.932 20.698 -10.803 26.220 Atomic orbital electron populations 1.20739 0.90518 1.02932 1.02794 1.20260 0.96887 0.92469 1.00078 1.20941 0.94209 0.97130 1.01203 1.21155 0.94250 0.98093 1.00048 1.20945 0.99877 0.91473 1.01191 1.20258 0.92992 0.96368 1.00052 1.20752 0.99679 0.94235 1.02605 1.18270 0.89315 0.84780 1.02458 1.85910 1.74779 1.35084 1.29022 1.22379 0.99636 0.93456 0.84054 1.21054 1.04053 0.96655 0.93272 1.23283 0.74865 0.79409 0.91630 1.90677 1.51185 1.61265 1.37443 1.86542 1.67249 1.36128 1.33744 1.22777 1.01183 0.96381 0.81336 1.19314 0.86135 0.86359 0.85957 1.90567 1.59931 1.69312 1.26142 1.41714 1.49613 1.20950 1.06714 1.19783 1.31214 0.97071 0.95053 0.87527 1.25322 0.97931 1.00042 0.94510 1.69621 1.46487 1.39973 0.97663 0.85734 0.78760 0.80683 0.78787 1.19070 1.20619 1.20613 0.90722 0.91190 0.91467 0.85661 0.85785 0.85666 0.91105 0.90592 0.91349 0.91670 0.91648 0.86429 0.86425 0.89450 0.89442 0.77156 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.79 36.01 0.35 -0.57 16 2 C -0.10 -0.92 5.89 -104.47 -0.62 -1.54 16 3 C -0.12 -0.95 9.70 -39.60 -0.38 -1.33 16 4 C -0.12 -0.89 10.04 -39.56 -0.40 -1.28 16 5 C -0.12 -0.95 9.70 -39.61 -0.38 -1.33 16 6 C -0.10 -0.92 5.89 -104.47 -0.62 -1.53 16 7 C -0.12 -0.94 9.79 36.01 0.35 -0.59 16 8 C 0.10 1.01 5.67 -39.22 -0.22 0.78 16 9 O -0.33 -3.59 8.33 -19.42 -0.16 -3.75 16 10 C 0.08 0.84 4.98 37.16 0.19 1.02 16 11 C -0.11 -1.22 6.18 -27.88 -0.17 -1.39 16 12 C 0.47 6.91 7.96 36.00 0.29 7.19 16 13 O -0.52 -8.55 15.73 -18.75 -0.29 -8.85 16 14 O -0.32 -5.83 9.75 -45.90 -0.45 -6.28 16 15 C 0.06 1.14 5.94 36.00 0.21 1.35 16 16 C 0.44 10.48 7.86 -10.99 -0.09 10.40 16 17 O -0.58 -15.94 16.08 -14.11 -0.23 -16.17 16 18 N -0.55 -13.90 5.29 -10.97 -0.06 -13.95 16 19 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 20 H 0.11 3.06 7.16 -52.49 -0.38 2.69 16 21 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 22 N -0.90 -23.96 13.05 55.50 0.72 -23.23 16 23 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.61 6.30 -51.93 -0.33 0.28 16 29 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.65 7.53 -51.93 -0.39 0.26 16 35 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 36 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.07 0.71 7.19 -51.93 -0.37 0.34 16 38 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 41 H 0.09 1.49 8.13 -51.93 -0.42 1.06 16 42 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -32.84 375.35 -7.55 -40.39 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.99 Total: 7.30 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.73 Total: 3.29 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.67 Total: -37.18 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -1.13 Total: -35.05 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.84 -7.55 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.118 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds